ISNma2
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001932 | ND | Natrialba magadii | Natrialba magadii ATCC 43099 |
DNA section
IS Length : 1471 bp
Ends
IR Length : 17
IRL : GGCTCTGTTGAAATCCTTAGTGAGTTACAGGTTCGGTCGGTAGTTTGAGT
IRR : GGCTCTGTTGAAATCCTCTTCTTTAGATATTTATTCGCGCGAATCTACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGAGTTTTG TTATAACC | ATTCGATA CCAATCACTA | 0 | |
ACAGTCTGGT ATTCGATA | TTATAACC GTAGCAACAC | 0 |
DNA sequence
GGCTCTGTTGAAATCCTTAGTGAGTTACAGGTTCGGTCGGTAGTTTGAGTAGATGCAGACCCTCCCAAAGTCTCGGTTGCTCCGATTTGTCGAGGAAGCA
TTTCAGTTAGCGAAACGTGCCGTAGCTCGATACTCCTCAAAGTTCTCGAAACAACGCTACACGCTCCATCAGCACATCGTTCTCCTCTGTCTCAAGGTTC
GGAAGAACACGACCTATCGTACACTCCTCGACGAACTCATCGAGATGCCCCGTATCCGGAACGCGATCAATCTCACTGAACTCCCTGCGCCGTCTACGCT
CTGCAAGGCGTTCAACAGACTCGATATGGCTGTCTGGCGAGTGCTGCTCAATCTCTCTGTTTCACTGCTCCCGACCACCGGCGTTGCGGGGATCGATGCT
TCGGGATTCGACCGCAGTCACGCCTCGAAACACTACACGAAACGAGCCAAACTCACGATTCAGCAACTCAAAGTAACACTGTTGGTCGATTCCAAAGTGA
ACGCAGTCCTTGATTTACACGTGACGACGACACGAAAACACGATAGCCAGATCGCTCCATCGTTGATCAAACGTAACCCCGAGACTATCGACATCTTGCT
CGGGGACAAAGGCTACGACGACCAGAAAATCAGACGGCTTGCTCGTCAACACGAGATTCGTCCACTAATCAAGCATCGTGAGTTCACACCGCTTCACAAG
GCATGGAACGCACGCTTAGACGCTGACCTCTACGGCCAACGGAGTCAATCAGAGACAGTCAACTCAACGCTCAAGCGGAAGTACGGTGCATTCGTCCGTT
CACGACGCTGGTGGAAGCAGTTTCGTGAACTCGCTCTTGGGTGTATCGTCCACAATCTTGACCAAGCAATCTAACGGTTAGTACAGGGCAAGAAGTCATC
GCTCAATAGAGCGACTATCGGAACCGTTCGATGATATTAATCGAGCCGGGATACGACCACGCTGACCCGGACGCCGCTTTCTGTGTGGCAACGACAGCAA
ATCCGAATGTAGCGAAAACCGCGACCACCAGTGCAAGTAGCAAGGGGATTCCAATGAAGGTAAACACTGTGTCGAGGGGTGACGGTACCGCCAGCAGTTC
AGTCGGCTCACCGTTGATTGTTACTTCGTCGGCACCAAGGAAGCCTGTCACGAACGCAGCAACTGCCAGAACAATAACGGTGATATGCCAATTAATCGCG
TTTCGGGCGTTCTCTCGCGTAAATTCGTGGTCTGATACGGCATACATGATGGCAGGGCCAACGAAACTGGTGAAAAGCGCCAACACGTGGACGAGAATGC
CGCCCAAAGAACGATTCTCAGGTTGGTCGGAGCCGGACAGTGTTGCTGTGGAGGGCATTATATTTTGATAACTTGTCTCGCCCTGTATATCTTTTCTTGC
TCAGTTCGCACGTGTAGGGCACAGTAGATTCGCGCGAATAAATATCTAAAGAAGAGGATTTCAACAGAGCC
TTTCAGTTAGCGAAACGTGCCGTAGCTCGATACTCCTCAAAGTTCTCGAAACAACGCTACACGCTCCATCAGCACATCGTTCTCCTCTGTCTCAAGGTTC
GGAAGAACACGACCTATCGTACACTCCTCGACGAACTCATCGAGATGCCCCGTATCCGGAACGCGATCAATCTCACTGAACTCCCTGCGCCGTCTACGCT
CTGCAAGGCGTTCAACAGACTCGATATGGCTGTCTGGCGAGTGCTGCTCAATCTCTCTGTTTCACTGCTCCCGACCACCGGCGTTGCGGGGATCGATGCT
TCGGGATTCGACCGCAGTCACGCCTCGAAACACTACACGAAACGAGCCAAACTCACGATTCAGCAACTCAAAGTAACACTGTTGGTCGATTCCAAAGTGA
ACGCAGTCCTTGATTTACACGTGACGACGACACGAAAACACGATAGCCAGATCGCTCCATCGTTGATCAAACGTAACCCCGAGACTATCGACATCTTGCT
CGGGGACAAAGGCTACGACGACCAGAAAATCAGACGGCTTGCTCGTCAACACGAGATTCGTCCACTAATCAAGCATCGTGAGTTCACACCGCTTCACAAG
GCATGGAACGCACGCTTAGACGCTGACCTCTACGGCCAACGGAGTCAATCAGAGACAGTCAACTCAACGCTCAAGCGGAAGTACGGTGCATTCGTCCGTT
CACGACGCTGGTGGAAGCAGTTTCGTGAACTCGCTCTTGGGTGTATCGTCCACAATCTTGACCAAGCAATCTAACGGTTAGTACAGGGCAAGAAGTCATC
GCTCAATAGAGCGACTATCGGAACCGTTCGATGATATTAATCGAGCCGGGATACGACCACGCTGACCCGGACGCCGCTTTCTGTGTGGCAACGACAGCAA
ATCCGAATGTAGCGAAAACCGCGACCACCAGTGCAAGTAGCAAGGGGATTCCAATGAAGGTAAACACTGTGTCGAGGGGTGACGGTACCGCCAGCAGTTC
AGTCGGCTCACCGTTGATTGTTACTTCGTCGGCACCAAGGAAGCCTGTCACGAACGCAGCAACTGCCAGAACAATAACGGTGATATGCCAATTAATCGCG
TTTCGGGCGTTCTCTCGCGTAAATTCGTGGTCTGATACGGCATACATGATGGCAGGGCCAACGAAACTGGTGAAAAGCGCCAACACGTGGACGAGAATGC
CGCCCAAAGAACGATTCTCAGGTTGGTCGGAGCCGGACAGTGTTGCTGTGGAGGGCATTATATTTTGATAACTTGTCTCGCCCTGTATATCTTTTCTTGC
TCAGTTCGCACGTGTAGGGCACAGTAGATTCGCGCGAATAAATATCTAAAGAAGAGGATTTCAACAGAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 53 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MQTLPKSRLLRFVEEAFQLAKRAVARYSSKFSKQRYTLHQHIVLLCLKVRKNTTYRTLLDELIEMPRIRNAINLTELPAPSTLCKAFNRLDMAVWRVLLN
LSVSLLPTTGVAGIDASGFDRSHASKHYTKRAKLTIQQLKVTLLVDSKVNAVLDLHVTTTRKHDSQIAPSLIKRNPETIDILLGDKGYDDQKIRRLARQH
EIRPLIKHREFTPLHKAWNARLDADLYGQRSQSETVNSTLKRKYGAFVRSRRWWKQFRELALGCIVHNLDQAI
LSVSLLPTTGVAGIDASGFDRSHASKHYTKRAKLTIQQLKVTLLVDSKVNAVLDLHVTTTRKHDSQIAPSLIKRNPETIDILLGDKGYDDQKIRRLARQH
EIRPLIKHREFTPLHKAWNARLDADLYGQRSQSETVNSTLKRKYGAFVRSRRWWKQFRELALGCIVHNLDQAI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
444 bp | 147 aa | 915 | 1358 | - | No |
Annotation : AcyltransferaseDescription :
ORF sequence :
MPSTATLSGSDQPENRSLGGILVHVLALFTSFVGPAIMYAVSDHEFTRENARNAINWHITVIVLAVAAFVTGFLGADEVTINGEPTELLAVPSPLDTVFT
FIGIPLLLALVVAVFATFGFAVVATQKAASGSAWSYPGSINIIERFR
FIGIPLLLALVVAVFATFGFAVVATQKAASGSAWSYPGSINIIERFR
Blast result :
Comments
ISNma2 is 94% aa (ORFA : the transposase) similar to ISHla2.
There are probably a recombination event between the two insertion sites of the two copies.
There are probably a recombination event between the two insertion sites of the two copies.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165