ISNma2

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001932 ND Natrialba magadii
Natrialba magadii ATCC 43099
DNA section
IS Length : 1471 bp

Ends


IR Length : 17

IRL : GGCTCTGTTGAAATCCTTAGTGAGTTACAGGTTCGGTCGGTAGTTTGAGT
IRR : GGCTCTGTTGAAATCCTCTTCTTTAGATATTTATTCGCGCGAATCTACTG

Insertion site


Left flankDirect repeatRight flankDR Length
CCGAGTTTTG TTATAACCATTCGATA CCAATCACTA0
ACAGTCTGGT ATTCGATATTATAACC GTAGCAACAC0

DNA sequence

GGCTCTGTTGAAATCCTTAGTGAGTTACAGGTTCGGTCGGTAGTTTGAGTAGATGCAGACCCTCCCAAAGTCTCGGTTGCTCCGATTTGTCGAGGAAGCA
TTTCAGTTAGCGAAACGTGCCGTAGCTCGATACTCCTCAAAGTTCTCGAAACAACGCTACACGCTCCATCAGCACATCGTTCTCCTCTGTCTCAAGGTTC
GGAAGAACACGACCTATCGTACACTCCTCGACGAACTCATCGAGATGCCCCGTATCCGGAACGCGATCAATCTCACTGAACTCCCTGCGCCGTCTACGCT
CTGCAAGGCGTTCAACAGACTCGATATGGCTGTCTGGCGAGTGCTGCTCAATCTCTCTGTTTCACTGCTCCCGACCACCGGCGTTGCGGGGATCGATGCT
TCGGGATTCGACCGCAGTCACGCCTCGAAACACTACACGAAACGAGCCAAACTCACGATTCAGCAACTCAAAGTAACACTGTTGGTCGATTCCAAAGTGA
ACGCAGTCCTTGATTTACACGTGACGACGACACGAAAACACGATAGCCAGATCGCTCCATCGTTGATCAAACGTAACCCCGAGACTATCGACATCTTGCT
CGGGGACAAAGGCTACGACGACCAGAAAATCAGACGGCTTGCTCGTCAACACGAGATTCGTCCACTAATCAAGCATCGTGAGTTCACACCGCTTCACAAG
GCATGGAACGCACGCTTAGACGCTGACCTCTACGGCCAACGGAGTCAATCAGAGACAGTCAACTCAACGCTCAAGCGGAAGTACGGTGCATTCGTCCGTT
CACGACGCTGGTGGAAGCAGTTTCGTGAACTCGCTCTTGGGTGTATCGTCCACAATCTTGACCAAGCAATCTAACGGTTAGTACAGGGCAAGAAGTCATC
GCTCAATAGAGCGACTATCGGAACCGTTCGATGATATTAATCGAGCCGGGATACGACCACGCTGACCCGGACGCCGCTTTCTGTGTGGCAACGACAGCAA
ATCCGAATGTAGCGAAAACCGCGACCACCAGTGCAAGTAGCAAGGGGATTCCAATGAAGGTAAACACTGTGTCGAGGGGTGACGGTACCGCCAGCAGTTC
AGTCGGCTCACCGTTGATTGTTACTTCGTCGGCACCAAGGAAGCCTGTCACGAACGCAGCAACTGCCAGAACAATAACGGTGATATGCCAATTAATCGCG
TTTCGGGCGTTCTCTCGCGTAAATTCGTGGTCTGATACGGCATACATGATGGCAGGGCCAACGAAACTGGTGAAAAGCGCCAACACGTGGACGAGAATGC
CGCCCAAAGAACGATTCTCAGGTTGGTCGGAGCCGGACAGTGTTGCTGTGGAGGGCATTATATTTTGATAACTTGTCTCGCCCTGTATATCTTTTCTTGC
TCAGTTCGCACGTGTAGGGCACAGTAGATTCGCGCGAATAAATATCTAAAGAAGAGGATTTCAACAGAGCC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa53874+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQTLPKSRLLRFVEEAFQLAKRAVARYSSKFSKQRYTLHQHIVLLCLKVRKNTTYRTLLDELIEMPRIRNAINLTELPAPSTLCKAFNRLDMAVWRVLLN
LSVSLLPTTGVAGIDASGFDRSHASKHYTKRAKLTIQQLKVTLLVDSKVNAVLDLHVTTTRKHDSQIAPSLIKRNPETIDILLGDKGYDDQKIRRLARQH
EIRPLIKHREFTPLHKAWNARLDADLYGQRSQSETVNSTLKRKYGAFVRSRRWWKQFRELALGCIVHNLDQAI

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
444 bp147 aa9151358-No
ORF function : Passenger Gene
Annotation : AcyltransferaseDescription :

ORF sequence :

MPSTATLSGSDQPENRSLGGILVHVLALFTSFVGPAIMYAVSDHEFTRENARNAINWHITVIVLAVAAFVTGFLGADEVTINGEPTELLAVPSPLDTVFT
FIGIPLLLALVVAVFATFGFAVVATQKAASGSAWSYPGSINIIERFR

 

Blast result :
Comments
ISNma2 is 94% aa (ORFA : the transposase) similar to ISHla2.
There are probably a recombination event between the two insertion sites of the two copies.
References
1] Pfeiffer, F. (2013) Direct submission
2] Siddaramappa, S., Challacombe, J.F., Decastro, R.E., Pfeiffer, F., Sastre, D.E., Gimenez, M.I., Paggi, R.A., Detter, J.C., Davenport, K.W., Goodwin, L.A., Kyrpides, N., Tapia, R., Pitluck, S., Lucas, S., Woyke, T., Maupin-Furlow, J.A. BMC Genomics (2012) 13: 165