ISNpe2
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003372 | ND | Natrinema pellirubrum | Natrinema pellirubrum DSM 15624 Natrinema pellirubrum DSM 15624 plasmid pNATPE01 Natrinema pellirubrum DSM 15624 plasmid pNATPE02 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 15
IRL : GAGCGTGTCATAGAAAGCGTCACGTACGAAGCAGCAGGGTGCGGAAAGTG
IRR : GAGCGTGTCATAGAATCCAACTCATAGCTTGAGCATCTCACGTCCTGGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCCGCTTCT | TACTGAT | TCCTATTACA | 7 |
GAGTTTAGCA | CTGGGC | GGCAACTCTG | 6 |
GCCAGTTGGC | CCAGCC | ACTAATCGAG | 6 |
GTCAGTTGCA | TACCT | TCCAGTTGGA | 5 |
GTCATTGTAG | GTTTG | GTTTGAACTA | 5 |
ATCACGGTCT | AC | AGAGTTCAAA | 2 |
TTGGAGTTTG | GGTTTGTGCA | 0 | |
ACAAATACGT | TACCCACATA | 0 |
DNA sequence
GAGCGTGTCATAGAAAGCGTCACGTACGAAGCAGCAGGGTGCGGAAAGTGTGTCCAGCACAACCGCGACCCTGCAAGACGTTGCTTCGGTCGATGAGTTT
TTGAATGCAGCGGCTACGGAAACAGTTCCGCTGTTTGAGTATCTTGAGTTCGAGTTTCTACTGGAGTACGACGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGTTCACCAGCCACCTGATCTCTTTCGCGCCTTTCTCCATTGCTACTACAAGAACATCTACGGAACACGCCCAGTCACGCGAGAACTCCAGCACGG
CCTTGTCTGGTACTACTGCGGACTCGACAAACCGCCATCGAGAGACACCATTGACCGGTTTCTCACTGATCTCGAACACATTATCAACGATGTCTTCGAC
AGGCTCGTCGAGCAGGCCGCCGTCCGCGGCCTGCTCGACTCGACGTACTCTATCGATTCGACGCACATCGAGGCGATCCAGTACAACGACGCTGCCTCAT
GGAACTACGATCCAACAGCCGAAGAGTACTACTACGGCTTCGGCTGTACGATCGTTTCAACCGGTGCAAAGATCCCGATAGCAGCGGAGTTCACACAGGC
CAAACAAGCAGACCAAGAGACGGCGATGCGCGTCACGGGTGACGCGCTCGCCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTACGACATCCTC
GATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCTCCGTACAACCCGCGAAACACTGACGACCCGAAAGACATCGAGTACAGGGTCGAAG
ACCGCATTGAGGAACACAGCGAGGACGTTCAGCTGAAACGATCCATCTTGGACGAGACGTTCAACAACCGGACAGGAATCGAACGAACCAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTCGTTGCGCTATGTCTTCGGATCGTCATTGCAATCACC
AACTACGAGCGAGGACACGATCCAGGACGTGAGATGCTCAAGCTATGAGTTGGATTCTATGACACGCTC
TTGAATGCAGCGGCTACGGAAACAGTTCCGCTGTTTGAGTATCTTGAGTTCGAGTTTCTACTGGAGTACGACGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGTTCACCAGCCACCTGATCTCTTTCGCGCCTTTCTCCATTGCTACTACAAGAACATCTACGGAACACGCCCAGTCACGCGAGAACTCCAGCACGG
CCTTGTCTGGTACTACTGCGGACTCGACAAACCGCCATCGAGAGACACCATTGACCGGTTTCTCACTGATCTCGAACACATTATCAACGATGTCTTCGAC
AGGCTCGTCGAGCAGGCCGCCGTCCGCGGCCTGCTCGACTCGACGTACTCTATCGATTCGACGCACATCGAGGCGATCCAGTACAACGACGCTGCCTCAT
GGAACTACGATCCAACAGCCGAAGAGTACTACTACGGCTTCGGCTGTACGATCGTTTCAACCGGTGCAAAGATCCCGATAGCAGCGGAGTTCACACAGGC
CAAACAAGCAGACCAAGAGACGGCGATGCGCGTCACGGGTGACGCGCTCGCCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTACGACATCCTC
GATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCTCCGTACAACCCGCGAAACACTGACGACCCGAAAGACATCGAGTACAGGGTCGAAG
ACCGCATTGAGGAACACAGCGAGGACGTTCAGCTGAAACGATCCATCTTGGACGAGACGTTCAACAACCGGACAGGAATCGAACGAACCAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTCGTTGCGCTATGTCTTCGGATCGTCATTGCAATCACC
AACTACGAGCGAGGACACGATCCAGGACGTGAGATGCTCAAGCTATGAGTTGGATTCTATGACACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 50 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MSSTTATLQDVASVDEFLNAAATETVPLFEYLEFEFLLEYDVFAPARRGRTRVHQPPDLFRAFLHCYYKNIYGTRPVTRELQHGLVWYYCGLDKPPSRDT
IDRFLTDLEHIINDVFDRLVEQAAVRGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQADQETAMRVTGDAL
AVDTPIWMLGDSAYDILDWHDYLLTAGVVPIAPYNPRNTDDPKDIEYRVEDRIEEHSEDVQLKRSILDETFNNRTGIERTNDAVKDCGLGHVRARGRVHA
RTEVFVALCLRIVIAITNYERGHDPGREMLKL
IDRFLTDLEHIINDVFDRLVEQAAVRGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQADQETAMRVTGDAL
AVDTPIWMLGDSAYDILDWHDYLLTAGVVPIAPYNPRNTDDPKDIEYRVEDRIEEHSEDVQLKRSILDETFNNRTGIERTNDAVKDCGLGHVRARGRVHA
RTEVFVALCLRIVIAITNYERGHDPGREMLKL
Blast result :
Comments
ISNpe3 is 94% aa similar to ISHwa14.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T.
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T.