ISNpe2

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003372 ND Natrinema pellirubrum
Natrinema pellirubrum DSM 15624
Natrinema pellirubrum DSM 15624 plasmid pNATPE01
Natrinema pellirubrum DSM 15624 plasmid pNATPE02
DNA section
IS Length : 1069 bp

Ends


IR Length : 15

IRL : GAGCGTGTCATAGAAAGCGTCACGTACGAAGCAGCAGGGTGCGGAAAGTG
IRR : GAGCGTGTCATAGAATCCAACTCATAGCTTGAGCATCTCACGTCCTGGAT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCCGCTTCTTACTGATTCCTATTACA7
GAGTTTAGCACTGGGCGGCAACTCTG6
GCCAGTTGGCCCAGCCACTAATCGAG6
GTCAGTTGCATACCTTCCAGTTGGA5
GTCATTGTAGGTTTGGTTTGAACTA5
ATCACGGTCTACAGAGTTCAAA2
TTGGAGTTTGGGTTTGTGCA0
ACAAATACGTTACCCACATA0

DNA sequence

GAGCGTGTCATAGAAAGCGTCACGTACGAAGCAGCAGGGTGCGGAAAGTGTGTCCAGCACAACCGCGACCCTGCAAGACGTTGCTTCGGTCGATGAGTTT
TTGAATGCAGCGGCTACGGAAACAGTTCCGCTGTTTGAGTATCTTGAGTTCGAGTTTCTACTGGAGTACGACGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGTTCACCAGCCACCTGATCTCTTTCGCGCCTTTCTCCATTGCTACTACAAGAACATCTACGGAACACGCCCAGTCACGCGAGAACTCCAGCACGG
CCTTGTCTGGTACTACTGCGGACTCGACAAACCGCCATCGAGAGACACCATTGACCGGTTTCTCACTGATCTCGAACACATTATCAACGATGTCTTCGAC
AGGCTCGTCGAGCAGGCCGCCGTCCGCGGCCTGCTCGACTCGACGTACTCTATCGATTCGACGCACATCGAGGCGATCCAGTACAACGACGCTGCCTCAT
GGAACTACGATCCAACAGCCGAAGAGTACTACTACGGCTTCGGCTGTACGATCGTTTCAACCGGTGCAAAGATCCCGATAGCAGCGGAGTTCACACAGGC
CAAACAAGCAGACCAAGAGACGGCGATGCGCGTCACGGGTGACGCGCTCGCCGTCGATACACCGATCTGGATGCTTGGAGACAGCGCCTACGACATCCTC
GATTGGCACGACTACCTGCTGACCGCAGGAGTCGTGCCAATCGCTCCGTACAACCCGCGAAACACTGACGACCCGAAAGACATCGAGTACAGGGTCGAAG
ACCGCATTGAGGAACACAGCGAGGACGTTCAGCTGAAACGATCCATCTTGGACGAGACGTTCAACAACCGGACAGGAATCGAACGAACCAACGACGCAGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTCGTTGCGCTATGTCTTCGGATCGTCATTGCAATCACC
AACTACGAGCGAGGACACGATCCAGGACGTGAGATGCTCAAGCTATGAGTTGGATTCTATGACACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa501048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSTTATLQDVASVDEFLNAAATETVPLFEYLEFEFLLEYDVFAPARRGRTRVHQPPDLFRAFLHCYYKNIYGTRPVTRELQHGLVWYYCGLDKPPSRDT
IDRFLTDLEHIINDVFDRLVEQAAVRGLLDSTYSIDSTHIEAIQYNDAASWNYDPTAEEYYYGFGCTIVSTGAKIPIAAEFTQAKQADQETAMRVTGDAL
AVDTPIWMLGDSAYDILDWHDYLLTAGVVPIAPYNPRNTDDPKDIEYRVEDRIEEHSEDVQLKRSILDETFNNRTGIERTNDAVKDCGLGHVRARGRVHA
RTEVFVALCLRIVIAITNYERGHDPGREMLKL

 

Blast result :
Comments
ISNpe3 is 94% aa similar to ISHwa14.
References
1] Pfeiffer, F. (2013) Direct submission
2] Lucas,S., Han,J., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Peters,L., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Pagani,I., Sproer,C., Anderson,I. and Woyke,T.