ISH31
- Family ISH6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AGIR01000001.1 | ND | Halobacterium sp. | Halobacterium sp. DL1 |
DNA section
IS Length : 1445 bp
Ends
IR Length : 23/27
IRL : GGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGGCTCCCGTGAG
IRR : GGTCGTGTCGCAAAGCGGTCTAGACTTTGCCGCTGGTACTCTCAATTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCGTTCGGC | AAAAACTT | GGGGAAAAAG | 8 |
DNA sequence
GGTCGTGTCGCAAAGTCCTCTAGAGTTCAGTAGTAACTGGCTCCCGTGAGGAACGGGTCGCCTCTGGTATCCACCCAAGAGGTGACCCATGCACGCCACA
ATCGACGTGCGGTTTGAACTGAGTATCGACGACAACAAAACGCTACCGCTCGCCACGCTTGCCGAGGCCGTCACTGACCAGAACCTCGAAGCAGTACTCC
TTGAATCGCTGGTCGAGAGCCTCGACGCCGCCAGCGTCGAGGCGCTCTGTGGCGACAAACACGCCCACGGCAACGGTGACCAACGCTTCCAACGCGCCGG
CACCGATACCCGCACAGCTGTCACAACCGCCGGGGAACACGAGTTCTCTCTCCACTACATCGAAGATACAGCCGCTGATAACGACGAATCCAGCTATTTC
CGCCCCGTCGAAGACGTTCTTAGCTTCGACGGACAGAACCGCTATCAGCAGGACATCGCCGCCAAAAGCGTCGATCTCGCTACCTCGCTCAGCTATCGTG
ACGCTGCCGATCACGGCGACGGCTTCGTCTCGATGCCGTCGCCGACCACCATCAACCGCCGTGCCAAGAAATACGGCCACAAGCTCAAGCAGTTCCTCCC
AGACTGTGTCGCTGACACAGACGCTGACACCGTCATTCCTGACGGGACAAAATGCCACAGCCAAGACGACGACCGCTCGTCCCACTCCGTCCAAGCAACG
CTCGGCGAAGACACCGCCGAAGAGTCACGCTCCCTCCTGGATCTGTCGGTCAACGCTGACTGGGACGAAACTGCCGCCGAACTCGATGATATCGGCGCAG
TCACTGACGACGCGACGGTCGTCAGTGACGCTGATAGCGGCATCGTCACGGCCTTTACCGACGAAGCCCGTGACCACCAACTCGATCTCGTTCACGTCGG
CCGAACGCTGGGCTACACCCTCTGGGACGATGGCGTCTTCTCCTTGGACCGCCGGAAGGAGATCGTTTCGGAGGTGATCGACGAGGTATCCCATCTGAAG
AACTCGGTGGTGAAACACCATCCAGAAGAGGAGTTCGAGGCGATCCGCTCGCGGATCGCGCGAACGAGAGAGCGATTGGAGAAGACAGCGTGGCAACTGG
AGCAGTTCGGGTCAGCGAAGGCTGCAGGGTATCTTCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAGCACGCTGTCGAGGGGTTCGAGGTTCCGTG
GACCTCGAACCCCGTCGAACGACTGATGGGCGAGGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAGCAGAGGGATTGGAAGCGATACTCCAA
CTTCGGTTGGTGAAGTACACCGACCCCGAGTACTACCAAGCGTTCCTCGACGAACTGCTCCAGCGTTCGACCAAAACAGCAATCAACTGTGACCTCTCAA
TTGAGAGTACCAGCGGCAAAGTCTAGACCGCTTTGCGACACGACC
ATCGACGTGCGGTTTGAACTGAGTATCGACGACAACAAAACGCTACCGCTCGCCACGCTTGCCGAGGCCGTCACTGACCAGAACCTCGAAGCAGTACTCC
TTGAATCGCTGGTCGAGAGCCTCGACGCCGCCAGCGTCGAGGCGCTCTGTGGCGACAAACACGCCCACGGCAACGGTGACCAACGCTTCCAACGCGCCGG
CACCGATACCCGCACAGCTGTCACAACCGCCGGGGAACACGAGTTCTCTCTCCACTACATCGAAGATACAGCCGCTGATAACGACGAATCCAGCTATTTC
CGCCCCGTCGAAGACGTTCTTAGCTTCGACGGACAGAACCGCTATCAGCAGGACATCGCCGCCAAAAGCGTCGATCTCGCTACCTCGCTCAGCTATCGTG
ACGCTGCCGATCACGGCGACGGCTTCGTCTCGATGCCGTCGCCGACCACCATCAACCGCCGTGCCAAGAAATACGGCCACAAGCTCAAGCAGTTCCTCCC
AGACTGTGTCGCTGACACAGACGCTGACACCGTCATTCCTGACGGGACAAAATGCCACAGCCAAGACGACGACCGCTCGTCCCACTCCGTCCAAGCAACG
CTCGGCGAAGACACCGCCGAAGAGTCACGCTCCCTCCTGGATCTGTCGGTCAACGCTGACTGGGACGAAACTGCCGCCGAACTCGATGATATCGGCGCAG
TCACTGACGACGCGACGGTCGTCAGTGACGCTGATAGCGGCATCGTCACGGCCTTTACCGACGAAGCCCGTGACCACCAACTCGATCTCGTTCACGTCGG
CCGAACGCTGGGCTACACCCTCTGGGACGATGGCGTCTTCTCCTTGGACCGCCGGAAGGAGATCGTTTCGGAGGTGATCGACGAGGTATCCCATCTGAAG
AACTCGGTGGTGAAACACCATCCAGAAGAGGAGTTCGAGGCGATCCGCTCGCGGATCGCGCGAACGAGAGAGCGATTGGAGAAGACAGCGTGGCAACTGG
AGCAGTTCGGGTCAGCGAAGGCTGCAGGGTATCTTCGGCGGTGGCTGCCGTCGATTGTGACGTTCGCCGAGCACGCTGTCGAGGGGTTCGAGGTTCCGTG
GACCTCGAACCCCGTCGAACGACTGATGGGCGAGGTCAGCAAGCGGTGCAAGAACCAGTGGATGCGCTGGACAGCAGAGGGATTGGAAGCGATACTCCAA
CTTCGGTTGGTGAAGTACACCGACCCCGAGTACTACCAAGCGTTCCTCGACGAACTGCTCCAGCGTTCGACCAAAACAGCAATCAACTGTGACCTCTCAA
TTGAGAGTACCAGCGGCAAAGTCTAGACCGCTTTGCGACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1338 bp | 445 aa | 89 | 1426 | + | No |
Description :
ORF sequence :
MHATIDVRFELSIDDNKTLPLATLAEAVTDQNLEAVLLESLVESLDAASVEALCGDKHAHGNGDQRFQRAGTDTRTAVTTAGEHEFSLHYIEDTAADNDE
SSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGFVSMPSPTTINRRAKKYGHKLKQFLPDCVADTDADTVIPDGTKCHSQDDDRSSHS
VQATLGEDTAEESRSLLDLSVNADWDETAAELDDIGAVTDDATVVSDADSGIVTAFTDEARDHQLDLVHVGRTLGYTLWDDGVFSLDRRKEIVSEVIDEV
SHLKNSVVKHHPEEEFEAIRSRIARTRERLEKTAWQLEQFGSAKAAGYLRRWLPSIVTFAEHAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTAEGLE
AILQLRLVKYTDPEYYQAFLDELLQRSTKTAINCDLSIESTSGKV
SSYFRPVEDVLSFDGQNRYQQDIAAKSVDLATSLSYRDAADHGDGFVSMPSPTTINRRAKKYGHKLKQFLPDCVADTDADTVIPDGTKCHSQDDDRSSHS
VQATLGEDTAEESRSLLDLSVNADWDETAAELDDIGAVTDDATVVSDADSGIVTAFTDEARDHQLDLVHVGRTLGYTLWDDGVFSLDRRKEIVSEVIDEV
SHLKNSVVKHHPEEEFEAIRSRIARTRERLEKTAWQLEQFGSAKAAGYLRRWLPSIVTFAEHAVEGFEVPWTSNPVERLMGEVSKRCKNQWMRWTAEGLE
AILQLRLVKYTDPEYYQAFLDELLQRSTKTAINCDLSIESTSGKV
Blast result :
Comments
ISH31 is 93% aa similar to ISH6.
References