ISNamo5
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis 8.8.11 |
DNA section
IS Length : 1277 bp
Ends
IR Length : 16
IRL : CTCAGCTTTGCACGTTGAAGTAGTAGCGTGACGAAGGAAGTGACAAGGAC
IRR : CTCAGCTTTGCACGTTAGCGTCAGCAGTTGAGTGAACGAAGAGGTGATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACATTTTAAC | TTATGTT | GTAGCGTACC | 7 |
DNA sequence
CTCAGCTTTGCACGTTGAAGTAGTAGCGTGACGAAGGAAGTGACAAGGACGGATGATGCCGATTACAGACTTCTTATCGTGCACGCGCGTGTTCGACGAG
TTTGAGTCGTTGTCTCCGGCACAACGTCATCACGCGAAAACTTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TTCTCCCAGCACAGGGCAAGCGTGCTCTCAATAAGTTCCTCACTGAGTACGACTGGGACGAACGGCAGTTCAACCACGAACGCCTCGAAGAACTCCAGAA
ACACGGTGAGACACGGTGGTCGAAAAAGGGCTACATCATCCTTGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGGCGCTTCTAC
GATCACGCTGAAGGTGACACCGTCTGGGGTCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACCGCCTATCCACTCACCTTTCGCCTCTATGAAC
AGCAAGACGAGGATAACCAGAACCACGACACAAAGTACGATTTGGCCCGTGAGATCATCACTGAACTCGAAAACGAGGTAGGTGTCCCGGCGGATACCTA
CCTCTTCGACTCGTGGTTCGCCCACGATTCTGGCCTCCCTGAACGCATCGAATCCTACGACAAGGACTGGATCGGCCCGCTCCGGAGCAACCGCAAGGTG
ACCTACGCCGGCGAGGAAATTCGCGTCGATGCGCTGGCAGAGCGCATCGACACGACTGAACGCGACATCGAGGACGATACCTATCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGCTGGGAGACGTGAAGCTGGCTATTGCCGAAAAAGAGGCCGAAGAGGACGAAGAGAACCCGGTCAAGTACCTCGCTACGAACAA
AATTGACGCACCGACCGAGCACGTGATTCGCTCCTACGGGATGCGATGGCGAATCGAGACGTTCTTCGAGGACTCGAAACAGGATTTAGGCTTGGGAGAC
TGCGAGATGCAGACCGAAGAAGGTGCCAGTCGGCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCTTGAGTCGAGCGCCTTGGGGA
CGGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACATTCCCTGAAAGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAACGATGACCG
AGGCGTCGACGATCTCATGGAAGAGATTGATCACCTCTTCGTTCACTCAACTGCTGACGCTAACGTGCAAAGCTGAG
TTTGAGTCGTTGTCTCCGGCACAACGTCATCACGCGAAAACTTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TTCTCCCAGCACAGGGCAAGCGTGCTCTCAATAAGTTCCTCACTGAGTACGACTGGGACGAACGGCAGTTCAACCACGAACGCCTCGAAGAACTCCAGAA
ACACGGTGAGACACGGTGGTCGAAAAAGGGCTACATCATCCTTGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGGCGCTTCTAC
GATCACGCTGAAGGTGACACCGTCTGGGGTCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACCGCCTATCCACTCACCTTTCGCCTCTATGAAC
AGCAAGACGAGGATAACCAGAACCACGACACAAAGTACGATTTGGCCCGTGAGATCATCACTGAACTCGAAAACGAGGTAGGTGTCCCGGCGGATACCTA
CCTCTTCGACTCGTGGTTCGCCCACGATTCTGGCCTCCCTGAACGCATCGAATCCTACGACAAGGACTGGATCGGCCCGCTCCGGAGCAACCGCAAGGTG
ACCTACGCCGGCGAGGAAATTCGCGTCGATGCGCTGGCAGAGCGCATCGACACGACTGAACGCGACATCGAGGACGATACCTATCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGCTGGGAGACGTGAAGCTGGCTATTGCCGAAAAAGAGGCCGAAGAGGACGAAGAGAACCCGGTCAAGTACCTCGCTACGAACAA
AATTGACGCACCGACCGAGCACGTGATTCGCTCCTACGGGATGCGATGGCGAATCGAGACGTTCTTCGAGGACTCGAAACAGGATTTAGGCTTGGGAGAC
TGCGAGATGCAGACCGAAGAAGGTGCCAGTCGGCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCTTGAGTCGAGCGCCTTGGGGA
CGGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACATTCCCTGAAAGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAACGATGACCG
AGGCGTCGACGATCTCATGGAAGAGATTGATCACCTCTTCGTTCACTCAACTGCTGACGCTAACGTGCAAAGCTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 53 | 1276 | + | No |
Chemistry : DDE
ORF sequence :
MMPITDFLSCTRVFDEFESLSPAQRHHAKTYATGLVAASNKTVAGIAREVLPAQGKRALNKFLTEYDWDERQFNHERLEELQKHGETRWSKKGYIILDDT
ITEKAGDEVPGVGRFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEQQDEDNQNHDTKYDLAREIITELENEVGVPADTYLFDSWFAHDSGLPERIE
SYDKDWIGPLRSNRKVTYAGEEIRVDALAERIDTTERDIEDDTYHIWTKKLPVSQLGDVKLAIAEKEAEEDEENPVKYLATNKIDAPTEHVIRSYGMRWR
IETFFEDSKQDLGLGDCEMQTEEGASRHWHLLMAAYSLVRLDLESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMEEIDHLFVHST
ADANVQS
ITEKAGDEVPGVGRFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEQQDEDNQNHDTKYDLAREIITELENEVGVPADTYLFDSWFAHDSGLPERIE
SYDKDWIGPLRSNRKVTYAGEEIRVDALAERIDTTERDIEDDTYHIWTKKLPVSQLGDVKLAIAEKEAEEDEENPVKYLATNKIDAPTEHVIRSYGMRWR
IETFFEDSKQDLGLGDCEMQTEEGASRHWHLLMAAYSLVRLDLESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMEEIDHLFVHST
ADANVQS
Blast result :
Comments
ISNamo5 is 96% aa similar to ISHala1.
IS_pep_1 is Nmlp_2547.
IS_pep_1 is Nmlp_2547.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513