ISNamo5

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis 8.8.11
DNA section
IS Length : 1277 bp

Ends


IR Length : 16

IRL : CTCAGCTTTGCACGTTGAAGTAGTAGCGTGACGAAGGAAGTGACAAGGAC
IRR : CTCAGCTTTGCACGTTAGCGTCAGCAGTTGAGTGAACGAAGAGGTGATCA

Insertion site


Left flankDirect repeatRight flankDR Length
ACATTTTAACTTATGTTGTAGCGTACC7

DNA sequence

CTCAGCTTTGCACGTTGAAGTAGTAGCGTGACGAAGGAAGTGACAAGGACGGATGATGCCGATTACAGACTTCTTATCGTGCACGCGCGTGTTCGACGAG
TTTGAGTCGTTGTCTCCGGCACAACGTCATCACGCGAAAACTTACGCCACAGGTCTTGTTGCGGCCAGCAACAAGACCGTGGCGGGCATCGCACGCGAAG
TTCTCCCAGCACAGGGCAAGCGTGCTCTCAATAAGTTCCTCACTGAGTACGACTGGGACGAACGGCAGTTCAACCACGAACGCCTCGAAGAACTCCAGAA
ACACGGTGAGACACGGTGGTCGAAAAAGGGCTACATCATCCTTGACGACACGATCACCGAGAAAGCCGGGGACGAAGTCCCCGGCGTCGGGCGCTTCTAC
GATCACGCTGAAGGTGACACCGTCTGGGGTCAAGACCTCATCTACGCCTTCTACGCTGACGACAAAACCGCCTATCCACTCACCTTTCGCCTCTATGAAC
AGCAAGACGAGGATAACCAGAACCACGACACAAAGTACGATTTGGCCCGTGAGATCATCACTGAACTCGAAAACGAGGTAGGTGTCCCGGCGGATACCTA
CCTCTTCGACTCGTGGTTCGCCCACGATTCTGGCCTCCCTGAACGCATCGAATCCTACGACAAGGACTGGATCGGCCCGCTCCGGAGCAACCGCAAGGTG
ACCTACGCCGGCGAGGAAATTCGCGTCGATGCGCTGGCAGAGCGCATCGACACGACTGAACGCGACATCGAGGACGATACCTATCACATCTGGACGAAGA
AGCTTCCCGTCTCCCAGCTGGGAGACGTGAAGCTGGCTATTGCCGAAAAAGAGGCCGAAGAGGACGAAGAGAACCCGGTCAAGTACCTCGCTACGAACAA
AATTGACGCACCGACCGAGCACGTGATTCGCTCCTACGGGATGCGATGGCGAATCGAGACGTTCTTCGAGGACTCGAAACAGGATTTAGGCTTGGGAGAC
TGCGAGATGCAGACCGAAGAAGGTGCCAGTCGGCACTGGCACCTTCTGATGGCTGCCTACAGTCTCGTTCGTCTTGATCTTGAGTCGAGCGCCTTGGGGA
CGGTTCGCTCGAAGGCGTCATCGCTTCGAGCGAACCTCGAACATTCCCTGAAAGAAGCCGTCTACAACCTTCTCTCGTGGGTTCGAGACAACGATGACCG
AGGCGTCGACGATCTCATGGAAGAGATTGATCACCTCTTCGTTCACTCAACTGCTGACGCTAACGTGCAAAGCTGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa531276+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMPITDFLSCTRVFDEFESLSPAQRHHAKTYATGLVAASNKTVAGIAREVLPAQGKRALNKFLTEYDWDERQFNHERLEELQKHGETRWSKKGYIILDDT
ITEKAGDEVPGVGRFYDHAEGDTVWGQDLIYAFYADDKTAYPLTFRLYEQQDEDNQNHDTKYDLAREIITELENEVGVPADTYLFDSWFAHDSGLPERIE
SYDKDWIGPLRSNRKVTYAGEEIRVDALAERIDTTERDIEDDTYHIWTKKLPVSQLGDVKLAIAEKEAEEDEENPVKYLATNKIDAPTEHVIRSYGMRWR
IETFFEDSKQDLGLGDCEMQTEEGASRHWHLLMAAYSLVRLDLESSALGTVRSKASSLRANLEHSLKEAVYNLLSWVRDNDDRGVDDLMEEIDHLFVHST
ADANVQS

 

Blast result :
Comments
ISNamo5 is 96% aa similar to ISHala1.
IS_pep_1 is Nmlp_2547.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513