ISHvo13
- Family IS4
- Group ISH8
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP001955 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV4 Haloferax volcanii DS2 plasmid pHV1 |
DNA section
IS Length : 1395 bp
Ends
IR Length : 17/18
IRL : CATCCGTGTTCGGTTAAGAAGCAAAATCGAGAGACTGCGCTCTGTTGACG
IRR : CATCTGTGTTCGGTTAAGCTCTAACCTCCGTTCTGAATGCTTCAGCTACT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTCAAAGAAAG | GGTACGGAC | GAAGTCCTATCG | 9 |
| TGCTTTGTGAGG | CTAGCATGTGAT | 0 |
DNA sequence
CATCCGTGTTCGGTTAAGAAGCAAAATCGAGAGACTGCGCTCTGTTGACGAAGTTATCGGTGTAGAACGCGTGGGGAGAGGTTGTGCTGAAGGAACTCTC
CCCAGACCTTATTCGACGGCGGCTCACTTCGCTCTTTCCAGGAGAGCTTATCGAAGACATCGCGCGCGAGCGCGATGTCGTCCAACGCCACCGTCGAATC
GATGTTACTGCCCTCGTTTGGACGCTCATCTTGGGATTCGCCGTCGGCGGCGAATCTCGCACGATCGCGGGGTTTCAACGTGCCTACGCCGCAGCGACCA
ATCAGACGCTCTCCCGTTCCAGCTTCTACGATCGGTTCACACCCGCACTCGGACAGTTACTCAGCGACCTCCTCGAACATGCTCTTGAGGAGGTCGCAGT
GCCACACACACTCGCCCCGCAGCTCCAGCAGTTCCGCGATGTGATGATTGCCGATGCAACCGTTTTCCGGTTGCATCGGCTCCTGAGCGAGTTTCCAGCG
ACGCATCCTGACCAGTCAGGCGCGAAACTTCATCTCGTCCACAACCTCACGAAACAGACGATCGAGCGGTTCGAACTCACCGACGAACGAAGCCACGAGA
GCAGCCAGTTCCGCACGGGGAACTGGCTGCGAGGGCGGTTGTTGCTGTTCGATCTCGGCTTCTACAGCTATCGTCGGTTCGCACTCATCGAGGAGAACGG
CGGCTTCTTTTTGAGTCGACTGAAGACGAACGCAAACCCACGAATCACAGAGGCACGTCGGAAATGGCGCGGGCGCGCCATTTCCTTACCAGACCGTCGT
CTTCAGGATGTTCTCGGTGGTCTTACACGCGAGATTATCGATGTAACCGCCGAGGTGAGCTTCAAACGGCGTCCGTACGGTGAGAAGCATTCGAGTGCGA
CGATAGAGTTCCGCGTCGTCGGTGTCCGCAACGAGGACACCGACGACTATCACCTGTACATCACGAACCTCCCAGATGAGTTCACGCCGGAACAAGTCGC
AGCGTTGTACGGTGTACGGTGGGAAGTAGAAGTGCTGTTCCGTGAGCTGAAATCGATGTACGGGCTGGAGAAGTTCCAGACAAGCAATCCAGCAATCGTG
GAGTTGCTGGTGGTAGCGGCTCTGCTGACGCTCACGGTCAGCAGAGCCTTGCTTGGCGTCTTTCAGAGGATGCACCCAGAAACGATGTTTCCACGAGAAC
GCTGGGCGAAGACCTTCCGGTCTTTCGCCCAGCTCATCCTCGAAGATCTAGCCCAGTCGTTCGGACATCCACCGCCGAACTTGGCTGAGCTCATGTTTTG
CAACGCACGCCAACCAGAGAAATCACGCCTCTTACTCAGCGAACGAGTAGCTGAAGCATTCAGAACGGAGGTTAGAGCTTAACCGAACACAGATG
CCCAGACCTTATTCGACGGCGGCTCACTTCGCTCTTTCCAGGAGAGCTTATCGAAGACATCGCGCGCGAGCGCGATGTCGTCCAACGCCACCGTCGAATC
GATGTTACTGCCCTCGTTTGGACGCTCATCTTGGGATTCGCCGTCGGCGGCGAATCTCGCACGATCGCGGGGTTTCAACGTGCCTACGCCGCAGCGACCA
ATCAGACGCTCTCCCGTTCCAGCTTCTACGATCGGTTCACACCCGCACTCGGACAGTTACTCAGCGACCTCCTCGAACATGCTCTTGAGGAGGTCGCAGT
GCCACACACACTCGCCCCGCAGCTCCAGCAGTTCCGCGATGTGATGATTGCCGATGCAACCGTTTTCCGGTTGCATCGGCTCCTGAGCGAGTTTCCAGCG
ACGCATCCTGACCAGTCAGGCGCGAAACTTCATCTCGTCCACAACCTCACGAAACAGACGATCGAGCGGTTCGAACTCACCGACGAACGAAGCCACGAGA
GCAGCCAGTTCCGCACGGGGAACTGGCTGCGAGGGCGGTTGTTGCTGTTCGATCTCGGCTTCTACAGCTATCGTCGGTTCGCACTCATCGAGGAGAACGG
CGGCTTCTTTTTGAGTCGACTGAAGACGAACGCAAACCCACGAATCACAGAGGCACGTCGGAAATGGCGCGGGCGCGCCATTTCCTTACCAGACCGTCGT
CTTCAGGATGTTCTCGGTGGTCTTACACGCGAGATTATCGATGTAACCGCCGAGGTGAGCTTCAAACGGCGTCCGTACGGTGAGAAGCATTCGAGTGCGA
CGATAGAGTTCCGCGTCGTCGGTGTCCGCAACGAGGACACCGACGACTATCACCTGTACATCACGAACCTCCCAGATGAGTTCACGCCGGAACAAGTCGC
AGCGTTGTACGGTGTACGGTGGGAAGTAGAAGTGCTGTTCCGTGAGCTGAAATCGATGTACGGGCTGGAGAAGTTCCAGACAAGCAATCCAGCAATCGTG
GAGTTGCTGGTGGTAGCGGCTCTGCTGACGCTCACGGTCAGCAGAGCCTTGCTTGGCGTCTTTCAGAGGATGCACCCAGAAACGATGTTTCCACGAGAAC
GCTGGGCGAAGACCTTCCGGTCTTTCGCCCAGCTCATCCTCGAAGATCTAGCCCAGTCGTTCGGACATCCACCGCCGAACTTGGCTGAGCTCATGTTTTG
CAACGCACGCCAACCAGAGAAATCACGCCTCTTACTCAGCGAACGAGTAGCTGAAGCATTCAGAACGGAGGTTAGAGCTTAACCGAACACAGATG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1299 bp | 432 aa | 84 | 1382 | + | No |
Chemistry : DDE
ORF sequence :
MLKELSPDLIRRRLTSLFPGELIEDIARERDVVQRHRRIDVTALVWTLILGFAVGGESRTIAGFQRAYAAATNQTLSRSSFYDRFTPALGQLLSDLLEHA
LEEVAVPHTLAPQLQQFRDVMIADATVFRLHRLLSEFPATHPDQSGAKLHLVHNLTKQTIERFELTDERSHESSQFRTGNWLRGRLLLFDLGFYSYRRFA
LIEENGGFFLSRLKTNANPRITEARRKWRGRAISLPDRRLQDVLGGLTREIIDVTAEVSFKRRPYGEKHSSATIEFRVVGVRNEDTDDYHLYITNLPDEF
TPEQVAALYGVRWEVEVLFRELKSMYGLEKFQTSNPAIVELLVVAALLTLTVSRALLGVFQRMHPETMFPRERWAKTFRSFAQLILEDLAQSFGHPPPNL
AELMFCNARQPEKSRLLLSERVAEAFRTEVRA
LEEVAVPHTLAPQLQQFRDVMIADATVFRLHRLLSEFPATHPDQSGAKLHLVHNLTKQTIERFELTDERSHESSQFRTGNWLRGRLLLFDLGFYSYRRFA
LIEENGGFFLSRLKTNANPRITEARRKWRGRAISLPDRRLQDVLGGLTREIIDVTAEVSFKRRPYGEKHSSATIEFRVVGVRNEDTDDYHLYITNLPDEF
TPEQVAALYGVRWEVEVLFRELKSMYGLEKFQTSNPAIVELLVVAALLTLTVSRALLGVFQRMHPETMFPRERWAKTFRSFAQLILEDLAQSFGHPPPNL
AELMFCNARQPEKSRLLLSERVAEAFRTEVRA
Blast result :
Comments
ISHvo13 is 70% aa similar to ISH8E.
IS_pep_1 is HVO_A0116.
IS_pep_1 is HVO_A0116.
References
1] Pfeiffer, F. (2013) Direct submission
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
2] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F., Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605