ISNph9

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR936257 ND Natronomonas pharaonis
Natronomonas pharaonis DSM 2160
DNA section
IS Length : 1462 bp

Ends


Left end : CTTGATACAGCGAGGGAATCCCGCCCTTCCCGTGAGTGATGAGTGTTCCGACTGGTCGGAACCGAGGAGCGAACAGGGCGGGAGGGAATCGCGTAAGCTC II struct. : No
Right end : GGGACGTTGAACGTGAACGGCATTTTCACGCCTACCACCGTCTAGTGGTCAGAACGGGAGTCCACCGACAAGCTCCGCCCTTCAGGGCGGAGAAGGTGAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ACGATAGACGCCATGTGTCTCCACTGAC

DNA sequence

CTTGATACAGCGAGGGAATCCCGCCCTTCCCGTGAGTGATGAGTGTTCCGACTGGTCGGAACCGAGGAGCGAACAGGGCGGGAGGGAATCGCGTAAGCTC
CATACAGCAATCCACCGGCTACACCATGTCTGACTCCCCAACGTTGTGCCACAATATGAGTAACTTCTATAACAACTCAAATTCATATGGCAACTGTGGA
GCTTCGACGTACTGCCGTCGTGAAACTCGACGTAGACGACGATGCTCACCGCCTTCTCCAAGAGACGATAGACCGCTTCAAACAGGCCGCTCAGATGGTT
GCAGACGACGGCTGGAACGGGACAGAAGATGGCTACATCGTCACGTCGAAAACTGAGCTACACGACCGGACGTACGACGACGTACGCGAAGCCACCGACG
AACTCAACGCTGACCTCGTATGCGCCGCTCGGAATCGAGCCGCCGACGCACTCGATTCCTGTGCCGAGAAACGCAAAGACGGGAAAAATCCCTCGAAGCC
ACAGTTCACATCCGATTCAGTCGTTTACAACCTCAACGCAATCACCTACTACGACGACTACGCCACGCTTGCGACCGTGGACGGACGTATTGAAGCTGAA
TACGTCCTGCCAGACGAGGACGTACCACCGACAACCTACTTCTCTGAAGACTGGGAGAAACGTGAGGCCACGTTGCATCACCGCGACGGCGACTACTACC
TCCACATCGCTGTTGTCAGAGAGACGGAGACAGAGCCGGAAGATGCCGAGAACGGAACGGTTCTCGGCGTAGACTTGAACGTGGACGGACATCTCGCCGT
CACTTCGACTGGCGCGTTCATCGGCAACGCCGACTATCTCAATCACAAGCGGCGTGAATACGAGAAGCGGCGTGGACAGATGCAACAGACGGGTACACGG
TCGGCACACCTCACGATGAAATCACTTGGTGGGCGATTCGCCAACTGGAGCGAAGACTACCTGCATCGTGTCTCGAAGACATTGGTACAGGAAGCTCTCG
CCCACGACTGTACGCACATCGCATTCGAGAAACTGACACATATCCGCGAACGCATCTCCAACGCTTCCAAATTCCAGCAGTGGGCGTTCCGTCGCATCCA
AGAGTACACCGAGTACAAAGCCGCCGAGTACGGGATTGCGGTCGAGAAAATCGCGCCACAGTACACCAGTCAGCGGTGTAGTCACGTTGACTGTAGCTTC
ACCCACGACGACAACAGAGACGGCGACGAGTTCTGTTGTCTCAAATGCGACCGCGAATACCACGCCGACTACAACGCCGCCAAGAACATCGCTCGGAAAC
TACTCCAGAACTGGCACAAGTCTGGTTCTGGAGGGGCAACCAGTCACCTTGCCCTGAAGTCGGGGACGTTGAACGTGAACGGCATTTTCACGCCTACCAC
CGTCTAGTGGTCAGAACGGGAGTCCACCGACAAGCTCCGCCCTTCAGGGCGGAGAAGGTGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1221 bp406 aa1871407+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MATVELRRTAVVKLDVDDDAHRLLQETIDRFKQAAQMVADDGWNGTEDGYIVTSKTELHDRTYDDVREATDELNADLVCAARNRAADALDSCAEKRKDGK
NPSKPQFTSDSVVYNLNAITYYDDYATLATVDGRIEAEYVLPDEDVPPTTYFSEDWEKREATLHHRDGDYYLHIAVVRETETEPEDAENGTVLGVDLNVD
GHLAVTSTGAFIGNADYLNHKRREYEKRRGQMQQTGTRSAHLTMKSLGGRFANWSEDYLHRVSKTLVQEALAHDCTHIAFEKLTHIRERISNASKFQQWA
FRRIQEYTEYKAAEYGIAVEKIAPQYTSQRCSHVDCSFTHDDNRDGDEFCCLKCDREYHADYNAAKNIARKLLQNWHKSGSGGATSHLALKSGTLNVNGI
FTPTTV

 

Blast result :
Comments
ISNph9 is 75% (TnpB) aa similar to ISNph19.
The characteristic secondary structure of the IS200/IS605 family member is missing on the left end of this element.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343.