ISNph9
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CR936257 | ND | Natronomonas pharaonis | Natronomonas pharaonis DSM 2160 |
DNA section
IS Length : 1462 bp
Ends
Left end : CTTGATACAGCGAGGGAATCCCGCCCTTCCCGTGAGTGATGAGTGTTCCGACTGGTCGGAACCGAGGAGCGAACAGGGCGGGAGGGAATCGCGTAAGCTC II struct. : No
Right end : GGGACGTTGAACGTGAACGGCATTTTCACGCCTACCACCGTCTAGTGGTCAGAACGGGAGTCCACCGACAAGCTCCGCCCTTCAGGGCGGAGAAGGTGAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ACGATAGACG | CCAT | GTGTCTCCAC | TGAC |
DNA sequence
CTTGATACAGCGAGGGAATCCCGCCCTTCCCGTGAGTGATGAGTGTTCCGACTGGTCGGAACCGAGGAGCGAACAGGGCGGGAGGGAATCGCGTAAGCTC
CATACAGCAATCCACCGGCTACACCATGTCTGACTCCCCAACGTTGTGCCACAATATGAGTAACTTCTATAACAACTCAAATTCATATGGCAACTGTGGA
GCTTCGACGTACTGCCGTCGTGAAACTCGACGTAGACGACGATGCTCACCGCCTTCTCCAAGAGACGATAGACCGCTTCAAACAGGCCGCTCAGATGGTT
GCAGACGACGGCTGGAACGGGACAGAAGATGGCTACATCGTCACGTCGAAAACTGAGCTACACGACCGGACGTACGACGACGTACGCGAAGCCACCGACG
AACTCAACGCTGACCTCGTATGCGCCGCTCGGAATCGAGCCGCCGACGCACTCGATTCCTGTGCCGAGAAACGCAAAGACGGGAAAAATCCCTCGAAGCC
ACAGTTCACATCCGATTCAGTCGTTTACAACCTCAACGCAATCACCTACTACGACGACTACGCCACGCTTGCGACCGTGGACGGACGTATTGAAGCTGAA
TACGTCCTGCCAGACGAGGACGTACCACCGACAACCTACTTCTCTGAAGACTGGGAGAAACGTGAGGCCACGTTGCATCACCGCGACGGCGACTACTACC
TCCACATCGCTGTTGTCAGAGAGACGGAGACAGAGCCGGAAGATGCCGAGAACGGAACGGTTCTCGGCGTAGACTTGAACGTGGACGGACATCTCGCCGT
CACTTCGACTGGCGCGTTCATCGGCAACGCCGACTATCTCAATCACAAGCGGCGTGAATACGAGAAGCGGCGTGGACAGATGCAACAGACGGGTACACGG
TCGGCACACCTCACGATGAAATCACTTGGTGGGCGATTCGCCAACTGGAGCGAAGACTACCTGCATCGTGTCTCGAAGACATTGGTACAGGAAGCTCTCG
CCCACGACTGTACGCACATCGCATTCGAGAAACTGACACATATCCGCGAACGCATCTCCAACGCTTCCAAATTCCAGCAGTGGGCGTTCCGTCGCATCCA
AGAGTACACCGAGTACAAAGCCGCCGAGTACGGGATTGCGGTCGAGAAAATCGCGCCACAGTACACCAGTCAGCGGTGTAGTCACGTTGACTGTAGCTTC
ACCCACGACGACAACAGAGACGGCGACGAGTTCTGTTGTCTCAAATGCGACCGCGAATACCACGCCGACTACAACGCCGCCAAGAACATCGCTCGGAAAC
TACTCCAGAACTGGCACAAGTCTGGTTCTGGAGGGGCAACCAGTCACCTTGCCCTGAAGTCGGGGACGTTGAACGTGAACGGCATTTTCACGCCTACCAC
CGTCTAGTGGTCAGAACGGGAGTCCACCGACAAGCTCCGCCCTTCAGGGCGGAGAAGGTGAC
CATACAGCAATCCACCGGCTACACCATGTCTGACTCCCCAACGTTGTGCCACAATATGAGTAACTTCTATAACAACTCAAATTCATATGGCAACTGTGGA
GCTTCGACGTACTGCCGTCGTGAAACTCGACGTAGACGACGATGCTCACCGCCTTCTCCAAGAGACGATAGACCGCTTCAAACAGGCCGCTCAGATGGTT
GCAGACGACGGCTGGAACGGGACAGAAGATGGCTACATCGTCACGTCGAAAACTGAGCTACACGACCGGACGTACGACGACGTACGCGAAGCCACCGACG
AACTCAACGCTGACCTCGTATGCGCCGCTCGGAATCGAGCCGCCGACGCACTCGATTCCTGTGCCGAGAAACGCAAAGACGGGAAAAATCCCTCGAAGCC
ACAGTTCACATCCGATTCAGTCGTTTACAACCTCAACGCAATCACCTACTACGACGACTACGCCACGCTTGCGACCGTGGACGGACGTATTGAAGCTGAA
TACGTCCTGCCAGACGAGGACGTACCACCGACAACCTACTTCTCTGAAGACTGGGAGAAACGTGAGGCCACGTTGCATCACCGCGACGGCGACTACTACC
TCCACATCGCTGTTGTCAGAGAGACGGAGACAGAGCCGGAAGATGCCGAGAACGGAACGGTTCTCGGCGTAGACTTGAACGTGGACGGACATCTCGCCGT
CACTTCGACTGGCGCGTTCATCGGCAACGCCGACTATCTCAATCACAAGCGGCGTGAATACGAGAAGCGGCGTGGACAGATGCAACAGACGGGTACACGG
TCGGCACACCTCACGATGAAATCACTTGGTGGGCGATTCGCCAACTGGAGCGAAGACTACCTGCATCGTGTCTCGAAGACATTGGTACAGGAAGCTCTCG
CCCACGACTGTACGCACATCGCATTCGAGAAACTGACACATATCCGCGAACGCATCTCCAACGCTTCCAAATTCCAGCAGTGGGCGTTCCGTCGCATCCA
AGAGTACACCGAGTACAAAGCCGCCGAGTACGGGATTGCGGTCGAGAAAATCGCGCCACAGTACACCAGTCAGCGGTGTAGTCACGTTGACTGTAGCTTC
ACCCACGACGACAACAGAGACGGCGACGAGTTCTGTTGTCTCAAATGCGACCGCGAATACCACGCCGACTACAACGCCGCCAAGAACATCGCTCGGAAAC
TACTCCAGAACTGGCACAAGTCTGGTTCTGGAGGGGCAACCAGTCACCTTGCCCTGAAGTCGGGGACGTTGAACGTGAACGGCATTTTCACGCCTACCAC
CGTCTAGTGGTCAGAACGGGAGTCCACCGACAAGCTCCGCCCTTCAGGGCGGAGAAGGTGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 187 | 1407 | + | No |
AG : TnpB
ORF sequence :
MATVELRRTAVVKLDVDDDAHRLLQETIDRFKQAAQMVADDGWNGTEDGYIVTSKTELHDRTYDDVREATDELNADLVCAARNRAADALDSCAEKRKDGK
NPSKPQFTSDSVVYNLNAITYYDDYATLATVDGRIEAEYVLPDEDVPPTTYFSEDWEKREATLHHRDGDYYLHIAVVRETETEPEDAENGTVLGVDLNVD
GHLAVTSTGAFIGNADYLNHKRREYEKRRGQMQQTGTRSAHLTMKSLGGRFANWSEDYLHRVSKTLVQEALAHDCTHIAFEKLTHIRERISNASKFQQWA
FRRIQEYTEYKAAEYGIAVEKIAPQYTSQRCSHVDCSFTHDDNRDGDEFCCLKCDREYHADYNAAKNIARKLLQNWHKSGSGGATSHLALKSGTLNVNGI
FTPTTV
NPSKPQFTSDSVVYNLNAITYYDDYATLATVDGRIEAEYVLPDEDVPPTTYFSEDWEKREATLHHRDGDYYLHIAVVRETETEPEDAENGTVLGVDLNVD
GHLAVTSTGAFIGNADYLNHKRREYEKRRGQMQQTGTRSAHLTMKSLGGRFANWSEDYLHRVSKTLVQEALAHDCTHIAFEKLTHIRERISNASKFQQWA
FRRIQEYTEYKAAEYGIAVEKIAPQYTSQRCSHVDCSFTHDDNRDGDEFCCLKCDREYHADYNAAKNIARKLLQNWHKSGSGGATSHLALKSGTLNVNGI
FTPTTV
Blast result :
Comments
ISNph9 is 75% (TnpB) aa similar to ISNph19.
The characteristic secondary structure of the IS200/IS605 family member is missing on the left end of this element.
The characteristic secondary structure of the IS200/IS605 family member is missing on the left end of this element.
References
1] Falb M., Pfeiffer F., Palm P., Rodewald K., Hickmann V., Tittor J., Oesterhelt D. (2005) Genome Res. 15: 1336-1343.