ISNamo1

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis
DNA section
IS Length : 1111 bp

Ends


IR Length : 11/12

IRL : TGCTCCGTTGAATACCGACGCCGTCTGCGGATTATATCGCTGATTTCAGG
IRR : TGCTCTGTTGAACGCAAGACAGCGACAGAATCAGTATTATGATATTAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCGAGACCACTGTTGGTTGAAATGCCC8
CGGCCCTTCAGAATATTTTGATGATGCC8
GTACCCTACTCGATAAGACGATGGGTTA8

DNA sequence

TGCTCCGTTGAATACCGACGCCGTCTGCGGATTATATCGCTGATTTCAGGGGAATTGGACGCCGTCTTGCGATATGGGGCGTCTCAGGACCCTCGCACAA
ACGTTTCGAGACTTTGCCACAAACCACGTAGAGGAACCAGACGTACCCGCCGCGCCGGACGGCGCGGACGGGTACGCTAACTCCACGAAAATCGCGCTGC
TTCTACTTAAAGAGGAAATCAATAAACCACTCCGGAAGCTCGAAGATTACCTGAACGAGATGCCGGGAATCCTCGATGTGTTCGGCCTTGAGAAATCTCC
AGATTACTCGTCGTTCAGCGTTTGGGACGGTGAATTTCCGATGAAAGAGTTGCGCCGCCTGCTCCGCCAGTCAGCGGAGCAGGCGGGGCTTTCGGGCACT
GCGTCGATTGATGCCAGTGGCTTCCAACGAGATCAAGCTAGCTCACACTACCGAAATCGAGTCGGTTACTCGTTCAATGCTATGAAGACGACGCTGCTCG
TTGATACGGACTCACTTGCCATCATGGATGCTCATTTCACGACGAAGAAAGCCTATGACGGCCATATCGGACTGCAGGTCTTTCGGCGCAACGCCGAAGA
CCTGCAGGAGTTGCTGGCTGACAAGATGTACTCGTGGAGCGATCTCCGTGAAGCCTGCCGTGACGCGTCAACGCGACCAGTAATCAAACACTGTGAGCAA
AACGGACTCAAGAAGGCCCACAACGCTCGAATTGACGACGATGTCTACAATCAGCGGTCAATGAGCGAGACAGTGTTTGCGATGGTGAAGGACGGTGGCG
ATGAGATTCGCTCCCGGAGTTGGCACGGCCAATTCCGGGAGCTCACGCGCAAGTGCATCGTACATAACCTGACGCAGGCGGCGAGTTAGGCTCGCCGCCT
GCTCTCCTTCTCTGGACGTATCCGTGAGAGGCATCGCCATCGTCCACCTCATTCTTCGTGCGGTATCTTGTGAAACTGATGTTTTGACCACTGCGTAAAG
CCGCTAAAATTGAATCGTCCGATCTTAGAATCCGCAGAGAGAGCGTAGCTACCCGTGAAAAATCTAATATCATAATACTGATTCTGTCGCTGTCTTGCGT
TCAACAGAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
816 bp271 aa74889+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGRLRTLAQTFRDFATNHVEEPDVPAAPDGADGYANSTKIALLLLKEEINKPLRKLEDYLNEMPGILDVFGLEKSPDYSSFSVWDGEFPMKELRRLLRQS
AEQAGLSGTASIDASGFQRDQASSHYRNRVGYSFNAMKTTLLVDTDSLAIMDAHFTTKKAYDGHIGLQVFRRNAEDLQELLADKMYSWSDLREACRDAST
RPVIKHCEQNGLKKAHNARIDDDVYNQRSMSETVFAMVKDGGDEIRSRSWHGQFRELTRKCIVHNLTQAAS

 

Blast result :
Comments
ISNamo1 is 74% aa similar to ISH1.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513