ISNamo2
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HF582854 | ND | Natronomonas moolapensis | Natronomonas moolapensis |
DNA section
IS Length : 937 bp
Ends
IR Length : 26/32
IRL : GGCTCTATTGAATCCACGGACGGCGTCGGGGTAAGTCGTCAGAACGATTG
IRR : GGCTCTATTGAATCCGCATACAGCGATGGGGTTCATTGTTTGAGGGTTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGCGGCATAAT | GTGCGTAAT | GAACTGGCAGCA | 9 |
DNA sequence
GGCTCTATTGAATCCACGGACGGCGTCGGGGTAAGTCGTCAGAACGATTGAAATGAAGCGGAAGAAGTGCTTCTGTGCAAAAGACTCTCTTCCGCTTCGT
CAAACAAGCCGTCTCGGTCGCACGAAAACTTACTGATGCTGCGCTGATGCAGATCAGCCATCCTGCCGGCAACGGAGTTGCCGGCTGGAAGCACGCCGTC
CTGCATTTTCTCCGGCTTCATATGGATGCGACACTGCAAGAGGTCCTTGATTGGGCTGAAGAGATGGAGCGGGTACGAGCCGCGCTCGACTTAGAGCGCG
GCGCGTTCCCCGGCCCTTCGGCACTCTGTAAGTCGTTTGACCGCGCACCGATGCGAATCTGGCGCGAGCTGCTCCGACTCTTGTCGGAGCTGCTCGAGCA
GTCTGGTCACGCCGCTATCGACGCCACCTATTTCGACCGCCATCAGGCGTCAACTCACTATCTCAACCGCTGTGATCGTAAGGTACAGACCGTCCAAGCG
ACGTTCCTCGTCGATACCGCCCACGGCGCGGTGATCGACGTACACTGTAGCACGAAGTGGCCAAACGGGACGAACGTCGGCCCGCAGGTCGCCCTGCGGA
ACGCAGGCGACCTGCGGAGCCTCGCCGCCGACAAAGGCTACGACGATATGAGCTTCCGAGACCAACTCCGTTCAGAAGGCGTAAGACCGCTGATTAAACA
CCGCGTCTTCGCACCCTACGACCACGCGCACAACGCGCGGATCGAAGACGATCTCTACAATCAGCGGTCGGTCTGTGAGACTGTGAACTCGGTGATTAAG
CGCTCGTACGGCTCCGCCGTCCGAGCGCGTGCCTGGTACCGTCAGTTCCGAGAAATCACTCTCGCCGCGGCAGTCTACAACATCGAACGAACCCTCAAAC
AATGAACCCCATCGCTGTATGCGGATTCAATAGAGCC
CAAACAAGCCGTCTCGGTCGCACGAAAACTTACTGATGCTGCGCTGATGCAGATCAGCCATCCTGCCGGCAACGGAGTTGCCGGCTGGAAGCACGCCGTC
CTGCATTTTCTCCGGCTTCATATGGATGCGACACTGCAAGAGGTCCTTGATTGGGCTGAAGAGATGGAGCGGGTACGAGCCGCGCTCGACTTAGAGCGCG
GCGCGTTCCCCGGCCCTTCGGCACTCTGTAAGTCGTTTGACCGCGCACCGATGCGAATCTGGCGCGAGCTGCTCCGACTCTTGTCGGAGCTGCTCGAGCA
GTCTGGTCACGCCGCTATCGACGCCACCTATTTCGACCGCCATCAGGCGTCAACTCACTATCTCAACCGCTGTGATCGTAAGGTACAGACCGTCCAAGCG
ACGTTCCTCGTCGATACCGCCCACGGCGCGGTGATCGACGTACACTGTAGCACGAAGTGGCCAAACGGGACGAACGTCGGCCCGCAGGTCGCCCTGCGGA
ACGCAGGCGACCTGCGGAGCCTCGCCGCCGACAAAGGCTACGACGATATGAGCTTCCGAGACCAACTCCGTTCAGAAGGCGTAAGACCGCTGATTAAACA
CCGCGTCTTCGCACCCTACGACCACGCGCACAACGCGCGGATCGAAGACGATCTCTACAATCAGCGGTCGGTCTGTGAGACTGTGAACTCGGTGATTAAG
CGCTCGTACGGCTCCGCCGTCCGAGCGCGTGCCTGGTACCGTCAGTTCCGAGAAATCACTCTCGCCGCGGCAGTCTACAACATCGAACGAACCCTCAAAC
AATGAACCCCATCGCTGTATGCGGATTCAATAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
828 bp | 276 aa | 75 | 902 | + | No |
Chemistry : DDE
ORF sequence :
MQKTLFRFVKQAVSVARKLTDAALMQISHPAGNGVAGWKHAVLHFLRLHMDATLQEVLDWAEEMERVRAALDLERGAFPGPSALCKSFDRAPMRIWRELL
RLLSELLEQSGHAAIDATYFDRHQASTHYLNRCDRKVQTVQATFLVDTAHGAVIDVHCSTKWPNGTNVGPQVALRNAGDLRSLAADKGYDDMSFRDQLRS
EGVRPLIKHRVFAPYDHAHNARIEDDLYNQRSVCETVNSVIKRSYGSAVRARAWYRQFREITLAAAVYNIERTLKQ
RLLSELLEQSGHAAIDATYFDRHQASTHYLNRCDRKVQTVQATFLVDTAHGAVIDVHCSTKWPNGTNVGPQVALRNAGDLRSLAADKGYDDMSFRDQLRS
EGVRPLIKHRVFAPYDHAHNARIEDDLYNQRSVCETVNSVIKRSYGSAVRARAWYRQFREITLAAAVYNIERTLKQ
Blast result :
Comments
ISNamo2 is 86% aa similar to ISHma10.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513