ISNamo2

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
HF582854 ND Natronomonas moolapensis
Natronomonas moolapensis
DNA section
IS Length : 937 bp

Ends


IR Length : 26/32

IRL : GGCTCTATTGAATCCACGGACGGCGTCGGGGTAAGTCGTCAGAACGATTG
IRR : GGCTCTATTGAATCCGCATACAGCGATGGGGTTCATTGTTTGAGGGTTCG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGCGGCATAATGTGCGTAATGAACTGGCAGCA9

DNA sequence

GGCTCTATTGAATCCACGGACGGCGTCGGGGTAAGTCGTCAGAACGATTGAAATGAAGCGGAAGAAGTGCTTCTGTGCAAAAGACTCTCTTCCGCTTCGT
CAAACAAGCCGTCTCGGTCGCACGAAAACTTACTGATGCTGCGCTGATGCAGATCAGCCATCCTGCCGGCAACGGAGTTGCCGGCTGGAAGCACGCCGTC
CTGCATTTTCTCCGGCTTCATATGGATGCGACACTGCAAGAGGTCCTTGATTGGGCTGAAGAGATGGAGCGGGTACGAGCCGCGCTCGACTTAGAGCGCG
GCGCGTTCCCCGGCCCTTCGGCACTCTGTAAGTCGTTTGACCGCGCACCGATGCGAATCTGGCGCGAGCTGCTCCGACTCTTGTCGGAGCTGCTCGAGCA
GTCTGGTCACGCCGCTATCGACGCCACCTATTTCGACCGCCATCAGGCGTCAACTCACTATCTCAACCGCTGTGATCGTAAGGTACAGACCGTCCAAGCG
ACGTTCCTCGTCGATACCGCCCACGGCGCGGTGATCGACGTACACTGTAGCACGAAGTGGCCAAACGGGACGAACGTCGGCCCGCAGGTCGCCCTGCGGA
ACGCAGGCGACCTGCGGAGCCTCGCCGCCGACAAAGGCTACGACGATATGAGCTTCCGAGACCAACTCCGTTCAGAAGGCGTAAGACCGCTGATTAAACA
CCGCGTCTTCGCACCCTACGACCACGCGCACAACGCGCGGATCGAAGACGATCTCTACAATCAGCGGTCGGTCTGTGAGACTGTGAACTCGGTGATTAAG
CGCTCGTACGGCTCCGCCGTCCGAGCGCGTGCCTGGTACCGTCAGTTCCGAGAAATCACTCTCGCCGCGGCAGTCTACAACATCGAACGAACCCTCAAAC
AATGAACCCCATCGCTGTATGCGGATTCAATAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
828 bp276 aa75902+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQKTLFRFVKQAVSVARKLTDAALMQISHPAGNGVAGWKHAVLHFLRLHMDATLQEVLDWAEEMERVRAALDLERGAFPGPSALCKSFDRAPMRIWRELL
RLLSELLEQSGHAAIDATYFDRHQASTHYLNRCDRKVQTVQATFLVDTAHGAVIDVHCSTKWPNGTNVGPQVALRNAGDLRSLAADKGYDDMSFRDQLRS
EGVRPLIKHRVFAPYDHAHNARIEDDLYNQRSVCETVNSVIKRSYGSAVRARAWYRQFREITLAAAVYNIERTLKQ

 

Blast result :
Comments
ISNamo2 is 86% aa similar to ISHma10.
References
1] Pfeiffer, F. (2013) Direct submission
2] Dyall-Smith, M.L., Pfeiffer, F., Oberwinkler, T., Klee, K., Rampp, M., Palm, P., Gross, K., Schuster, S.C., Oesterhelt, D. (2013) Genome Announc. 1: e0009513