ISMva4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008726 ND Mycobacterium vanbaalenii
Mycobacterium vanbaalenii PYR-1
DNA section
IS Length : 1459 bp

Ends


IR Length : 20/27

IRL : GGGGTGTCAGATGGTCTGTGTAAGTCCTGACGGAAGGATCTCAGGACATG
IRR : GAGCGTGTCAAGTTTTTTGTGTAAGTCGGTTGTGTGATTTTCCTGGTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GCTGCAACAACATGCCCAGCCCTTTCGGG8
ATGCCCAGCCCTTTCGGGCAAAATCCGCG8

DNA sequence

GGGGTGTCAGATGGTCTGTGTAAGTCCTGACGGAAGGATCTCAGGACATGGTGACAGGCAAGGACGAGGATTTGCAGCTGGGTGAGGTGGTTTCCACCGT
GGAGATGGCCGAGGCGCTTCGGGCTTCGGGTGCGGTGGACGATTTGCTGGCTCAGATCGATTCCGGCGAGGTGGCGCTGACCGGTGAGGGTGGCCTGCTG
CCCGGGCTGATCAAGCTCGCTCTCGAGCGGGGCCTGGCCGCGGAGTTGACCGATCATCTGGGTTATGAGAAGGGCGACCCGGCTGGTCGGGCGCTGCCCA
ATGCCCGCAACGGCAGCTCAGCCAAGACGGTGCAGACCGAGGCCGGCCCGGTCCCGTTGGATGTCCCGCGTGATCGTGACGGCTCGTTCACGCCGCGGCT
GGTGCCCAAGGGGCAGCGCCGCATCGGCGGGCTCGACGACATGATCATCTCGCTGTATGCCGGTGGAATGACGTTGCGCGACATCCAATTTCACCTTGCT
TCCACGATCGGAACCGACGTTTCGCATGAGACGATCTCCAAGATCGTCGACGAGATCTCCGAGGAGGTGTTGGTCTGGCAGCGCCGGCCGCTGGACCCGA
TCTACCCGGTGATCTACCTCGACGCGATCGTGGTCAAGGTCAAAGACGGCGGCCACACCCGCAACAAGGCCGCTCACATCGCCGTGGGCGTCGATATGGC
CGGAATCAAGCACGTCCTGGGCATCTGGGTCCAGCAGAACGAAGGAGCGGCGTTTTGGGCCTCGGTGTGTGCCGACCTGTCCAACCGCGGTATCCGCGAC
GTGCTGATCGTGTGCTGCGATGGGCTCACCGGCTTCCCCGAAGCGATCGCAGCGACCTGGTCGCAAGCAGCGGTTCAGACCTGTGTGGTGCACCTGATTC
GCAACGCGTTGCGGTTCGTGTCCTACAGCGACCGCAAGACGGTGGCTGCAGCACTGAAACCGATCTACACCGCACCCAACGCCGAGGCCGCCCGCGCCGA
GCTCGACGCGTTCACCGCATCGGAACTGGGTAAGAAAAATCCCACGGTGACACGGGTTTTCGAGCGGGCATGGGAGCAGTTCATTCCGTTCCTGGCGTTC
CCGCCCGAGCTGCGCCGGGTGATCTACACCACGAACTCGATCGAATCGCTGAACTACCAGCTGCGAAAGGTCACCAAGACCCGCGGCCAGTTCCCCAACG
ACGCCGCCGCGGTGAAACTGCTCTGGCTGGCCATCTGCAACATCGAGGACAAACGCGCCGCTGAACGCGCCAAAGAACGCAAACAGAAACGTTGCCGAAC
AGCCCCCGGACGACTTGTGGAAGGACAGGTCGTCACCAACTGGAAGAAAGCCCTCGAACAACTCGTTCTGGTCTACCCGGACCGCATCGAGCCGTATCTG
TAACGACAACCACCAGGAAAATCACACAACCGACTTACACAAAAAACTTGACACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1356 bp451 aa491404+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVTGKDEDLQLGEVVSTVEMAEALRASGAVDDLLAQIDSGEVALTGEGGLLPGLIKLALERGLAAELTDHLGYEKGDPAGRALPNARNGSSAKTVQTEAG
PVPLDVPRDRDGSFTPRLVPKGQRRIGGLDDMIISLYAGGMTLRDIQFHLASTIGTDVSHETISKIVDEISEEVLVWQRRPLDPIYPVIYLDAIVVKVKD
GGHTRNKAAHIAVGVDMAGIKHVLGIWVQQNEGAAFWASVCADLSNRGIRDVLIVCCDGLTGFPEAIAATWSQAAVQTCVVHLIRNALRFVSYSDRKTVA
AALKPIYTAPNAEAARAELDAFTASELGKKNPTVTRVFERAWEQFIPFLAFPPELRRVIYTTNSIESLNYQLRKVTKTRGQFPNDAAAVKLLWLAICNIE
DKRAAERAKERKQKRCRTAPGRLVEGQVVTNWKKALEQLVLVYPDRIEPYL

 

Blast result :
Comments
ISMva4 is 93% aa similar to ISMgi5.
References