ISGte1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_BAFD01000106.1 | ND | Gordonia terrae | Gordonia terrae NBRC 100016 |
DNA section
IS Length : 1503 bp
Ends
IR Length : 23/29
IRL : GGGGGTGTCAGATGGTCTGTGTAAGTCCAGTGCTCATCAGTGAGAGGACA
IRR : GAGCTTGTCAAGATGTCTGTGTAAGACCGTGACTCCTGGGTTTCCTGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGCGCAGT | GGGTGATG | ACGTCCACGA | 8 |
DNA sequence
GGGGGTGTCAGATGGTCTGTGTAAGTCCAGTGCTCATCAGTGAGAGGACAATCTATGAGCATGGCGTTAGACGACAAACAGCAGAGCGACGACCAGCAGC
TGTCTGAGCTGGCCGAGCCGCGTTCGACCGCGGAGGTAGCCGAGGCGCTGCAGGCCTCGGGCATGGTCGATGAGTTGCTGGCCCAGATTGATACCGGCCA
GGTCCAGATCACCGGCGACGGCGGCCTGATTCCGGGTTTGATCAAACTCGCCCTCGAACGCGGTCTGAAGGCCGAGCTGACTGATCACCTCGGTTATGAG
AAGGGCGATCCGGCCGGTCGGGAACTGCCCAACGCCCGCAACGGGTCGAGCCCGAAAACGGTGCAGTCCGAGGCCGGGCCGGTCGAGCTGAACGTCCCTC
GAGACCGTGCCGGCACCTTCACCCCACGCCTGGTCCCGAAAGGCTCGCGCCGGCTCGGCGGCCTCGATGACATGATCATCTCGCTCTATGCCGGAGGCAT
GACGTTACGCGACATCCAGCATCACTTAGCCTCGACGATCGGCACAGATCTATCCCACGAGACGATCTCCAAGATCTGCGACGAGGTCCTCGACGCGGTC
GATGAATGGCAGAACCGGCCGCTGGAAGCCTTGTATCCCGTCATCTACCTCGACGCCCTGGTGGTAAAAGTCAAAGACGGCGCTCACGTCCGAAACAAGC
ACGCCCACATCGCTATTGGCGTCGACATGACCGGCGTCAAGCACGTCCTGGGTATTTGGATACAAGCCGAGGAAGGCGCGAAGTTCTGGGCCGGGGTGTG
TGCAAATCTGGCCAACCGCGGCGTACGTGACGTGCTCATCGTGTGCTGCGACGGGCTGACCGGATTCCCCGAGGCGATCGAGACGACCTGGCCACTGGCC
ACGGTGCAGACCTGCGTGGTGCATCTGATCCGCAACTCGATGCGGTTCGTGAACTACAAGGACCGCAAAGACGTGGCGCGGGCGATCAAACCGATATACA
CCGCCCCCGACGCCGAGACCGCCCGCCGCGAATGGGAGGCCTTCCGAGACTCCGAGTTAGGACTCAAATACCCGAGTGCGGCAGCAGCTTTCGATCGAGC
GTGGGACCGGTTCATTCCGTTCTTGGCGTTCCCGCCCGAGCTCCGCAAGGTCATCTACACCACCAACTCGATCGAGTCGCTGAACTATCAGCTCCGCAAG
GTCATCAAGAACCGGGGACACTTCCCCAACGACATCGCGGCGCGCAAACTGCTGTGGCTGGCGATCTGCGACATCGAGGACAAACGGGCCCGGCAACGCG
AGAAGGAACGCGGCAAGCCCGCCGCCACCCGCAAAGCCCCCGGACGACTCGTCGAGGGCCAGGTCGTGACGAACTGGAAACAGGCCCTCGGGCAACTCGC
CCTGGCCTACCCCGACCGCATCGAACCCCACCTCAACTAGACCCAACCAGCAACTACAGGAAACCCAGGAGTCACGGTCTTACACAGACATCTTGACAAG
CTC
TGTCTGAGCTGGCCGAGCCGCGTTCGACCGCGGAGGTAGCCGAGGCGCTGCAGGCCTCGGGCATGGTCGATGAGTTGCTGGCCCAGATTGATACCGGCCA
GGTCCAGATCACCGGCGACGGCGGCCTGATTCCGGGTTTGATCAAACTCGCCCTCGAACGCGGTCTGAAGGCCGAGCTGACTGATCACCTCGGTTATGAG
AAGGGCGATCCGGCCGGTCGGGAACTGCCCAACGCCCGCAACGGGTCGAGCCCGAAAACGGTGCAGTCCGAGGCCGGGCCGGTCGAGCTGAACGTCCCTC
GAGACCGTGCCGGCACCTTCACCCCACGCCTGGTCCCGAAAGGCTCGCGCCGGCTCGGCGGCCTCGATGACATGATCATCTCGCTCTATGCCGGAGGCAT
GACGTTACGCGACATCCAGCATCACTTAGCCTCGACGATCGGCACAGATCTATCCCACGAGACGATCTCCAAGATCTGCGACGAGGTCCTCGACGCGGTC
GATGAATGGCAGAACCGGCCGCTGGAAGCCTTGTATCCCGTCATCTACCTCGACGCCCTGGTGGTAAAAGTCAAAGACGGCGCTCACGTCCGAAACAAGC
ACGCCCACATCGCTATTGGCGTCGACATGACCGGCGTCAAGCACGTCCTGGGTATTTGGATACAAGCCGAGGAAGGCGCGAAGTTCTGGGCCGGGGTGTG
TGCAAATCTGGCCAACCGCGGCGTACGTGACGTGCTCATCGTGTGCTGCGACGGGCTGACCGGATTCCCCGAGGCGATCGAGACGACCTGGCCACTGGCC
ACGGTGCAGACCTGCGTGGTGCATCTGATCCGCAACTCGATGCGGTTCGTGAACTACAAGGACCGCAAAGACGTGGCGCGGGCGATCAAACCGATATACA
CCGCCCCCGACGCCGAGACCGCCCGCCGCGAATGGGAGGCCTTCCGAGACTCCGAGTTAGGACTCAAATACCCGAGTGCGGCAGCAGCTTTCGATCGAGC
GTGGGACCGGTTCATTCCGTTCTTGGCGTTCCCGCCCGAGCTCCGCAAGGTCATCTACACCACCAACTCGATCGAGTCGCTGAACTATCAGCTCCGCAAG
GTCATCAAGAACCGGGGACACTTCCCCAACGACATCGCGGCGCGCAAACTGCTGTGGCTGGCGATCTGCGACATCGAGGACAAACGGGCCCGGCAACGCG
AGAAGGAACGCGGCAAGCCCGCCGCCACCCGCAAAGCCCCCGGACGACTCGTCGAGGGCCAGGTCGTGACGAACTGGAAACAGGCCCTCGGGCAACTCGC
CCTGGCCTACCCCGACCGCATCGAACCCCACCTCAACTAGACCCAACCAGCAACTACAGGAAACCCAGGAGTCACGGTCTTACACAGACATCTTGACAAG
CTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1386 bp | 461 aa | 55 | 1440 | + | No |
Description :
ORF sequence :
MSMALDDKQQSDDQQLSELAEPRSTAEVAEALQASGMVDELLAQIDTGQVQITGDGGLIPGLIKLALERGLKAELTDHLGYEKGDPAGRELPNARNGSSP
KTVQSEAGPVELNVPRDRAGTFTPRLVPKGSRRLGGLDDMIISLYAGGMTLRDIQHHLASTIGTDLSHETISKICDEVLDAVDEWQNRPLEALYPVIYLD
ALVVKVKDGAHVRNKHAHIAIGVDMTGVKHVLGIWIQAEEGAKFWAGVCANLANRGVRDVLIVCCDGLTGFPEAIETTWPLATVQTCVVHLIRNSMRFVN
YKDRKDVARAIKPIYTAPDAETARREWEAFRDSELGLKYPSAAAAFDRAWDRFIPFLAFPPELRKVIYTTNSIESLNYQLRKVIKNRGHFPNDIAARKLL
WLAICDIEDKRARQREKERGKPAATRKAPGRLVEGQVVTNWKQALGQLALAYPDRIEPHLN
KTVQSEAGPVELNVPRDRAGTFTPRLVPKGSRRLGGLDDMIISLYAGGMTLRDIQHHLASTIGTDLSHETISKICDEVLDAVDEWQNRPLEALYPVIYLD
ALVVKVKDGAHVRNKHAHIAIGVDMTGVKHVLGIWIQAEEGAKFWAGVCANLANRGVRDVLIVCCDGLTGFPEAIETTWPLATVQTCVVHLIRNSMRFVN
YKDRKDVARAIKPIYTAPDAETARREWEAFRDSELGLKYPSAAAAFDRAWDRFIPFLAFPPELRKVIYTTNSIESLNYQLRKVIKNRGHFPNDIAARKLL
WLAICDIEDKRARQREKERGKPAATRKAPGRLVEGQVVTNWKQALGQLALAYPDRIEPHLN
Blast result :
Comments
ISGte1 is 85% aa similar to ISMgi5.
References