ISSer2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009142 ND Saccharopolyspora erythraea
Saccharopolyspora erythraea NRRL 2338
DNA section
IS Length : 1473 bp

Ends


IR Length : 22/28

IRL : GGGCGTGTCAGGTGGGTTGTGTACAAGATCCGATAGTTGATGGAGTACGC
IRR : GAGCCTGTCAAGTGGTTTGTGTATAGGACTTTGGGTGGGTCAGTTGAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCGTGGGCCGTTCCACAGGC0
TCGCCTGGGGCAGTTGGGCG0
TTCCACAACGCCCACCGCGCCCGTTTCAT9
GGGCGCCTGGCGGTCGGCCTCGCCGCTT8
GGTTGGGCGCCAACGACTACTCGGTGCA8

DNA sequence

GGGCGTGTCAGGTGGGTTGTGTACAAGATCCGATAGTTGATGGAGTACGCACCGATGGGCACGCGTGATTCGCAGCAGCAGGAAGGACATCCGTTCGGGA
CGGCCGCACAGCCCTCGTCAGCACGGGACGCGGTCAATGAGATGATCGAGGCAGGCCTGCTCGATGGGCTGATGGACACCGTCGACCGGGGCGGGCTGGC
GTTGACCGGGCAGGGCGGGTTTTTGCCCGAGCTGGTCAAAGCCGTGCTCGAGCGTGGGCTGCAAACCGAAATGTCGGACCATCTCGGGTATGACAAGGGG
GATCCGGCCGGGCGGGGTAGTCCGAACTCGCGCAACGGTGCCAGCGGTAAGACGATCTCGACCGAGGTCGGCGATGTCGATCTGGAGGTGCCCCGCGACC
GGGCGGGCTCGTTCGAGCCGCGGCTGGTGCCCAAGGGGTCGCGGCGGGCCGGCGGCCTGGACGAGATCATCATCTCGCTGTACGCGGGCGGGATGACCGT
CCGCGACATCCAGCACCACCTGCAGCGCACCTATGGCACCGAGCTCTCCCACGAGACGATTTCCAAGATCACCGACGCGGTGCTCGAGGAGGTCACGGCC
TGGCAGTCGAGGCCGCTGGAAGAGATCTACCCGATCATCTACCTGGATGCGCTGGTGGTGAAGGTGCGTGACGGCCACCAGGTCCGCAACCGCTCTGCCC
ACATCGCCGTCGGTGTGGATCTCGACGGTGTCAAGCACGTCCTCGGGATCTGGATCCAGGCCTCCGAAGGGGCGAAGTTCTGGGCCGGGGTGTGTGCCGA
GCTGCGCAACCGCGGCGTCAAAGACGTCCTGATCGTCTGCTGCGACGGCCTGCCCGGGTTGCCGGAGGCGATCGAGGCGACCTGGCCGTCCTCGACGGTG
CAGACCTGCACGGTGCATCTGATCCGGGCGGCGATGCGGTTCGTCTCGTATCAGGACCGCAAGAAGGTCGCTGCGGCGTTGAAACCGATCTATACCGCGC
CCACCGTCCAGGCCGCCGAGACCGCCCTGCTGGAGTTCGCCGAGTCCGACCTCGGCCGCAAGTATCCGGCCGCCGTGCGGACCTGGGAAAACGCGTGGGA
ACGGTTCATCCCGTTCCTGTCGTTCCCACCCGAAGTCCGCAAGATCATCTACACCACGAACTCGATCGAGTCACTGAACTACCAACTCCGCAAGATCATC
AAAAACCGCGGGCACTTCCCCTCCGACGACGCGGTGATCAAGCTGTTGTGGCTGGCCATCCGCGACATCGAAGACAAACGCGCCCGACAACGCGACAAAC
AACGCGGACTACCCACCCACCAGCGCAGCGCCCCCGCACGTCTGGTCGAAGGCGCCACCGTCCACGGCTGGAAACAAGCCCTCGGCGCCCTCGCACTGCA
CTTCCCCGACCGACTCGACCCCTACCTCAACTGACCCACCCAAAGTCCTATACACAAACCACTTGACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1380 bp459 aa551434+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGTRDSQQQEGHPFGTAAQPSSARDAVNEMIEAGLLDGLMDTVDRGGLALTGQGGFLPELVKAVLERGLQTEMSDHLGYDKGDPAGRGSPNSRNGASGKT
ISTEVGDVDLEVPRDRAGSFEPRLVPKGSRRAGGLDEIIISLYAGGMTVRDIQHHLQRTYGTELSHETISKITDAVLEEVTAWQSRPLEEIYPIIYLDAL
VVKVRDGHQVRNRSAHIAVGVDLDGVKHVLGIWIQASEGAKFWAGVCAELRNRGVKDVLIVCCDGLPGLPEAIEATWPSSTVQTCTVHLIRAAMRFVSYQ
DRKKVAAALKPIYTAPTVQAAETALLEFAESDLGRKYPAAVRTWENAWERFIPFLSFPPEVRKIIYTTNSIESLNYQLRKIIKNRGHFPSDDAVIKLLWL
AIRDIEDKRARQRDKQRGLPTHQRSAPARLVEGATVHGWKQALGALALHFPDRLDPYLN

 

Blast result :
Comments
ISSer2 is 79% aa similar to ISAar6.
References