ISRle12
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JH719381.1 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum bv trifolii WSM597 |
DNA section
IS Length : 1297 bp
Ends
IR Length : 30
IRL : GGGACTGTCAGGAATTCTGTGCGTGAGGCCATGATGATGGAAAGGAGAGA
IRR : GGGACTGTCAGGAATTCTGTGCGTGAGGCCGGTTCGTCATTGATTGAAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAGGAACGG | TGTTTCACA | TCTCTCCCCG | 9 |
DNA sequence
GGGACTGTCAGGAATTCTGTGCGTGAGGCCATGATGATGGAAAGGAGAGAATCATCACATGGCTATCGACAAGGAACTTCTGGACCAGCTTTTGGCTGGG
CGCGATCCGTCTGAGGTGTTCAGCAAGGATGGCTTGCTCGACGATCTGAGGAAGGCGCTTTCGGAGCGCATTCTCCATGCCGAGTTGGACGAGCATCTCG
ATGACGAACAGGCGGAGGGCAATGCCAATCGCCGCAACGGTTCTTCGAAGAAGACGGTGCTGACAGGTACGTCAAAGATGACGCTGTCGATCCCGCGCGA
CCGGGCCGGGACCTTCGATCCGAAGCTGATTGCGAAATACCAGCGTCGCTTCCCGGACTTTGATCACAAGATCATCTCGATGTATGCGCGCGGCATGACG
GTGCGCGAGATCCAGGGTCATATCGAAGAAATCTATGGCATCGAGGTGTCGCCGGATCTGGTCTCCGCGGTCACCAATGCTGTTCTCGAGGAAGTTGGGG
AATGGCAGAGCCGGCCGCTCGAGCTTTGCTATCCGCTCGTGTTCTTCGATGCAATCCGGGTCAAGATCAGGGATGAGGGCTTCGTCCGCAACAAGGCCGT
CTATATCGCGCTTGCCGTTCTGGCGGACGGCACCAAGGAAATCCTCGGCCTGTGGATCGAGCAGACGGAAGGCGCGAAGTTCTGGCTGCGGGTGATGAAC
GAGCTGAAGAACCGGGGCTGCCAGGATATCCTGATTGCCGTCGTCGACGGGCTGAAAGGCTTTCCAGAGGCGATCACTGCTGCTTTCCCGCAGACGATCG
TCCAGACCTGCATCGTGCATCTCATCCGCCATTCGCTCGAATTCGTGTCCTGGAAAGATCGAAAGCCGGTCGTCCCGGCGCTACGGGCAATCTACCGCGC
CAAGGACGCAGAGGCCGGAATGAAGGCGCTGGAGGCGTTCGAAACCGGATACTGGGGTCAAAAATATCCTGCCATCGCTCAGAGCTGGCGGCGCAATTGG
GAACACGTCATTCCCTTCTTCGCCTTTCCCGAAGGCGTGCGTCGAATCATCTACACGACCAACGCCATCGAAGCGCTGAACTCTAAACTCCGGCGGGCCG
TCCGCTCGCGTGGCCATTTCCCCAGTGACGATGCCGCCATGAAGCTGTTATACTTAGTTTTGAACCATGCGGCCGAAGACTGGAAACGTCCGCCCCGCGA
ATGGTTCGAGGCCAAAACCCAATTCGCCGTCGTCTTCGGCGAACGGTTCTTCAATCAATGACGAACCGGCCTCACGCACAGAATTCCTGACAGTCCC
CGCGATCCGTCTGAGGTGTTCAGCAAGGATGGCTTGCTCGACGATCTGAGGAAGGCGCTTTCGGAGCGCATTCTCCATGCCGAGTTGGACGAGCATCTCG
ATGACGAACAGGCGGAGGGCAATGCCAATCGCCGCAACGGTTCTTCGAAGAAGACGGTGCTGACAGGTACGTCAAAGATGACGCTGTCGATCCCGCGCGA
CCGGGCCGGGACCTTCGATCCGAAGCTGATTGCGAAATACCAGCGTCGCTTCCCGGACTTTGATCACAAGATCATCTCGATGTATGCGCGCGGCATGACG
GTGCGCGAGATCCAGGGTCATATCGAAGAAATCTATGGCATCGAGGTGTCGCCGGATCTGGTCTCCGCGGTCACCAATGCTGTTCTCGAGGAAGTTGGGG
AATGGCAGAGCCGGCCGCTCGAGCTTTGCTATCCGCTCGTGTTCTTCGATGCAATCCGGGTCAAGATCAGGGATGAGGGCTTCGTCCGCAACAAGGCCGT
CTATATCGCGCTTGCCGTTCTGGCGGACGGCACCAAGGAAATCCTCGGCCTGTGGATCGAGCAGACGGAAGGCGCGAAGTTCTGGCTGCGGGTGATGAAC
GAGCTGAAGAACCGGGGCTGCCAGGATATCCTGATTGCCGTCGTCGACGGGCTGAAAGGCTTTCCAGAGGCGATCACTGCTGCTTTCCCGCAGACGATCG
TCCAGACCTGCATCGTGCATCTCATCCGCCATTCGCTCGAATTCGTGTCCTGGAAAGATCGAAAGCCGGTCGTCCCGGCGCTACGGGCAATCTACCGCGC
CAAGGACGCAGAGGCCGGAATGAAGGCGCTGGAGGCGTTCGAAACCGGATACTGGGGTCAAAAATATCCTGCCATCGCTCAGAGCTGGCGGCGCAATTGG
GAACACGTCATTCCCTTCTTCGCCTTTCCCGAAGGCGTGCGTCGAATCATCTACACGACCAACGCCATCGAAGCGCTGAACTCTAAACTCCGGCGGGCCG
TCCGCTCGCGTGGCCATTTCCCCAGTGACGATGCCGCCATGAAGCTGTTATACTTAGTTTTGAACCATGCGGCCGAAGACTGGAAACGTCCGCCCCGCGA
ATGGTTCGAGGCCAAAACCCAATTCGCCGTCGTCTTCGGCGAACGGTTCTTCAATCAATGACGAACCGGCCTCACGCACAGAATTCCTGACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 59 | 1261 | + | No |
Chemistry : DDE
ORF sequence :
MAIDKELLDQLLAGRDPSEVFSKDGLLDDLRKALSERILHAELDEHLDDEQAEGNANRRNGSSKKTVLTGTSKMTLSIPRDRAGTFDPKLIAKYQRRFPD
FDHKIISMYARGMTVREIQGHIEEIYGIEVSPDLVSAVTNAVLEEVGEWQSRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYIALAVLADGTKEILGLWI
EQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAAFPQTIVQTCIVHLIRHSLEFVSWKDRKPVVPALRAIYRAKDAEAGMKALEAFETGYWG
QKYPAIAQSWRRNWEHVIPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPSDDAAMKLLYLVLNHAAEDWKRPPREWFEAKTQFAVVFGERFFNQ
FDHKIISMYARGMTVREIQGHIEEIYGIEVSPDLVSAVTNAVLEEVGEWQSRPLELCYPLVFFDAIRVKIRDEGFVRNKAVYIALAVLADGTKEILGLWI
EQTEGAKFWLRVMNELKNRGCQDILIAVVDGLKGFPEAITAAFPQTIVQTCIVHLIRHSLEFVSWKDRKPVVPALRAIYRAKDAEAGMKALEAFETGYWG
QKYPAIAQSWRRNWEHVIPFFAFPEGVRRIIYTTNAIEALNSKLRRAVRSRGHFPSDDAAMKLLYLVLNHAAEDWKRPPREWFEAKTQFAVVFGERFFNQ
Blast result :
Comments
ISRle12 is 96% aa similar to ISNGR8.
References