ISWch2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014225 | ND | Waddlia chondrophila | Waddlia chondrophila WSU 86-1044 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 22/25
IRL : GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAA
IRR : GAGATATTTTCAAATGTTGTGTTTGGAATCCTTAAGCGCACCCTGTTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGGCATCTGTAATACAAAG | ACATCATTGCGTCAAAGTAGAT | 0 |
DNA sequence
GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAAATTTTGAAACAAAAAATAAATTTTATAGGAGATACGCTCATGAAAGATGA
TGTCATTTTTTTGGATAAATTTCACGCAACAAGTGAAATGAAGAGTTTTCTGGAACAAACTTTGAGGGAGGGAGCTCGCTTTCTGCTTCAACAGGCTGTT
GAAAATGAAGTCAATGAATACCTTGAATCGATGAGTAGCAGAACGAACTCCGAAGGAAGAAAACAATTTGTGCGCAACGGTTACCTGCCTGAAAGAGAAG
TGCAAACAGGAATTGGGCCAATAGCTGTGAAACAACCTCGAGTACGCGATAAGAACGGCTTTACAAAGTACTCAAGCGCAATTCTTCCAAAATATTTGAG
GAGAACGCCGTCTCTAGAGGCAGTGATTCCAGCTCTTTATCTCAGAGGAATATCTACGAATAATTTCCAGGAGGCTCTTGAAGCGATAATGGGCAAGGAT
GCGAAAGGATTATCCGCAGCTAACATCACTCGTTTAAAACAATCTTGGGAGCAGGAATACAAAGACTGGAACAAGCGCTCTCTTGAAGGAAAGCACTACG
CTTACATCTGGGTAGATGGGATCTATTTCAATGTTCGTCTTGAAGATGACCGCATCTGTTTTCTTGTCATTCTCGGCGCTTTGCCCAATGGAAAAAAAGA
GCTTATAGCGATCCACAATGGTTATAGAGAGAGCAAGATTTCCTGGACGGAGGTTTTAGAAAATTTAAAGCGGCGCGGGTTATGCACTCCACCTGAGCTT
GCTATAGGAGACGGGGCGCTTGGATTTTGGTCTGCGATAGAAGAAGTATTCCCGAAGACAAAGCAGCAGCGGTGTTGGGTGCATAAGACGGCCAATGTGC
TTGATAAGATGCCTAAAAGCGTGCAGGTAAATGCGAAAAAGGCCATCCATGAAATCTATCTGGCTCCAACCAAAGAAGATGGGTTGGCTGCATTTGAAAC
ATTTTTAAAAACATATCGAGACAAATACCCCAAAGCCTGCGCTTGTCTTGAAAAAGATAAGGCGCAGCTGTTTACCTTCTACAACTTCCCTGCAATCCAT
TGGCAGCACATCAGGACAACCAATCCAATCGAGTCCACTTTTGCAACAATTAGGCATCGGACAAGGCAGACCAAGGGTTGTGGTTCAGTTACTGCCACAT
TGACCATGGTATTCAAACTAGCCACATCAGCTGAAAAGAAATGGAGAAAGCTTAAGGGCTGTGAAATGATTGAAAAAGTGATCAGGGGAGTGATTTTTAA
AAATGGTGAAGAGGTAATGGATAAAGAAAAAATAGCTTAGAAAAATTTTTAAAACAGGGTGCGCTTAAGGATTCCAAACACAACATTTGAAAATATCTC
TGTCATTTTTTTGGATAAATTTCACGCAACAAGTGAAATGAAGAGTTTTCTGGAACAAACTTTGAGGGAGGGAGCTCGCTTTCTGCTTCAACAGGCTGTT
GAAAATGAAGTCAATGAATACCTTGAATCGATGAGTAGCAGAACGAACTCCGAAGGAAGAAAACAATTTGTGCGCAACGGTTACCTGCCTGAAAGAGAAG
TGCAAACAGGAATTGGGCCAATAGCTGTGAAACAACCTCGAGTACGCGATAAGAACGGCTTTACAAAGTACTCAAGCGCAATTCTTCCAAAATATTTGAG
GAGAACGCCGTCTCTAGAGGCAGTGATTCCAGCTCTTTATCTCAGAGGAATATCTACGAATAATTTCCAGGAGGCTCTTGAAGCGATAATGGGCAAGGAT
GCGAAAGGATTATCCGCAGCTAACATCACTCGTTTAAAACAATCTTGGGAGCAGGAATACAAAGACTGGAACAAGCGCTCTCTTGAAGGAAAGCACTACG
CTTACATCTGGGTAGATGGGATCTATTTCAATGTTCGTCTTGAAGATGACCGCATCTGTTTTCTTGTCATTCTCGGCGCTTTGCCCAATGGAAAAAAAGA
GCTTATAGCGATCCACAATGGTTATAGAGAGAGCAAGATTTCCTGGACGGAGGTTTTAGAAAATTTAAAGCGGCGCGGGTTATGCACTCCACCTGAGCTT
GCTATAGGAGACGGGGCGCTTGGATTTTGGTCTGCGATAGAAGAAGTATTCCCGAAGACAAAGCAGCAGCGGTGTTGGGTGCATAAGACGGCCAATGTGC
TTGATAAGATGCCTAAAAGCGTGCAGGTAAATGCGAAAAAGGCCATCCATGAAATCTATCTGGCTCCAACCAAAGAAGATGGGTTGGCTGCATTTGAAAC
ATTTTTAAAAACATATCGAGACAAATACCCCAAAGCCTGCGCTTGTCTTGAAAAAGATAAGGCGCAGCTGTTTACCTTCTACAACTTCCCTGCAATCCAT
TGGCAGCACATCAGGACAACCAATCCAATCGAGTCCACTTTTGCAACAATTAGGCATCGGACAAGGCAGACCAAGGGTTGTGGTTCAGTTACTGCCACAT
TGACCATGGTATTCAAACTAGCCACATCAGCTGAAAAGAAATGGAGAAAGCTTAAGGGCTGTGAAATGATTGAAAAAGTGATCAGGGGAGTGATTTTTAA
AAATGGTGAAGAGGTAATGGATAAAGAAAAAATAGCTTAGAAAAATTTTTAAAACAGGGTGCGCTTAAGGATTCCAAACACAACATTTGAAAATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 90 | 1340 | + | No |
Chemistry : DDE
ORF sequence :
MKDDVIFLDKFHATSEMKSFLEQTLREGARFLLQQAVENEVNEYLESMSSRTNSEGRKQFVRNGYLPEREVQTGIGPIAVKQPRVRDKNGFTKYSSAILP
KYLRRTPSLEAVIPALYLRGISTNNFQEALEAIMGKDAKGLSAANITRLKQSWEQEYKDWNKRSLEGKHYAYIWVDGIYFNVRLEDDRICFLVILGALPN
GKKELIAIHNGYRESKISWTEVLENLKRRGLCTPPELAIGDGALGFWSAIEEVFPKTKQQRCWVHKTANVLDKMPKSVQVNAKKAIHEIYLAPTKEDGLA
AFETFLKTYRDKYPKACACLEKDKAQLFTFYNFPAIHWQHIRTTNPIESTFATIRHRTRQTKGCGSVTATLTMVFKLATSAEKKWRKLKGCEMIEKVIRG
VIFKNGEEVMDKEKIA
KYLRRTPSLEAVIPALYLRGISTNNFQEALEAIMGKDAKGLSAANITRLKQSWEQEYKDWNKRSLEGKHYAYIWVDGIYFNVRLEDDRICFLVILGALPN
GKKELIAIHNGYRESKISWTEVLENLKRRGLCTPPELAIGDGALGFWSAIEEVFPKTKQQRCWVHKTANVLDKMPKSVQVNAKKAIHEIYLAPTKEDGLA
AFETFLKTYRDKYPKACACLEKDKAQLFTFYNFPAIHWQHIRTTNPIESTFATIRHRTRQTKGCGSVTATLTMVFKLATSAEKKWRKLKGCEMIEKVIRG
VIFKNGEEVMDKEKIA
Blast result :
Comments
ISWch2 is 96% aa similar to ISWch1.
References