ISWch2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014225 ND Waddlia chondrophila
Waddlia chondrophila WSU 86-1044
DNA section
IS Length : 1399 bp

Ends


IR Length : 22/25

IRL : GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAA
IRR : GAGATATTTTCAAATGTTGTGTTTGGAATCCTTAAGCGCACCCTGTTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
CAGGCATCTGTAATACAAAGACATCATTGCGTCAAAGTAGAT0

DNA sequence

GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAAATTTTGAAACAAAAAATAAATTTTATAGGAGATACGCTCATGAAAGATGA
TGTCATTTTTTTGGATAAATTTCACGCAACAAGTGAAATGAAGAGTTTTCTGGAACAAACTTTGAGGGAGGGAGCTCGCTTTCTGCTTCAACAGGCTGTT
GAAAATGAAGTCAATGAATACCTTGAATCGATGAGTAGCAGAACGAACTCCGAAGGAAGAAAACAATTTGTGCGCAACGGTTACCTGCCTGAAAGAGAAG
TGCAAACAGGAATTGGGCCAATAGCTGTGAAACAACCTCGAGTACGCGATAAGAACGGCTTTACAAAGTACTCAAGCGCAATTCTTCCAAAATATTTGAG
GAGAACGCCGTCTCTAGAGGCAGTGATTCCAGCTCTTTATCTCAGAGGAATATCTACGAATAATTTCCAGGAGGCTCTTGAAGCGATAATGGGCAAGGAT
GCGAAAGGATTATCCGCAGCTAACATCACTCGTTTAAAACAATCTTGGGAGCAGGAATACAAAGACTGGAACAAGCGCTCTCTTGAAGGAAAGCACTACG
CTTACATCTGGGTAGATGGGATCTATTTCAATGTTCGTCTTGAAGATGACCGCATCTGTTTTCTTGTCATTCTCGGCGCTTTGCCCAATGGAAAAAAAGA
GCTTATAGCGATCCACAATGGTTATAGAGAGAGCAAGATTTCCTGGACGGAGGTTTTAGAAAATTTAAAGCGGCGCGGGTTATGCACTCCACCTGAGCTT
GCTATAGGAGACGGGGCGCTTGGATTTTGGTCTGCGATAGAAGAAGTATTCCCGAAGACAAAGCAGCAGCGGTGTTGGGTGCATAAGACGGCCAATGTGC
TTGATAAGATGCCTAAAAGCGTGCAGGTAAATGCGAAAAAGGCCATCCATGAAATCTATCTGGCTCCAACCAAAGAAGATGGGTTGGCTGCATTTGAAAC
ATTTTTAAAAACATATCGAGACAAATACCCCAAAGCCTGCGCTTGTCTTGAAAAAGATAAGGCGCAGCTGTTTACCTTCTACAACTTCCCTGCAATCCAT
TGGCAGCACATCAGGACAACCAATCCAATCGAGTCCACTTTTGCAACAATTAGGCATCGGACAAGGCAGACCAAGGGTTGTGGTTCAGTTACTGCCACAT
TGACCATGGTATTCAAACTAGCCACATCAGCTGAAAAGAAATGGAGAAAGCTTAAGGGCTGTGAAATGATTGAAAAAGTGATCAGGGGAGTGATTTTTAA
AAATGGTGAAGAGGTAATGGATAAAGAAAAAATAGCTTAGAAAAATTTTTAAAACAGGGTGCGCTTAAGGATTCCAAACACAACATTTGAAAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa901340+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKDDVIFLDKFHATSEMKSFLEQTLREGARFLLQQAVENEVNEYLESMSSRTNSEGRKQFVRNGYLPEREVQTGIGPIAVKQPRVRDKNGFTKYSSAILP
KYLRRTPSLEAVIPALYLRGISTNNFQEALEAIMGKDAKGLSAANITRLKQSWEQEYKDWNKRSLEGKHYAYIWVDGIYFNVRLEDDRICFLVILGALPN
GKKELIAIHNGYRESKISWTEVLENLKRRGLCTPPELAIGDGALGFWSAIEEVFPKTKQQRCWVHKTANVLDKMPKSVQVNAKKAIHEIYLAPTKEDGLA
AFETFLKTYRDKYPKACACLEKDKAQLFTFYNFPAIHWQHIRTTNPIESTFATIRHRTRQTKGCGSVTATLTMVFKLATSAEKKWRKLKGCEMIEKVIRG
VIFKNGEEVMDKEKIA

 

Blast result :
Comments
ISWch2 is 96% aa similar to ISWch1.
References