ISGpo1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_016906.1 | ND | Gordonia polyisoprenivorans | Gordonia polyisoprenivorans VH2
Gordonia polyisoprenivorans VH2 plasmid p174 |
DNA section
IS Length : 1432 bp
Ends
IR Length : 20/24
IRL : GAGGAATGATCAAGACCTGTGGATCTGGGAGGGAGTGCCTTCCCGCATGA
IRR : GAGATATTGTCAAGACCTGTGGATGAGGTGGTTTCAGGCGGCCTCCCCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTCTCCTGG | CTCCCCGGG | CCGGTCAGTA | 9 |
GATGGGAACG | ATCGGCTGG | GATGGATGCG | 9 |
ACGGGCCAGC | AAGCTTCG | TGAAGTCCCC | 8 |
DNA sequence
GAGGAATGATCAAGACCTGTGGATCTGGGAGGGAGTGCCTTCCCGCATGATGATCTCAGTCAGTTCAGGTTCTTGATCAAGTCAGCGTTGGCGCGCTGGC
GGGAAGGCACTCCTGGTGCTCAACGTAGTCAACACCAACGAAGGTTCCAACTCCGACGGCGATGCGGGTCGTCCGCTGCTCGATGAGATTGTGCGTGACG
GCGCCCGGCAGATGCTCGCTGCCGCTCTGCGCGCCGAGGTCGCTGCCTACATCGACGGGTTCGCCGACCAGGTCGATGAGAACGGGCACCGCCTCGTGGT
GCGCAACGGATACCACCATGAGCGTGAGGTGGTGACCGCGGCTGGCGCGGTCATGGTGAGAGCGCCACGCGTGAACGACAAACGTGTCGATGCTGATACG
GGTGAACGACAACGCTTTTCGTCGAAGATTCTGCCGGCGTGGGCACGCAAGAGTCCGGAGGTGTCCGCGGTGCTGCCGCTGCTGTATCTGCATGGGCTGT
CCACCGGCGATTTCGGGCCCGCCCTGGAACAGTTCCTCGGTTCGGGTGCCGGTTTGTCAGCGGCCACGATCACCCGGCTGACCGCCCAGTGGCAGAAGGA
AGCTGCCGCGTTCGCCGACCGGGCTATCACCGCTGACTATGTGTACATGTGGGTCGACGGTATCCACCTCAAAGTCCGTCTCGAGCAGGAGAAACTGTGT
CTGCTGGTGATGATCGGGGTGCGTGCCGACGGCAAGAAGGAACTGATCGCGCTGAGCGACGGCTACCGCGAATCGGCCGAGTCGTGGGCGGATTTGCTGC
GCTCATGCAAGCGGCGAGGAATGAGGGCGCCGACGTTGGCCGTTGGCGATGGCGCTCTCGGGTTCTGGGCGGCGGTCCGGGAGGTGTTCCCCGAGGCCCG
TGAGCAACGGTGCTGGTTTCACAAGCAAGCCAATGTGCTTGCCGCGCTACCGAAATCAGCGCATCCGAACGCGATCAAAGCGATGCAGGAGATCTACAAC
GCCGAAGACGACGCCCATGCCCGCGCCGCAGCGCAAGAGTTCGAGAAGGCGTACGGAGCGAAGTACCCGAAAGCGGTTGCCAAGATCATCGATGACCTCG
ACGTGTTGCTGGAGTTCTACCGGTATCCGGCCGAGCACTGGCAGCATCTGCGGACCACCAACCCGATCGAGTCCACCTTCGCGACCGTCCGGTTGCGCAC
GAAAGTCACCAAAGGCCCCGGATCACGCGCCGCTGGTCTCGCGATGGCTTACAAGCTGATCGAAGCCGCACAATCGAAATGGCGGGCGGTCAACGCACCC
CACCTGGTCAAGCTGGTCCGTGATGGCGCCACCTTCGACAAGGGCAAACTCGTCGAACCCGACACCACCTCAGCCGACCACCATGGGGAGGCCGCCTGAA
ACCACCTCATCCACAGGTCTTGACAATATCTC
GGGAAGGCACTCCTGGTGCTCAACGTAGTCAACACCAACGAAGGTTCCAACTCCGACGGCGATGCGGGTCGTCCGCTGCTCGATGAGATTGTGCGTGACG
GCGCCCGGCAGATGCTCGCTGCCGCTCTGCGCGCCGAGGTCGCTGCCTACATCGACGGGTTCGCCGACCAGGTCGATGAGAACGGGCACCGCCTCGTGGT
GCGCAACGGATACCACCATGAGCGTGAGGTGGTGACCGCGGCTGGCGCGGTCATGGTGAGAGCGCCACGCGTGAACGACAAACGTGTCGATGCTGATACG
GGTGAACGACAACGCTTTTCGTCGAAGATTCTGCCGGCGTGGGCACGCAAGAGTCCGGAGGTGTCCGCGGTGCTGCCGCTGCTGTATCTGCATGGGCTGT
CCACCGGCGATTTCGGGCCCGCCCTGGAACAGTTCCTCGGTTCGGGTGCCGGTTTGTCAGCGGCCACGATCACCCGGCTGACCGCCCAGTGGCAGAAGGA
AGCTGCCGCGTTCGCCGACCGGGCTATCACCGCTGACTATGTGTACATGTGGGTCGACGGTATCCACCTCAAAGTCCGTCTCGAGCAGGAGAAACTGTGT
CTGCTGGTGATGATCGGGGTGCGTGCCGACGGCAAGAAGGAACTGATCGCGCTGAGCGACGGCTACCGCGAATCGGCCGAGTCGTGGGCGGATTTGCTGC
GCTCATGCAAGCGGCGAGGAATGAGGGCGCCGACGTTGGCCGTTGGCGATGGCGCTCTCGGGTTCTGGGCGGCGGTCCGGGAGGTGTTCCCCGAGGCCCG
TGAGCAACGGTGCTGGTTTCACAAGCAAGCCAATGTGCTTGCCGCGCTACCGAAATCAGCGCATCCGAACGCGATCAAAGCGATGCAGGAGATCTACAAC
GCCGAAGACGACGCCCATGCCCGCGCCGCAGCGCAAGAGTTCGAGAAGGCGTACGGAGCGAAGTACCCGAAAGCGGTTGCCAAGATCATCGATGACCTCG
ACGTGTTGCTGGAGTTCTACCGGTATCCGGCCGAGCACTGGCAGCATCTGCGGACCACCAACCCGATCGAGTCCACCTTCGCGACCGTCCGGTTGCGCAC
GAAAGTCACCAAAGGCCCCGGATCACGCGCCGCTGGTCTCGCGATGGCTTACAAGCTGATCGAAGCCGCACAATCGAAATGGCGGGCGGTCAACGCACCC
CACCTGGTCAAGCTGGTCCGTGATGGCGCCACCTTCGACAAGGGCAAACTCGTCGAACCCGACACCACCTCAGCCGACCACCATGGGGAGGCCGCCTGAA
ACCACCTCATCCACAGGTCTTGACAATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1284 bp | 427 aa | 116 | 1399 | + | No |
Description :
ORF sequence :
MLNVVNTNEGSNSDGDAGRPLLDEIVRDGARQMLAAALRAEVAAYIDGFADQVDENGHRLVVRNGYHHEREVVTAAGAVMVRAPRVNDKRVDADTGERQR
FSSKILPAWARKSPEVSAVLPLLYLHGLSTGDFGPALEQFLGSGAGLSAATITRLTAQWQKEAAAFADRAITADYVYMWVDGIHLKVRLEQEKLCLLVMI
GVRADGKKELIALSDGYRESAESWADLLRSCKRRGMRAPTLAVGDGALGFWAAVREVFPEAREQRCWFHKQANVLAALPKSAHPNAIKAMQEIYNAEDDA
HARAAAQEFEKAYGAKYPKAVAKIIDDLDVLLEFYRYPAEHWQHLRTTNPIESTFATVRLRTKVTKGPGSRAAGLAMAYKLIEAAQSKWRAVNAPHLVKL
VRDGATFDKGKLVEPDTTSADHHGEAA
FSSKILPAWARKSPEVSAVLPLLYLHGLSTGDFGPALEQFLGSGAGLSAATITRLTAQWQKEAAAFADRAITADYVYMWVDGIHLKVRLEQEKLCLLVMI
GVRADGKKELIALSDGYRESAESWADLLRSCKRRGMRAPTLAVGDGALGFWAAVREVFPEAREQRCWFHKQANVLAALPKSAHPNAIKAMQEIYNAEDDA
HARAAAQEFEKAYGAKYPKAVAKIIDDLDVLLEFYRYPAEHWQHLRTTNPIESTFATVRLRTKVTKGPGSRAAGLAMAYKLIEAAQSKWRAVNAPHLVKL
VRDGATFDKGKLVEPDTTSADHHGEAA
Blast result :
Comments
ISGpo1 is 87% aa similar to IS666.
References