ISGpo1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_016906.1 ND Gordonia polyisoprenivorans
Gordonia polyisoprenivorans VH2
Gordonia polyisoprenivorans VH2 plasmid p174
DNA section
IS Length : 1432 bp

Ends


IR Length : 20/24

IRL : GAGGAATGATCAAGACCTGTGGATCTGGGAGGGAGTGCCTTCCCGCATGA
IRR : GAGATATTGTCAAGACCTGTGGATGAGGTGGTTTCAGGCGGCCTCCCCAT

Insertion site


Left flankDirect repeatRight flankDR Length
GTTCTCCTGGCTCCCCGGGCCGGTCAGTA9
GATGGGAACGATCGGCTGGGATGGATGCG9
ACGGGCCAGCAAGCTTCGTGAAGTCCCC8

DNA sequence

GAGGAATGATCAAGACCTGTGGATCTGGGAGGGAGTGCCTTCCCGCATGATGATCTCAGTCAGTTCAGGTTCTTGATCAAGTCAGCGTTGGCGCGCTGGC
GGGAAGGCACTCCTGGTGCTCAACGTAGTCAACACCAACGAAGGTTCCAACTCCGACGGCGATGCGGGTCGTCCGCTGCTCGATGAGATTGTGCGTGACG
GCGCCCGGCAGATGCTCGCTGCCGCTCTGCGCGCCGAGGTCGCTGCCTACATCGACGGGTTCGCCGACCAGGTCGATGAGAACGGGCACCGCCTCGTGGT
GCGCAACGGATACCACCATGAGCGTGAGGTGGTGACCGCGGCTGGCGCGGTCATGGTGAGAGCGCCACGCGTGAACGACAAACGTGTCGATGCTGATACG
GGTGAACGACAACGCTTTTCGTCGAAGATTCTGCCGGCGTGGGCACGCAAGAGTCCGGAGGTGTCCGCGGTGCTGCCGCTGCTGTATCTGCATGGGCTGT
CCACCGGCGATTTCGGGCCCGCCCTGGAACAGTTCCTCGGTTCGGGTGCCGGTTTGTCAGCGGCCACGATCACCCGGCTGACCGCCCAGTGGCAGAAGGA
AGCTGCCGCGTTCGCCGACCGGGCTATCACCGCTGACTATGTGTACATGTGGGTCGACGGTATCCACCTCAAAGTCCGTCTCGAGCAGGAGAAACTGTGT
CTGCTGGTGATGATCGGGGTGCGTGCCGACGGCAAGAAGGAACTGATCGCGCTGAGCGACGGCTACCGCGAATCGGCCGAGTCGTGGGCGGATTTGCTGC
GCTCATGCAAGCGGCGAGGAATGAGGGCGCCGACGTTGGCCGTTGGCGATGGCGCTCTCGGGTTCTGGGCGGCGGTCCGGGAGGTGTTCCCCGAGGCCCG
TGAGCAACGGTGCTGGTTTCACAAGCAAGCCAATGTGCTTGCCGCGCTACCGAAATCAGCGCATCCGAACGCGATCAAAGCGATGCAGGAGATCTACAAC
GCCGAAGACGACGCCCATGCCCGCGCCGCAGCGCAAGAGTTCGAGAAGGCGTACGGAGCGAAGTACCCGAAAGCGGTTGCCAAGATCATCGATGACCTCG
ACGTGTTGCTGGAGTTCTACCGGTATCCGGCCGAGCACTGGCAGCATCTGCGGACCACCAACCCGATCGAGTCCACCTTCGCGACCGTCCGGTTGCGCAC
GAAAGTCACCAAAGGCCCCGGATCACGCGCCGCTGGTCTCGCGATGGCTTACAAGCTGATCGAAGCCGCACAATCGAAATGGCGGGCGGTCAACGCACCC
CACCTGGTCAAGCTGGTCCGTGATGGCGCCACCTTCGACAAGGGCAAACTCGTCGAACCCGACACCACCTCAGCCGACCACCATGGGGAGGCCGCCTGAA
ACCACCTCATCCACAGGTCTTGACAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1284 bp427 aa1161399+No
ORF function : Transposase
Description :

ORF sequence :

MLNVVNTNEGSNSDGDAGRPLLDEIVRDGARQMLAAALRAEVAAYIDGFADQVDENGHRLVVRNGYHHEREVVTAAGAVMVRAPRVNDKRVDADTGERQR
FSSKILPAWARKSPEVSAVLPLLYLHGLSTGDFGPALEQFLGSGAGLSAATITRLTAQWQKEAAAFADRAITADYVYMWVDGIHLKVRLEQEKLCLLVMI
GVRADGKKELIALSDGYRESAESWADLLRSCKRRGMRAPTLAVGDGALGFWAAVREVFPEAREQRCWFHKQANVLAALPKSAHPNAIKAMQEIYNAEDDA
HARAAAQEFEKAYGAKYPKAVAKIIDDLDVLLEFYRYPAEHWQHLRTTNPIESTFATVRLRTKVTKGPGSRAAGLAMAYKLIEAAQSKWRAVNAPHLVKL
VRDGATFDKGKLVEPDTTSADHHGEAA

 

Blast result :
Comments
ISGpo1 is 87% aa similar to IS666.
References