ISRjo4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008269 | ND | Rhodococcus jostii | Rhodococcus jostii RHA1 plasmid pRHL1 |
DNA section
IS Length : 1458 bp
Ends
IR Length : 18/24
IRL : GAGGAATGCTCAGAACCTGTGGATCCCGGGAGGGCGTACCTTCCCGGAAG
IRR : GAGATATTGTCAATACCTGTGGATGAGGGAGTTTCAGGCAACCTCCGCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTCGAGTCG | ACGGCAAAT | CGCGGATACT | 9 |
CTATATCTGG | CCGCAGTGC | GGATGAACTT | 9 |
DNA sequence
GAGGAATGCTCAGAACCTGTGGATCCCGGGAGGGCGTACCTTCCCGGAAGATGATCTACGAAGTTCACAGGAATCTGATCAAGACCAGCGCGCCAACGCT
GGCGGGAAGGTACGCCCGTGCTCACGGTAGTACACGACGACGACCGCTCCAACGACGACGTCGGGCGGTCGATGCTCGACGAGATCGTCCGCGATGGTGC
GCGGCAGATGCTGGCGGCCGCGCTGCAGGCGGAGGTGGCCGCCTATATCGAGCAGTTCGCTGATCAGGTCGACGAGAACGGTCGCCGCCTGGTGGTCCGC
AACGGCTACCATCACGAACGCGATGTGCTGACCGCCGCGGGCGCGGTCACCGTGAAGGTTCCCAGAGTGAACGATAAGCGCGTCGACCCGGACACCGGCG
AGCGACAGCGGTTTTCGTCCGCGATCCTGCCGGCCTGGGTACGTAAGTCCCCGCAGATGAACGAGGTGCTGCCGCTGCTGTACCTGCACGGGCTCTCCAC
CAGCGACTTCGGGCCGGCGCTCGAGCAGTTCCTCGGATCCGGTGCCGGACTGTCGGCGGCCTCGATCACCCGGTTGACATCCCAGTGGCAGGACGAGGCC
AAGGCCTTCCAGGATCGGGACCTCTCGGGCACCGACTTCGTCTATCTGTGGGTCGACGGCATCCACCTCAAGGTGAGGCTTGAGCAGGAAAAACTGTGCC
TGCTGGTGATGATCGGTGTCCGTGCGGACGGACGCAAGGAGCTCGTCGCCCTCACCGACGGGTACCGCGAGTCCACCGAGTCGTGGGCTGACCTGTTGCG
CAGCTGCCGACGCCGCGGCATGACCGCCCCAGTTCTGGCGGTCGGTGACGGCGCGCTGGGGTTCTGGCGGGCGTTGCGGGAGGTGTTCCCGGAAACCCGG
GAGCAGCGATGCTGGTTCCATAAGCAGGCCAACGTTCTTGCTGCGCTGCCGAAGTCGGCGCATCCGGGTGCGCTCGCGGCGATGAAGGAAATTTACAACG
CCGAGGACATCGACAAAGCGCAAGTGGCGATCAAGGCCTTCGAACTCGACTACGGCGCGAAGTATCCGAAGGCGGTGAAGAAGATCACCGACGACATGGA
TGTGCTGCTCGAGTTCTACAAGTATCCGGCTGAGCACTGGGTGCATCTACGCACGACAAATCCCATCGAATCCACTTTCGCCACAGTGCGACTCCGGACC
AAGGTCACCAAGGGTCCCGGGTCCCGTGCGGCGGGACTTGCCATGGCCTACAAGCTGATCGACGCCGCCCAGGCTCGCTGGCGGGCGGTCAACGCACCAC
ATCTGGTCGCGCTCGTTCGTGCCGGCGCGGTGTTCCACACGGGCAAGCTACTTGAGCGACCCACCGCCATCAGCCCCAACGCCGGGGCGGTCGAGCCCGC
AAGCACCGGAGCGGAGGTTGCCTGAAACTCCCTCATCCACAGGTATTGACAATATCTC
GGCGGGAAGGTACGCCCGTGCTCACGGTAGTACACGACGACGACCGCTCCAACGACGACGTCGGGCGGTCGATGCTCGACGAGATCGTCCGCGATGGTGC
GCGGCAGATGCTGGCGGCCGCGCTGCAGGCGGAGGTGGCCGCCTATATCGAGCAGTTCGCTGATCAGGTCGACGAGAACGGTCGCCGCCTGGTGGTCCGC
AACGGCTACCATCACGAACGCGATGTGCTGACCGCCGCGGGCGCGGTCACCGTGAAGGTTCCCAGAGTGAACGATAAGCGCGTCGACCCGGACACCGGCG
AGCGACAGCGGTTTTCGTCCGCGATCCTGCCGGCCTGGGTACGTAAGTCCCCGCAGATGAACGAGGTGCTGCCGCTGCTGTACCTGCACGGGCTCTCCAC
CAGCGACTTCGGGCCGGCGCTCGAGCAGTTCCTCGGATCCGGTGCCGGACTGTCGGCGGCCTCGATCACCCGGTTGACATCCCAGTGGCAGGACGAGGCC
AAGGCCTTCCAGGATCGGGACCTCTCGGGCACCGACTTCGTCTATCTGTGGGTCGACGGCATCCACCTCAAGGTGAGGCTTGAGCAGGAAAAACTGTGCC
TGCTGGTGATGATCGGTGTCCGTGCGGACGGACGCAAGGAGCTCGTCGCCCTCACCGACGGGTACCGCGAGTCCACCGAGTCGTGGGCTGACCTGTTGCG
CAGCTGCCGACGCCGCGGCATGACCGCCCCAGTTCTGGCGGTCGGTGACGGCGCGCTGGGGTTCTGGCGGGCGTTGCGGGAGGTGTTCCCGGAAACCCGG
GAGCAGCGATGCTGGTTCCATAAGCAGGCCAACGTTCTTGCTGCGCTGCCGAAGTCGGCGCATCCGGGTGCGCTCGCGGCGATGAAGGAAATTTACAACG
CCGAGGACATCGACAAAGCGCAAGTGGCGATCAAGGCCTTCGAACTCGACTACGGCGCGAAGTATCCGAAGGCGGTGAAGAAGATCACCGACGACATGGA
TGTGCTGCTCGAGTTCTACAAGTATCCGGCTGAGCACTGGGTGCATCTACGCACGACAAATCCCATCGAATCCACTTTCGCCACAGTGCGACTCCGGACC
AAGGTCACCAAGGGTCCCGGGTCCCGTGCGGCGGGACTTGCCATGGCCTACAAGCTGATCGACGCCGCCCAGGCTCGCTGGCGGGCGGTCAACGCACCAC
ATCTGGTCGCGCTCGTTCGTGCCGGCGCGGTGTTCCACACGGGCAAGCTACTTGAGCGACCCACCGCCATCAGCCCCAACGCCGGGGCGGTCGAGCCCGC
AAGCACCGGAGCGGAGGTTGCCTGAAACTCCCTCATCCACAGGTATTGACAATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 118 | 1425 | + | No |
Chemistry : DDE
ORF sequence :
MLTVVHDDDRSNDDVGRSMLDEIVRDGARQMLAAALQAEVAAYIEQFADQVDENGRRLVVRNGYHHERDVLTAAGAVTVKVPRVNDKRVDPDTGERQRFS
SAILPAWVRKSPQMNEVLPLLYLHGLSTSDFGPALEQFLGSGAGLSAASITRLTSQWQDEAKAFQDRDLSGTDFVYLWVDGIHLKVRLEQEKLCLLVMIG
VRADGRKELVALTDGYRESTESWADLLRSCRRRGMTAPVLAVGDGALGFWRALREVFPETREQRCWFHKQANVLAALPKSAHPGALAAMKEIYNAEDIDK
AQVAIKAFELDYGAKYPKAVKKITDDMDVLLEFYKYPAEHWVHLRTTNPIESTFATVRLRTKVTKGPGSRAAGLAMAYKLIDAAQARWRAVNAPHLVALV
RAGAVFHTGKLLERPTAISPNAGAVEPASTGAEVA
SAILPAWVRKSPQMNEVLPLLYLHGLSTSDFGPALEQFLGSGAGLSAASITRLTSQWQDEAKAFQDRDLSGTDFVYLWVDGIHLKVRLEQEKLCLLVMIG
VRADGRKELVALTDGYRESTESWADLLRSCRRRGMTAPVLAVGDGALGFWRALREVFPETREQRCWFHKQANVLAALPKSAHPGALAAMKEIYNAEDIDK
AQVAIKAFELDYGAKYPKAVKKITDDMDVLLEFYKYPAEHWVHLRTTNPIESTFATVRLRTKVTKGPGSRAAGLAMAYKLIDAAQARWRAVNAPHLVALV
RAGAVFHTGKLLERPTAISPNAGAVEPASTGAEVA
Blast result :
Comments
ISRjo4 is 90% aa similar to IS666.
References