ISRjo4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008269 ND Rhodococcus jostii
Rhodococcus jostii RHA1 plasmid pRHL1
DNA section
IS Length : 1458 bp

Ends


IR Length : 18/24

IRL : GAGGAATGCTCAGAACCTGTGGATCCCGGGAGGGCGTACCTTCCCGGAAG
IRR : GAGATATTGTCAATACCTGTGGATGAGGGAGTTTCAGGCAACCTCCGCTC

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCGAGTCGACGGCAAATCGCGGATACT9
CTATATCTGGCCGCAGTGCGGATGAACTT9

DNA sequence

GAGGAATGCTCAGAACCTGTGGATCCCGGGAGGGCGTACCTTCCCGGAAGATGATCTACGAAGTTCACAGGAATCTGATCAAGACCAGCGCGCCAACGCT
GGCGGGAAGGTACGCCCGTGCTCACGGTAGTACACGACGACGACCGCTCCAACGACGACGTCGGGCGGTCGATGCTCGACGAGATCGTCCGCGATGGTGC
GCGGCAGATGCTGGCGGCCGCGCTGCAGGCGGAGGTGGCCGCCTATATCGAGCAGTTCGCTGATCAGGTCGACGAGAACGGTCGCCGCCTGGTGGTCCGC
AACGGCTACCATCACGAACGCGATGTGCTGACCGCCGCGGGCGCGGTCACCGTGAAGGTTCCCAGAGTGAACGATAAGCGCGTCGACCCGGACACCGGCG
AGCGACAGCGGTTTTCGTCCGCGATCCTGCCGGCCTGGGTACGTAAGTCCCCGCAGATGAACGAGGTGCTGCCGCTGCTGTACCTGCACGGGCTCTCCAC
CAGCGACTTCGGGCCGGCGCTCGAGCAGTTCCTCGGATCCGGTGCCGGACTGTCGGCGGCCTCGATCACCCGGTTGACATCCCAGTGGCAGGACGAGGCC
AAGGCCTTCCAGGATCGGGACCTCTCGGGCACCGACTTCGTCTATCTGTGGGTCGACGGCATCCACCTCAAGGTGAGGCTTGAGCAGGAAAAACTGTGCC
TGCTGGTGATGATCGGTGTCCGTGCGGACGGACGCAAGGAGCTCGTCGCCCTCACCGACGGGTACCGCGAGTCCACCGAGTCGTGGGCTGACCTGTTGCG
CAGCTGCCGACGCCGCGGCATGACCGCCCCAGTTCTGGCGGTCGGTGACGGCGCGCTGGGGTTCTGGCGGGCGTTGCGGGAGGTGTTCCCGGAAACCCGG
GAGCAGCGATGCTGGTTCCATAAGCAGGCCAACGTTCTTGCTGCGCTGCCGAAGTCGGCGCATCCGGGTGCGCTCGCGGCGATGAAGGAAATTTACAACG
CCGAGGACATCGACAAAGCGCAAGTGGCGATCAAGGCCTTCGAACTCGACTACGGCGCGAAGTATCCGAAGGCGGTGAAGAAGATCACCGACGACATGGA
TGTGCTGCTCGAGTTCTACAAGTATCCGGCTGAGCACTGGGTGCATCTACGCACGACAAATCCCATCGAATCCACTTTCGCCACAGTGCGACTCCGGACC
AAGGTCACCAAGGGTCCCGGGTCCCGTGCGGCGGGACTTGCCATGGCCTACAAGCTGATCGACGCCGCCCAGGCTCGCTGGCGGGCGGTCAACGCACCAC
ATCTGGTCGCGCTCGTTCGTGCCGGCGCGGTGTTCCACACGGGCAAGCTACTTGAGCGACCCACCGCCATCAGCCCCAACGCCGGGGCGGTCGAGCCCGC
AAGCACCGGAGCGGAGGTTGCCTGAAACTCCCTCATCCACAGGTATTGACAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa1181425+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLTVVHDDDRSNDDVGRSMLDEIVRDGARQMLAAALQAEVAAYIEQFADQVDENGRRLVVRNGYHHERDVLTAAGAVTVKVPRVNDKRVDPDTGERQRFS
SAILPAWVRKSPQMNEVLPLLYLHGLSTSDFGPALEQFLGSGAGLSAASITRLTSQWQDEAKAFQDRDLSGTDFVYLWVDGIHLKVRLEQEKLCLLVMIG
VRADGRKELVALTDGYRESTESWADLLRSCRRRGMTAPVLAVGDGALGFWRALREVFPETREQRCWFHKQANVLAALPKSAHPGALAAMKEIYNAEDIDK
AQVAIKAFELDYGAKYPKAVKKITDDMDVLLEFYKYPAEHWVHLRTTNPIESTFATVRLRTKVTKGPGSRAAGLAMAYKLIDAAQARWRAVNAPHLVALV
RAGAVFHTGKLLERPTAISPNAGAVEPASTGAEVA

 

Blast result :
Comments
ISRjo4 is 90% aa similar to IS666.
References