ISCbe6
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012034 | ND | Caldicellulosiruptor bescii | Caldicellulosiruptor bescii DSM 6725 |
DNA section
IS Length : 1552 bp
Ends
IR Length : 26/23
IRL : GAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTCCTTCTTGGTAAG
IRR : GGGTGTGTAAATAATTTTGTGTATTTAAGATAAGCCGTCCTTCTTGGTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTATTATAAA | TTTAATCA | AGATTTAAAC | 8 |
GTTTTCTTCCG | CTTATGAA | TGAAATCAAT | 8 |
ACAGCCTTCTT | AACTGTTTAA | 0 | |
GCATTCAGAAC | AAAAATTTGC | 0 |
DNA sequence
GAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTCCTTCTTGGTAAGAATCAGAATATAACAAAAATATCCAAGAAGGAGGTTTTTTGTTATGGAGA
ATGTTTTAACAAAAGAGCAGCTCTTAGAGTTTATAAGAAAAAATAATATTCAGAGTGTAAGTGATATTTACGAAAGTTTAAAAGACCTGTTCAAAGATGT
ACTTCAAAGCTTTTTAGAAGCAGAAATTGAAGAAACTCTGGGTTATGAAAAATATGATGTTAAAAACAAACAAACTACTAACTCTCGAAACGGATATACT
CAGAAAACCGTAAAAACAAAATTTGGAGAGATGGAAATTGATATTCCAAGAGACAGAGAAGGTGAATTTGAACCCAAGATAATTCCTAAGTATAAAAGAG
ATATCTCTGAAATTGAAGATAAAATAATAGCTTTATATTCCAGAGGGATGACAACAAGAGATATTCATGAACAAATAAAAGATATCTATGGCATTGAAGT
ATCTGCTGAGATGGTAAGCAAAATTACAGAGAAAATTATTCCTGAGATAAGAGAATGGCAAAACAGACCATTGGAAAAGATATATCCGTTTATTTTTATG
GATGCAATTCATTATAAGATAAAAGATGAAGGCAAGATTGTAAATAAGGCTGCTTACGTTGTTTTAGGGATTAACATTGAAGGATATAAGGATGTTTTAG
GAATATGGATAGGAGAAAGTGAAAGTTCTAAATTCTGGCTTGGAGTTTTGAATGATTTAAAGACAAGAGGAGTAGAAGAAGTCCTGCTGTTTTGTGTTGA
TGGCCTTACTGGTTTAAAAGAGGCAATAGAAGCAGTGTTTCCAAAGAGTGATATTCAAAGATGTATAATCCACCAGTTGAGAAATTCATTTAAGTATGTT
TCGTATAAACACATAAAAGAATTTTCAAAAGATTTCAAGAGAGTATACCAGGCAACAAATGAAGAAGAGGCATTTGAGAATTTTTGTCAAATAAAAGAGA
AATGGGGGAAACAATATCCTTATGCATTTAGAAGCTGGGAAAGCAACTGGGAAATGCTGACCTCGTTTTTTAAGTTTCCCCCAGAGATTAGAAGAATAAT
TTATACAACAAACATTATAGAAGGTGTTCACAGACAGTTTAGGAAAGTTACAAAGTCAAAATCAGTATTTCCAAATGATATAGCTTTAGAAAAGATGCTT
TATCTTGCGACTAAAAATGTTGTAAGAAAATGGACGCAAAGATACAGAAACTGGGATATGATATTAAACCAGCTTTTAATAATGTATCCTGAGCGGTTGA
GAGAATATATAAAGTAGAAGCAATCATTTGTTCGTGTTTTTTTTAACTGCTTCTATAGAAGCAGTTAAAAAAACAAATAAAAAAAAAGATAATATAACCC
AGTATTAAATTTTCTCCATGAAGTTAAAAATTTATGCATAAAAAATATTAAAATGGAAATACTAAAAAATAGAAAGTTGGCAATTAAATTTTGAATGATT
ACTTACCAAGAAGGACGGCTTATCTTAAATACACAAAATTATTTACACACCC
ATGTTTTAACAAAAGAGCAGCTCTTAGAGTTTATAAGAAAAAATAATATTCAGAGTGTAAGTGATATTTACGAAAGTTTAAAAGACCTGTTCAAAGATGT
ACTTCAAAGCTTTTTAGAAGCAGAAATTGAAGAAACTCTGGGTTATGAAAAATATGATGTTAAAAACAAACAAACTACTAACTCTCGAAACGGATATACT
CAGAAAACCGTAAAAACAAAATTTGGAGAGATGGAAATTGATATTCCAAGAGACAGAGAAGGTGAATTTGAACCCAAGATAATTCCTAAGTATAAAAGAG
ATATCTCTGAAATTGAAGATAAAATAATAGCTTTATATTCCAGAGGGATGACAACAAGAGATATTCATGAACAAATAAAAGATATCTATGGCATTGAAGT
ATCTGCTGAGATGGTAAGCAAAATTACAGAGAAAATTATTCCTGAGATAAGAGAATGGCAAAACAGACCATTGGAAAAGATATATCCGTTTATTTTTATG
GATGCAATTCATTATAAGATAAAAGATGAAGGCAAGATTGTAAATAAGGCTGCTTACGTTGTTTTAGGGATTAACATTGAAGGATATAAGGATGTTTTAG
GAATATGGATAGGAGAAAGTGAAAGTTCTAAATTCTGGCTTGGAGTTTTGAATGATTTAAAGACAAGAGGAGTAGAAGAAGTCCTGCTGTTTTGTGTTGA
TGGCCTTACTGGTTTAAAAGAGGCAATAGAAGCAGTGTTTCCAAAGAGTGATATTCAAAGATGTATAATCCACCAGTTGAGAAATTCATTTAAGTATGTT
TCGTATAAACACATAAAAGAATTTTCAAAAGATTTCAAGAGAGTATACCAGGCAACAAATGAAGAAGAGGCATTTGAGAATTTTTGTCAAATAAAAGAGA
AATGGGGGAAACAATATCCTTATGCATTTAGAAGCTGGGAAAGCAACTGGGAAATGCTGACCTCGTTTTTTAAGTTTCCCCCAGAGATTAGAAGAATAAT
TTATACAACAAACATTATAGAAGGTGTTCACAGACAGTTTAGGAAAGTTACAAAGTCAAAATCAGTATTTCCAAATGATATAGCTTTAGAAAAGATGCTT
TATCTTGCGACTAAAAATGTTGTAAGAAAATGGACGCAAAGATACAGAAACTGGGATATGATATTAAACCAGCTTTTAATAATGTATCCTGAGCGGTTGA
GAGAATATATAAAGTAGAAGCAATCATTTGTTCGTGTTTTTTTTAACTGCTTCTATAGAAGCAGTTAAAAAAACAAATAAAAAAAAAGATAATATAACCC
AGTATTAAATTTTCTCCATGAAGTTAAAAATTTATGCATAAAAAATATTAAAATGGAAATACTAAAAAATAGAAAGTTGGCAATTAAATTTTGAATGATT
ACTTACCAAGAAGGACGGCTTATCTTAAATACACAAAATTATTTACACACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 94 | 1317 | + | No |
Description :
ORF sequence :
MENVLTKEQLLEFIRKNNIQSVSDIYESLKDLFKDVLQSFLEAEIEETLGYEKYDVKNKQTTNSRNGYTQKTVKTKFGEMEIDIPRDREGEFEPKIIPKY
KRDISEIEDKIIALYSRGMTTRDIHEQIKDIYGIEVSAEMVSKITEKIIPEIREWQNRPLEKIYPFIFMDAIHYKIKDEGKIVNKAAYVVLGINIEGYKD
VLGIWIGESESSKFWLGVLNDLKTRGVEEVLLFCVDGLTGLKEAIEAVFPKSDIQRCIIHQLRNSFKYVSYKHIKEFSKDFKRVYQATNEEEAFENFCQI
KEKWGKQYPYAFRSWESNWEMLTSFFKFPPEIRRIIYTTNIIEGVHRQFRKVTKSKSVFPNDIALEKMLYLATKNVVRKWTQRYRNWDMILNQLLIMYPE
RLREYIK
KRDISEIEDKIIALYSRGMTTRDIHEQIKDIYGIEVSAEMVSKITEKIIPEIREWQNRPLEKIYPFIFMDAIHYKIKDEGKIVNKAAYVVLGINIEGYKD
VLGIWIGESESSKFWLGVLNDLKTRGVEEVLLFCVDGLTGLKEAIEAVFPKSDIQRCIIHQLRNSFKYVSYKHIKEFSKDFKRVYQATNEEEAFENFCQI
KEKWGKQYPYAFRSWESNWEMLTSFFKFPPEIRRIIYTTNIIEGVHRQFRKVTKSKSVFPNDIALEKMLYLATKNVVRKWTQRYRNWDMILNQLLIMYPE
RLREYIK
Blast result :
Comments
ISCbe6 is 78% aa similar to ISCth4.
References