ISCbe6

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012034 ND Caldicellulosiruptor bescii
Caldicellulosiruptor bescii DSM 6725
DNA section
IS Length : 1552 bp

Ends


IR Length : 26/23

IRL : GAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTCCTTCTTGGTAAG
IRR : GGGTGTGTAAATAATTTTGTGTATTTAAGATAAGCCGTCCTTCTTGGTAA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTATTATAAATTTAATCAAGATTTAAAC8
GTTTTCTTCCGCTTATGAATGAAATCAAT8
ACAGCCTTCTTAACTGTTTAA0
GCATTCAGAACAAAAATTTGC0

DNA sequence

GAGACTATAAATAATTTTGTGTAAAGTATAAGAACCTCCTTCTTGGTAAGAATCAGAATATAACAAAAATATCCAAGAAGGAGGTTTTTTGTTATGGAGA
ATGTTTTAACAAAAGAGCAGCTCTTAGAGTTTATAAGAAAAAATAATATTCAGAGTGTAAGTGATATTTACGAAAGTTTAAAAGACCTGTTCAAAGATGT
ACTTCAAAGCTTTTTAGAAGCAGAAATTGAAGAAACTCTGGGTTATGAAAAATATGATGTTAAAAACAAACAAACTACTAACTCTCGAAACGGATATACT
CAGAAAACCGTAAAAACAAAATTTGGAGAGATGGAAATTGATATTCCAAGAGACAGAGAAGGTGAATTTGAACCCAAGATAATTCCTAAGTATAAAAGAG
ATATCTCTGAAATTGAAGATAAAATAATAGCTTTATATTCCAGAGGGATGACAACAAGAGATATTCATGAACAAATAAAAGATATCTATGGCATTGAAGT
ATCTGCTGAGATGGTAAGCAAAATTACAGAGAAAATTATTCCTGAGATAAGAGAATGGCAAAACAGACCATTGGAAAAGATATATCCGTTTATTTTTATG
GATGCAATTCATTATAAGATAAAAGATGAAGGCAAGATTGTAAATAAGGCTGCTTACGTTGTTTTAGGGATTAACATTGAAGGATATAAGGATGTTTTAG
GAATATGGATAGGAGAAAGTGAAAGTTCTAAATTCTGGCTTGGAGTTTTGAATGATTTAAAGACAAGAGGAGTAGAAGAAGTCCTGCTGTTTTGTGTTGA
TGGCCTTACTGGTTTAAAAGAGGCAATAGAAGCAGTGTTTCCAAAGAGTGATATTCAAAGATGTATAATCCACCAGTTGAGAAATTCATTTAAGTATGTT
TCGTATAAACACATAAAAGAATTTTCAAAAGATTTCAAGAGAGTATACCAGGCAACAAATGAAGAAGAGGCATTTGAGAATTTTTGTCAAATAAAAGAGA
AATGGGGGAAACAATATCCTTATGCATTTAGAAGCTGGGAAAGCAACTGGGAAATGCTGACCTCGTTTTTTAAGTTTCCCCCAGAGATTAGAAGAATAAT
TTATACAACAAACATTATAGAAGGTGTTCACAGACAGTTTAGGAAAGTTACAAAGTCAAAATCAGTATTTCCAAATGATATAGCTTTAGAAAAGATGCTT
TATCTTGCGACTAAAAATGTTGTAAGAAAATGGACGCAAAGATACAGAAACTGGGATATGATATTAAACCAGCTTTTAATAATGTATCCTGAGCGGTTGA
GAGAATATATAAAGTAGAAGCAATCATTTGTTCGTGTTTTTTTTAACTGCTTCTATAGAAGCAGTTAAAAAAACAAATAAAAAAAAAGATAATATAACCC
AGTATTAAATTTTCTCCATGAAGTTAAAAATTTATGCATAAAAAATATTAAAATGGAAATACTAAAAAATAGAAAGTTGGCAATTAAATTTTGAATGATT
ACTTACCAAGAAGGACGGCTTATCTTAAATACACAAAATTATTTACACACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa941317+No
ORF function : Transposase
Description :

ORF sequence :

MENVLTKEQLLEFIRKNNIQSVSDIYESLKDLFKDVLQSFLEAEIEETLGYEKYDVKNKQTTNSRNGYTQKTVKTKFGEMEIDIPRDREGEFEPKIIPKY
KRDISEIEDKIIALYSRGMTTRDIHEQIKDIYGIEVSAEMVSKITEKIIPEIREWQNRPLEKIYPFIFMDAIHYKIKDEGKIVNKAAYVVLGINIEGYKD
VLGIWIGESESSKFWLGVLNDLKTRGVEEVLLFCVDGLTGLKEAIEAVFPKSDIQRCIIHQLRNSFKYVSYKHIKEFSKDFKRVYQATNEEEAFENFCQI
KEKWGKQYPYAFRSWESNWEMLTSFFKFPPEIRRIIYTTNIIEGVHRQFRKVTKSKSVFPNDIALEKMLYLATKNVVRKWTQRYRNWDMILNQLLIMYPE
RLREYIK

 

Blast result :
Comments
ISCbe6 is 78% aa similar to ISCth4.
References