ISCob1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014392 | ND | Caldicellulosiruptor obsidiansis | Caldicellulosiruptor obsidiansis OB47 |
DNA section
IS Length : 1556 bp
Ends
IR Length : 19/23
IRL : GAGACTATAAGTAATTTTGTGTAAAGTATAAGGACCTCCTTCTTGGTAAG
IRR : GGGTCTGTAAATAATTTTGTGTATTTAAATTGAACCATCCCTCTTGGTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGCCCATGA | TTTTTCAA | GTTTAGCCTT | 8 |
AAAAGGGCTA | TCCTCGTC | TCTTTGTGGA | 8 |
GGCATGAGAA | GTTTTTTCT | CTAAACACTA | 9 |
CCCTTTTCCA | TTTTAACT | TGTGCTTCAT | 8 |
CGTTTTGGGG | GAATTTTTCT | 0 | |
AATAGTGTTT | TATTTAACGT | 0 |
DNA sequence
GAGACTATAAGTAATTTTGTGTAAAGTATAAGGACCTCCTTCTTGGTAAGAATCAGAATATAAACAAAAATATCCAAGAAGGAGGTTTTTTGTTATGGAA
AATGTTTTAACAAAAGAGCAGCTCTTAGAGTTTATAAGAAAAAACAATATTCAGAGTGTGAGTGATATTTACGAAAGCTTAAAAGACTTGTTTAAGAGTG
TACTTCAAAGCTTTTTAGAAGCAGAGATTGAAGAAACTCTGGGTTATGAAAAGTATGACGTTAAGAACAAACAAACTACTAACTCTCGAAACGGATATAC
TCAGAAGACTGTAAAAACAAAATTTGGAGAGATGGAAATTGATATACCAAGAGACAGAGAAGGTGAATTTGAACCCAAGATAATTCCCAAATATAAAAGA
GATATCTCTGAAATTGAAGATAAAATAATAGCTTTATATTCCAGAGCAATAGCAACACGAGACATTCATGAGCAAATTAAAGATATTTATGGTATTGAAG
TATCTGCTGAGATGGTAAGCAAAATTACAGAAAAAATAATACCAGAGATAAGAGAATGGCAAAACAGACCGTTAGAAAAGATATATCCGTTTATCTTTAT
GGATGCAATTCATTACAAGATAAAAGATGAAGGCAGGATTGTAAACAAAGCTGCTTACGTTGTTTTAGGAATTAACATTGAGGGATATAAGGATGTTTTA
GGGATATGGATTGGAGAAAGTGAAAGCTCTAAATTCTGGTTGGGTGTTTTGAATGACCTGAAAACAAGAGGAGTAGAAGAGGTATTACTGTTTTGTGTTG
ATGGCCTTACTGGTTTAAAAGAGGCAATAGAAGCAGTGTTCCCAAAAAGCGATATTCAAAGGTGTATTATTCATCAGCTCAGAAATTCATTCAAATATGT
TTCATACAAGCATATAAAAGAATTTTCAAAGGATTTTAAAAAAGTGTATCAGGCAACTAATGAAGAAGAAGCACTGGAAAATTTTTATCAGGTAAAAGAA
AAATGGGGGAAACAGTATCCTTATGCGTTCAGGAGTTGGGAAAGCAATTGGGATTCACTAACTTCGTTTTTTAAGTTTCCCCCAGAGATAAGGAAGATAA
TTTATACAACAAACATCATAGAAGGAGTTCATAGACAATTTAGAAAAGTGACAAAAGCAAAATCAGTATTTCCAAACGATACAGCGTTAGAGAAGATGCT
TTATCTTGCGACAAAAAATGTTGTAAGAAAGTGGACACAGAGGTACAGAAATTGGGATATAATATTAAATCAGCTTTTGATAATGTATCCAGAACGTTTA
AGTGGATATATAAATTAATAACAAACTTCAGTTCGCTTTTAGATTGCTTCCATGGAAGCAATCTAAAACAAATTAGAACCAGAAAAATCAGAGCAATATA
TCCCAGTATCAAATTTTGTCCAGCTTTTAAAAAATTTATGCATAAAAATTTTTAAAATGGTAATACTAAAAAATAGAAGGTAGACAGGATTATCCTGAAT
GATTTCTTACCAAGAGGGATGGTTCAATTTAAATACACAAAATTATTTACAGACCC
AATGTTTTAACAAAAGAGCAGCTCTTAGAGTTTATAAGAAAAAACAATATTCAGAGTGTGAGTGATATTTACGAAAGCTTAAAAGACTTGTTTAAGAGTG
TACTTCAAAGCTTTTTAGAAGCAGAGATTGAAGAAACTCTGGGTTATGAAAAGTATGACGTTAAGAACAAACAAACTACTAACTCTCGAAACGGATATAC
TCAGAAGACTGTAAAAACAAAATTTGGAGAGATGGAAATTGATATACCAAGAGACAGAGAAGGTGAATTTGAACCCAAGATAATTCCCAAATATAAAAGA
GATATCTCTGAAATTGAAGATAAAATAATAGCTTTATATTCCAGAGCAATAGCAACACGAGACATTCATGAGCAAATTAAAGATATTTATGGTATTGAAG
TATCTGCTGAGATGGTAAGCAAAATTACAGAAAAAATAATACCAGAGATAAGAGAATGGCAAAACAGACCGTTAGAAAAGATATATCCGTTTATCTTTAT
GGATGCAATTCATTACAAGATAAAAGATGAAGGCAGGATTGTAAACAAAGCTGCTTACGTTGTTTTAGGAATTAACATTGAGGGATATAAGGATGTTTTA
GGGATATGGATTGGAGAAAGTGAAAGCTCTAAATTCTGGTTGGGTGTTTTGAATGACCTGAAAACAAGAGGAGTAGAAGAGGTATTACTGTTTTGTGTTG
ATGGCCTTACTGGTTTAAAAGAGGCAATAGAAGCAGTGTTCCCAAAAAGCGATATTCAAAGGTGTATTATTCATCAGCTCAGAAATTCATTCAAATATGT
TTCATACAAGCATATAAAAGAATTTTCAAAGGATTTTAAAAAAGTGTATCAGGCAACTAATGAAGAAGAAGCACTGGAAAATTTTTATCAGGTAAAAGAA
AAATGGGGGAAACAGTATCCTTATGCGTTCAGGAGTTGGGAAAGCAATTGGGATTCACTAACTTCGTTTTTTAAGTTTCCCCCAGAGATAAGGAAGATAA
TTTATACAACAAACATCATAGAAGGAGTTCATAGACAATTTAGAAAAGTGACAAAAGCAAAATCAGTATTTCCAAACGATACAGCGTTAGAGAAGATGCT
TTATCTTGCGACAAAAAATGTTGTAAGAAAGTGGACACAGAGGTACAGAAATTGGGATATAATATTAAATCAGCTTTTGATAATGTATCCAGAACGTTTA
AGTGGATATATAAATTAATAACAAACTTCAGTTCGCTTTTAGATTGCTTCCATGGAAGCAATCTAAAACAAATTAGAACCAGAAAAATCAGAGCAATATA
TCCCAGTATCAAATTTTGTCCAGCTTTTAAAAAATTTATGCATAAAAATTTTTAAAATGGTAATACTAAAAAATAGAAGGTAGACAGGATTATCCTGAAT
GATTTCTTACCAAGAGGGATGGTTCAATTTAAATACACAAAATTATTTACAGACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 95 | 1318 | + | No |
Description :
ORF sequence :
MENVLTKEQLLEFIRKNNIQSVSDIYESLKDLFKSVLQSFLEAEIEETLGYEKYDVKNKQTTNSRNGYTQKTVKTKFGEMEIDIPRDREGEFEPKIIPKY
KRDISEIEDKIIALYSRAIATRDIHEQIKDIYGIEVSAEMVSKITEKIIPEIREWQNRPLEKIYPFIFMDAIHYKIKDEGRIVNKAAYVVLGINIEGYKD
VLGIWIGESESSKFWLGVLNDLKTRGVEEVLLFCVDGLTGLKEAIEAVFPKSDIQRCIIHQLRNSFKYVSYKHIKEFSKDFKKVYQATNEEEALENFYQV
KEKWGKQYPYAFRSWESNWDSLTSFFKFPPEIRKIIYTTNIIEGVHRQFRKVTKAKSVFPNDTALEKMLYLATKNVVRKWTQRYRNWDIILNQLLIMYPE
RLSGYIN
KRDISEIEDKIIALYSRAIATRDIHEQIKDIYGIEVSAEMVSKITEKIIPEIREWQNRPLEKIYPFIFMDAIHYKIKDEGRIVNKAAYVVLGINIEGYKD
VLGIWIGESESSKFWLGVLNDLKTRGVEEVLLFCVDGLTGLKEAIEAVFPKSDIQRCIIHQLRNSFKYVSYKHIKEFSKDFKKVYQATNEEEALENFYQV
KEKWGKQYPYAFRSWESNWDSLTSFFKFPPEIRKIIYTTNIIEGVHRQFRKVTKAKSVFPNDTALEKMLYLATKNVVRKWTQRYRNWDIILNQLLIMYPE
RLSGYIN
Blast result :
Comments
ISCob1 is 76% aa similar to ISDku1.
References