ISCob1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014392 ND Caldicellulosiruptor obsidiansis
Caldicellulosiruptor obsidiansis OB47
DNA section
IS Length : 1556 bp

Ends


IR Length : 19/23

IRL : GAGACTATAAGTAATTTTGTGTAAAGTATAAGGACCTCCTTCTTGGTAAG
IRR : GGGTCTGTAAATAATTTTGTGTATTTAAATTGAACCATCCCTCTTGGTAA

Insertion site


Left flankDirect repeatRight flankDR Length
GTGCCCATGATTTTTCAAGTTTAGCCTT8
AAAAGGGCTATCCTCGTCTCTTTGTGGA8
GGCATGAGAAGTTTTTTCTCTAAACACTA9
CCCTTTTCCATTTTAACTTGTGCTTCAT8
CGTTTTGGGGGAATTTTTCT0
AATAGTGTTTTATTTAACGT0

DNA sequence

GAGACTATAAGTAATTTTGTGTAAAGTATAAGGACCTCCTTCTTGGTAAGAATCAGAATATAAACAAAAATATCCAAGAAGGAGGTTTTTTGTTATGGAA
AATGTTTTAACAAAAGAGCAGCTCTTAGAGTTTATAAGAAAAAACAATATTCAGAGTGTGAGTGATATTTACGAAAGCTTAAAAGACTTGTTTAAGAGTG
TACTTCAAAGCTTTTTAGAAGCAGAGATTGAAGAAACTCTGGGTTATGAAAAGTATGACGTTAAGAACAAACAAACTACTAACTCTCGAAACGGATATAC
TCAGAAGACTGTAAAAACAAAATTTGGAGAGATGGAAATTGATATACCAAGAGACAGAGAAGGTGAATTTGAACCCAAGATAATTCCCAAATATAAAAGA
GATATCTCTGAAATTGAAGATAAAATAATAGCTTTATATTCCAGAGCAATAGCAACACGAGACATTCATGAGCAAATTAAAGATATTTATGGTATTGAAG
TATCTGCTGAGATGGTAAGCAAAATTACAGAAAAAATAATACCAGAGATAAGAGAATGGCAAAACAGACCGTTAGAAAAGATATATCCGTTTATCTTTAT
GGATGCAATTCATTACAAGATAAAAGATGAAGGCAGGATTGTAAACAAAGCTGCTTACGTTGTTTTAGGAATTAACATTGAGGGATATAAGGATGTTTTA
GGGATATGGATTGGAGAAAGTGAAAGCTCTAAATTCTGGTTGGGTGTTTTGAATGACCTGAAAACAAGAGGAGTAGAAGAGGTATTACTGTTTTGTGTTG
ATGGCCTTACTGGTTTAAAAGAGGCAATAGAAGCAGTGTTCCCAAAAAGCGATATTCAAAGGTGTATTATTCATCAGCTCAGAAATTCATTCAAATATGT
TTCATACAAGCATATAAAAGAATTTTCAAAGGATTTTAAAAAAGTGTATCAGGCAACTAATGAAGAAGAAGCACTGGAAAATTTTTATCAGGTAAAAGAA
AAATGGGGGAAACAGTATCCTTATGCGTTCAGGAGTTGGGAAAGCAATTGGGATTCACTAACTTCGTTTTTTAAGTTTCCCCCAGAGATAAGGAAGATAA
TTTATACAACAAACATCATAGAAGGAGTTCATAGACAATTTAGAAAAGTGACAAAAGCAAAATCAGTATTTCCAAACGATACAGCGTTAGAGAAGATGCT
TTATCTTGCGACAAAAAATGTTGTAAGAAAGTGGACACAGAGGTACAGAAATTGGGATATAATATTAAATCAGCTTTTGATAATGTATCCAGAACGTTTA
AGTGGATATATAAATTAATAACAAACTTCAGTTCGCTTTTAGATTGCTTCCATGGAAGCAATCTAAAACAAATTAGAACCAGAAAAATCAGAGCAATATA
TCCCAGTATCAAATTTTGTCCAGCTTTTAAAAAATTTATGCATAAAAATTTTTAAAATGGTAATACTAAAAAATAGAAGGTAGACAGGATTATCCTGAAT
GATTTCTTACCAAGAGGGATGGTTCAATTTAAATACACAAAATTATTTACAGACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa951318+No
ORF function : Transposase
Description :

ORF sequence :

MENVLTKEQLLEFIRKNNIQSVSDIYESLKDLFKSVLQSFLEAEIEETLGYEKYDVKNKQTTNSRNGYTQKTVKTKFGEMEIDIPRDREGEFEPKIIPKY
KRDISEIEDKIIALYSRAIATRDIHEQIKDIYGIEVSAEMVSKITEKIIPEIREWQNRPLEKIYPFIFMDAIHYKIKDEGRIVNKAAYVVLGINIEGYKD
VLGIWIGESESSKFWLGVLNDLKTRGVEEVLLFCVDGLTGLKEAIEAVFPKSDIQRCIIHQLRNSFKYVSYKHIKEFSKDFKKVYQATNEEEALENFYQV
KEKWGKQYPYAFRSWESNWDSLTSFFKFPPEIRKIIYTTNIIEGVHRQFRKVTKAKSVFPNDTALEKMLYLATKNVVRKWTQRYRNWDIILNQLLIMYPE
RLSGYIN

 

Blast result :
Comments
ISCob1 is 76% aa similar to ISDku1.
References