ISOan5

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS990574.1 ND Octadecabacter antarcticus
Octadecabacter antarcticus 307
DNA section
IS Length : 1387 bp

Ends


IR Length : 21/29

IRL : GAGATATGACTGAATCTAGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTAT
IRR : GAGTTATTGTCAAATCTGGTGTTTGAGGGTTGTCGGTCATGCGGCGATCT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGCTTGGCTAGCTGGGAGCAGACGAAAC9
ATTACTCGGTGCCAGTAGCCTATGCGCACC9
TGGATCAGGGTTTCATTTAGGCTGCCAATC9

DNA sequence

GAGATATGACTGAATCTAGTGTTTGAGTGGTTTGAAGGTTGGCGGCGTATCTGGTTGAATTGTTGTTGGAAGACAGCAGCCCAACCGAAGGAGATACACC
ACCATGGAAACGACTAACATTGTTGATTTTGCGCGTCGAGACGGGATGACGGACGCGCTGACGGAGTTGCTGAAAACGGGAGCACAACAATTGATAGCGA
CAGCAGTTGAGGCCGAGCTTGTCAGTTATCTGGCGCAATTTACCGGCTTACGCACCGATGCCGGTCACGCGGCAGTCGTGCGCAATGGACATCATCCGGC
TCGCCCATTTCAAACGGGCATTGGCCCTGTGAGCGTGCGGATTCCAAAGGTCCGCTCGAAGGATGGCACACCAGTAACATTCCGCTCGGCCCTGGTGCCA
CCCTATGTGCGTAGAACCAAGACCTTGGAAGCTGCCTTGCCGTGGCTTTACCTCAAAGGCATTTCCAGCGGTGAGATGGCCCCAGCCCTCAAGGTTCTCT
TGGGCCCTGATGCCAAGGGATTGTCAGCAAATACGGTTTCGCGTTTAAAACGCGATTGGGCCAATGAATACGAGGCTTGGAAAGACGCTGAGTTAGATGA
TGAGCCAATCGTCTACATCTGGGCTGACGGCGTTCACAGCGGCCTTCGGGGCGAGGATGACAAGCTCTGCGCCCTTGTAATTGTTGGCGTCACAGCCCGT
GGCAAGAAGCGGTTCTTGGCCATTGAGGACGGGGTGCGCGAGTCCACCCAGAGCTGGCGAGAAGTTCTGCTCAGCCTCAAAAGCCAGGGAATGAATGCCC
CAAAATTGGCGATTGGAGACGGTGCCATGGGGTTCTGGGCCGCCATGGATGAAGTCTACCCCACGGCCCGACAGCAGCGGTGCTGGCAACACAAAACGAT
GAACGTGCTCAACTGCCTGCCCAAGCTATCACAGCCAAAGGCCAAAGCGGCGATCCACAACATCTGGCAGGCTGAGACCAAAGATGATGCGGAAAAGGCG
TTCGATTTGTTCATCAAAATCTACGAACCCAAATATCCCAAGGCGGCGCTGTGCCTGCAAAAAGACCGCGAAGAACTCATGGCATTCTTCGACTTCCCCG
CCCAACATTGGCAGAGTATCCGCACCAGCAACCCAATTGAATCGGCCTTCGCCACGATCCGACATCGCACCAAGCGCTCAAAGGGCTGCCTGTCACGCGA
TGGCATGCTGCACATGATGTTCAAGCTGGGACAATGCGCAGAGCAAAACTGGAGGAAGCTACGCGGCTTTGATTACCTGGCCAAAGTCATCACAGGCGTC
AAGTTCAAAGACGGAATTGAAACCACCAACCACAGCCAGATCGCCGCATGACCGACAACCCTCAAACACCAGATTTGACAATAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa1041351+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

METTNIVDFARRDGMTDALTELLKTGAQQLIATAVEAELVSYLAQFTGLRTDAGHAAVVRNGHHPARPFQTGIGPVSVRIPKVRSKDGTPVTFRSALVPP
YVRRTKTLEAALPWLYLKGISSGEMAPALKVLLGPDAKGLSANTVSRLKRDWANEYEAWKDAELDDEPIVYIWADGVHSGLRGEDDKLCALVIVGVTARG
KKRFLAIEDGVRESTQSWREVLLSLKSQGMNAPKLAIGDGAMGFWAAMDEVYPTARQQRCWQHKTMNVLNCLPKLSQPKAKAAIHNIWQAETKDDAEKAF
DLFIKIYEPKYPKAALCLQKDREELMAFFDFPAQHWQSIRTSNPIESAFATIRHRTKRSKGCLSRDGMLHMMFKLGQCAEQNWRKLRGFDYLAKVITGVK
FKDGIETTNHSQIAA

 

Blast result :
Comments
ISOan5 is 70% aa similar to ISPpa1.
References