ISWch1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_014225 | ND | Waddlia chondrophila | Waddlia chondrophila 2032/99 Waddlia chondrophila WSU 86-1044 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 21/24
IRL : GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAA
IRR : GAGATATTTTCAAATGTTGTGTTTCGAATCCTTAAGCGCACCCTAATTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAACTGCTGCCAGACTTGT | TTCGTGACTCTAGGTTTGATTT | 0 | |
AAACTCTCAGAGAGGAAAAT | AAAGATTTTCTTGATGAATA | 0 | |
TTGCGAATTCTTCTTGGTAA | CTTCAGGTGATGGGGTTGCC | 0 | |
AGCGCCAAGCAACTTCGCCT | TGGGGTAGCACCATCTTCTT | 0 | |
AACATTTCGGAACCTTCAGA | CTTTACTTGCGAAGCGATCG | 0 | |
AAGGATATCTTCATTTCCTC | TTTCCTCCGATCCTCACATT | 0 | |
TATCTAATCTTGCCCACGCA | GTTCTTGGCAGCCAAA ATCT | 0 | |
ATTTAATTGAATTTTAGGAA | ATTTTAGACTATCTGAGAAA | 0 |
DNA sequence
GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAAATTTTAGAATCAAAAAAATTTATAGGAGATACGCTCATGAAGAATGATGT
CATTTCTTTGGATAAATTTCACGCAACAAGTGAAATGAACAGCTTGCTGGAACAAACATTGAGGGAAGGAGCTCGCCTGTTGCTTCAACAGGCTATTGAA
AATGAAGTCAATGAATACCTGGAATCGATGAAAAGCAGGAGGGATTTCGAGGGAAGAAAACAATTTGTCCGCAACGGCTACCTCCCTGAAAGAGAAGTAC
AAACAGGAATCGGACCGATATCAGTGAAGCAACCTAGAATTCGAAACAGAGAAGAGAGCTCTGAAGGGTACTCAAGCGCAATTCTTCCGAAATATCTAAG
GAGGGTGCCATCTCTTGATGCGGTGATTCCAGCTCTTTACCTCAGGGGGATTTCTACAAGCAATTTCCAGGATGCACTTGAAGCGATCATGGGCAAGGAT
GCGAAAGGATTATCCGCAGCTAACATCACTCGTTTAAAACAATCTTGGGAGCAGGAATACAAAGACTGGAACAAGCGCTCTCTTGAAGGAAAGCGCTACG
CTTACATCTGGGTAGATGGGATCTATTTCAATGTTCGTCTTGGAGATGACCGAATTTGCTTTCTCGTGATTCTTGGCGCTCTTCCTAATGGTAAAAAGGA
ACTTGTGGCGATCCACAATGGTTATAGAGAGAGCAAAATTTCCTGGACAGAGGTATTGGAGAGTTTGAAGCGGCGCGGGCTGTGTACAGCTCCTGAGCTT
GCGATAGGAGATGGTGCGCTTGGATTTTGGTCGGCAATAGAGGAAGTTTTTCCGAAGACAAAGCAGCAGCGGTGTTGGGTGCATAAAACGGCCAATGTGC
TGGATAAAATGCCCAAAAGTATTCAAGTGAATGCGAAAAAGGCCATTCATGAAATTTATATGGCCCCTACCAAAGAAGATGGACTGGCGGCGTTTGAGGT
GTTTTTAAAAACATACCGAGACAAATACCCCAAAGCCTGTGCTTGTCTTGAGAAGGATAAGGCGCAACTGTTTACCTTCTACAATTTTCCGGCGATCCAT
TGGCAGCACGTCAGGACAACTAACCCGATTGAATCGACTTTTGCAACAATAAGACACCGGACAAGGCAAACCAAAGGCTGCGGTTCAGTGGCTGCCACTT
TGACAATGGTATTCAAGCTGGCTACTACAGCCGAGAAAAAATGGAGAAAACTCAAAGGTTGTGAAATGATTGAAAAAGTAATCAACGGAGTGGTCTTTAA
AGATGGAGAAGAGGTTCTGGAAAAAGAAAAAGTAGCTTAAAAGAATTTTTAAATTAGGGTGCGCTTAAGGATTCGAAACACAACATTTGAAAATATCTC
CATTTCTTTGGATAAATTTCACGCAACAAGTGAAATGAACAGCTTGCTGGAACAAACATTGAGGGAAGGAGCTCGCCTGTTGCTTCAACAGGCTATTGAA
AATGAAGTCAATGAATACCTGGAATCGATGAAAAGCAGGAGGGATTTCGAGGGAAGAAAACAATTTGTCCGCAACGGCTACCTCCCTGAAAGAGAAGTAC
AAACAGGAATCGGACCGATATCAGTGAAGCAACCTAGAATTCGAAACAGAGAAGAGAGCTCTGAAGGGTACTCAAGCGCAATTCTTCCGAAATATCTAAG
GAGGGTGCCATCTCTTGATGCGGTGATTCCAGCTCTTTACCTCAGGGGGATTTCTACAAGCAATTTCCAGGATGCACTTGAAGCGATCATGGGCAAGGAT
GCGAAAGGATTATCCGCAGCTAACATCACTCGTTTAAAACAATCTTGGGAGCAGGAATACAAAGACTGGAACAAGCGCTCTCTTGAAGGAAAGCGCTACG
CTTACATCTGGGTAGATGGGATCTATTTCAATGTTCGTCTTGGAGATGACCGAATTTGCTTTCTCGTGATTCTTGGCGCTCTTCCTAATGGTAAAAAGGA
ACTTGTGGCGATCCACAATGGTTATAGAGAGAGCAAAATTTCCTGGACAGAGGTATTGGAGAGTTTGAAGCGGCGCGGGCTGTGTACAGCTCCTGAGCTT
GCGATAGGAGATGGTGCGCTTGGATTTTGGTCGGCAATAGAGGAAGTTTTTCCGAAGACAAAGCAGCAGCGGTGTTGGGTGCATAAAACGGCCAATGTGC
TGGATAAAATGCCCAAAAGTATTCAAGTGAATGCGAAAAAGGCCATTCATGAAATTTATATGGCCCCTACCAAAGAAGATGGACTGGCGGCGTTTGAGGT
GTTTTTAAAAACATACCGAGACAAATACCCCAAAGCCTGTGCTTGTCTTGAGAAGGATAAGGCGCAACTGTTTACCTTCTACAATTTTCCGGCGATCCAT
TGGCAGCACGTCAGGACAACTAACCCGATTGAATCGACTTTTGCAACAATAAGACACCGGACAAGGCAAACCAAAGGCTGCGGTTCAGTGGCTGCCACTT
TGACAATGGTATTCAAGCTGGCTACTACAGCCGAGAAAAAATGGAGAAAACTCAAAGGTTGTGAAATGATTGAAAAAGTAATCAACGGAGTGGTCTTTAA
AGATGGAGAAGAGGTTCTGGAAAAAGAAAAAGTAGCTTAAAAGAATTTTTAAATTAGGGTGCGCTTAAGGATTCGAAACACAACATTTGAAAATATCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 87 | 1340 | + | No |
Chemistry : DDE
ORF sequence :
MKNDVISLDKFHATSEMNSLLEQTLREGARLLLQQAIENEVNEYLESMKSRRDFEGRKQFVRNGYLPEREVQTGIGPISVKQPRIRNREESSEGYSSAIL
PKYLRRAPSLEAVIPALYLKGISTNNFQEALEAIMGKDAKGLSAANITRLKQSWDQEYKDWNKRSLEGKRYAYIWVDGIYFNVRLKDDRICFLVILGALP
NGKKELIAIHNGYRESKISWTEVLENLKRRGLCTPPELAIGDGALGFWSAIEEVFPKTKQQRCWVHKTANVLDKMPKSVQVNAKKAIHEIYMASTKEDGL
AAFETFLKTYRDKYPKACACLEKDKAQLFTFYNFPAIHWQHIRTTNPIESTFATIRHRTRQTKGCGSVTATLTMVFKLATSAEKKWRKLKGCEMIEKVIK
GVIFKNGEEVMDKEKIA
PKYLRRAPSLEAVIPALYLKGISTNNFQEALEAIMGKDAKGLSAANITRLKQSWDQEYKDWNKRSLEGKRYAYIWVDGIYFNVRLKDDRICFLVILGALP
NGKKELIAIHNGYRESKISWTEVLENLKRRGLCTPPELAIGDGALGFWSAIEEVFPKTKQQRCWVHKTANVLDKMPKSVQVNAKKAIHEIYMASTKEDGL
AAFETFLKTYRDKYPKACACLEKDKAQLFTFYNFPAIHWQHIRTTNPIESTFATIRHRTRQTKGCGSVTATLTMVFKLATSAEKKWRKLKGCEMIEKVIK
GVIFKNGEEVMDKEKIA
Blast result :
Comments
ISWch1 is 79% aa similar to ISPaac1.
References