ISWch1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_014225 ND Waddlia chondrophila
Waddlia chondrophila 2032/99
Waddlia chondrophila WSU 86-1044
DNA section
IS Length : 1399 bp

Ends


IR Length : 21/24

IRL : GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAA
IRR : GAGATATTTTCAAATGTTGTGTTTCGAATCCTTAAGCGCACCCTAATTTA

Insertion site


Left flankDirect repeatRight flankDR Length
CAACTGCTGCCAGACTTGTTTCGTGACTCTAGGTTTGATTT0
AAACTCTCAGAGAGGAAAATAAAGATTTTCTTGATGAATA0
TTGCGAATTCTTCTTGGTAACTTCAGGTGATGGGGTTGCC0
AGCGCCAAGCAACTTCGCCTTGGGGTAGCACCATCTTCTT0
AACATTTCGGAACCTTCAGACTTTACTTGCGAAGCGATCG0
AAGGATATCTTCATTTCCTCTTTCCTCCGATCCTCACATT0
TATCTAATCTTGCCCACGCAGTTCTTGGCAGCCAAA ATCT0
ATTTAATTGAATTTTAGGAAATTTTAGACTATCTGAGAAA0

DNA sequence

GAGATATGATCAAAAGTTGTGTTTGAGATAAAAAGAGCGTACCCTATGAAATTTTAGAATCAAAAAAATTTATAGGAGATACGCTCATGAAGAATGATGT
CATTTCTTTGGATAAATTTCACGCAACAAGTGAAATGAACAGCTTGCTGGAACAAACATTGAGGGAAGGAGCTCGCCTGTTGCTTCAACAGGCTATTGAA
AATGAAGTCAATGAATACCTGGAATCGATGAAAAGCAGGAGGGATTTCGAGGGAAGAAAACAATTTGTCCGCAACGGCTACCTCCCTGAAAGAGAAGTAC
AAACAGGAATCGGACCGATATCAGTGAAGCAACCTAGAATTCGAAACAGAGAAGAGAGCTCTGAAGGGTACTCAAGCGCAATTCTTCCGAAATATCTAAG
GAGGGTGCCATCTCTTGATGCGGTGATTCCAGCTCTTTACCTCAGGGGGATTTCTACAAGCAATTTCCAGGATGCACTTGAAGCGATCATGGGCAAGGAT
GCGAAAGGATTATCCGCAGCTAACATCACTCGTTTAAAACAATCTTGGGAGCAGGAATACAAAGACTGGAACAAGCGCTCTCTTGAAGGAAAGCGCTACG
CTTACATCTGGGTAGATGGGATCTATTTCAATGTTCGTCTTGGAGATGACCGAATTTGCTTTCTCGTGATTCTTGGCGCTCTTCCTAATGGTAAAAAGGA
ACTTGTGGCGATCCACAATGGTTATAGAGAGAGCAAAATTTCCTGGACAGAGGTATTGGAGAGTTTGAAGCGGCGCGGGCTGTGTACAGCTCCTGAGCTT
GCGATAGGAGATGGTGCGCTTGGATTTTGGTCGGCAATAGAGGAAGTTTTTCCGAAGACAAAGCAGCAGCGGTGTTGGGTGCATAAAACGGCCAATGTGC
TGGATAAAATGCCCAAAAGTATTCAAGTGAATGCGAAAAAGGCCATTCATGAAATTTATATGGCCCCTACCAAAGAAGATGGACTGGCGGCGTTTGAGGT
GTTTTTAAAAACATACCGAGACAAATACCCCAAAGCCTGTGCTTGTCTTGAGAAGGATAAGGCGCAACTGTTTACCTTCTACAATTTTCCGGCGATCCAT
TGGCAGCACGTCAGGACAACTAACCCGATTGAATCGACTTTTGCAACAATAAGACACCGGACAAGGCAAACCAAAGGCTGCGGTTCAGTGGCTGCCACTT
TGACAATGGTATTCAAGCTGGCTACTACAGCCGAGAAAAAATGGAGAAAACTCAAAGGTTGTGAAATGATTGAAAAAGTAATCAACGGAGTGGTCTTTAA
AGATGGAGAAGAGGTTCTGGAAAAAGAAAAAGTAGCTTAAAAGAATTTTTAAATTAGGGTGCGCTTAAGGATTCGAAACACAACATTTGAAAATATCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa871340+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKNDVISLDKFHATSEMNSLLEQTLREGARLLLQQAIENEVNEYLESMKSRRDFEGRKQFVRNGYLPEREVQTGIGPISVKQPRIRNREESSEGYSSAIL
PKYLRRAPSLEAVIPALYLKGISTNNFQEALEAIMGKDAKGLSAANITRLKQSWDQEYKDWNKRSLEGKRYAYIWVDGIYFNVRLKDDRICFLVILGALP
NGKKELIAIHNGYRESKISWTEVLENLKRRGLCTPPELAIGDGALGFWSAIEEVFPKTKQQRCWVHKTANVLDKMPKSVQVNAKKAIHEIYMASTKEDGL
AAFETFLKTYRDKYPKACACLEKDKAQLFTFYNFPAIHWQHIRTTNPIESTFATIRHRTRQTKGCGSVTATLTMVFKLATSAEKKWRKLKGCEMIEKVIK
GVIFKNGEEVMDKEKIA

 

Blast result :
Comments
ISWch1 is 79% aa similar to ISPaac1.
References