ISHvo5

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001957 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV1
DNA section
IS Length : 1001 bp

Ends


IR Length : 21/25

IRL : CGCTCTTCTGTAGGAGATTGTTGATAGAGTTCAGCTGTTGCTCTGGAATC
IRR : CGCTCATGTGTAGCACATTGTTGATTTCAGAGAGTTGCTTTGACAGCGTG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTGGTAGAATTCTTCGTTA0
TATAAACAATAACGAACAAT0

DNA sequence

CGCTCTTCTGTAGGAGATTGTTGATAGAGTTCAGCTGTTGCTCTGGAATCGAAGAGGGCAAGGGCACCGCGCTAGCGGTGTCCGACACGAATGATTCCGC
TGGATGTGTTTGGCTCGGAATCGCTCGCAGCGGACCTGCTCCAACAGGTTCGCTGGCGTGACGGCGTCGAATGCCCCCGCTGCCGTTCTGACCGGACGGT
CAGAAACGGCAGCTATGGGGCGTTTCAACGCTATCTCTGTAAGAATTGTGACCGCACGTTCAACGACAAGACGGGCACAATTTTCGCTCACTCGAAGGTT
GCGCTCCGCAAGTGGTTGTTCTCGATTTACGCGTTCTTGCGGTTCAACACGAGTCTTCGCCAACTTCAGCGAGAGATTGGTGTGACCTACAAGACGATGC
ATCGTCGCGTCGAGCGCTTCACCAGAGCGCTCGACGCGCCTCGCCTCGACCTCGTTGGACCAGTCGAAATCGACGAAGTGTACGTCTCTGCCGGGTTGAA
AGGCCGCGAGCGCGACTCTTGGTCGCGCTCGCGTGGCCTGTCCACGCGCGGGCGAGGTTCGTACGAGGGAGACAAACCACCGGTCTTCACCATCGTTGAC
CGTGGAACGGGACAGCGGTACGCCGTCCCAGCGAAATCCGCTGACGAATCGACCGTGCGACTCCTGCTGGCTGACCACAAGGAGGAGTCGCTGACCATCT
ACACTGACGGATTTCGGGCATACGACCCACTTGAGGACGACAACGAATTCACCCGCGAATACGTCGTCCACGGTGACGGCGAGTACGCTGATGGAGACGT
TCACGTCAACAGCTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCGAAGGACAAGTTGACACAGTATCTTCGCGCC
TTCCAGTTACGTAGCGAACTCTTCAGAAAACCCGGTCGAGAAGCACTCAAACACGCTGTCAAAGCAACTCTCTGAAATCAACAATGTGCTACACATGAGC
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa91975+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIPLDVFGSESLAADLLQQVRWRDGVECPRCRSDRTVRNGSYGAFQRYLCKNCDRTFNDKTGTIFAHSKVALRKWLFSIYAFLRFNTSLRQLQREIGVTY
KTMHRRVERFTRALDAPRLDLVGPVEIDEVYVSAGLKGRERDSWSRSRGLSTRGRGSYEGDKPPVFTIVDRGTGQRYAVPAKSADESTVRLLLADHKEES
LTIYTDGFRAYDPLEDDNEFTREYVVHGDGEYADGDVHVNSCESHASLARRWLSPHRGVSKDKLTQYLRAFQLRSELFRKPGREALKHAVKATL

 

Blast result :
Comments
ISHvo5 is 92% aa similar to ISHma4. IS_pep_1 is HVO_C0064.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605