ISHvo5
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001957 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV1 |
DNA section
IS Length : 1001 bp
Ends
IR Length : 21/25
IRL : CGCTCTTCTGTAGGAGATTGTTGATAGAGTTCAGCTGTTGCTCTGGAATC
IRR : CGCTCATGTGTAGCACATTGTTGATTTCAGAGAGTTGCTTTGACAGCGTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTGGTAGAA | TTCTTCGTTA | 0 | |
TATAAACAAT | AACGAACAAT | 0 |
DNA sequence
CGCTCTTCTGTAGGAGATTGTTGATAGAGTTCAGCTGTTGCTCTGGAATCGAAGAGGGCAAGGGCACCGCGCTAGCGGTGTCCGACACGAATGATTCCGC
TGGATGTGTTTGGCTCGGAATCGCTCGCAGCGGACCTGCTCCAACAGGTTCGCTGGCGTGACGGCGTCGAATGCCCCCGCTGCCGTTCTGACCGGACGGT
CAGAAACGGCAGCTATGGGGCGTTTCAACGCTATCTCTGTAAGAATTGTGACCGCACGTTCAACGACAAGACGGGCACAATTTTCGCTCACTCGAAGGTT
GCGCTCCGCAAGTGGTTGTTCTCGATTTACGCGTTCTTGCGGTTCAACACGAGTCTTCGCCAACTTCAGCGAGAGATTGGTGTGACCTACAAGACGATGC
ATCGTCGCGTCGAGCGCTTCACCAGAGCGCTCGACGCGCCTCGCCTCGACCTCGTTGGACCAGTCGAAATCGACGAAGTGTACGTCTCTGCCGGGTTGAA
AGGCCGCGAGCGCGACTCTTGGTCGCGCTCGCGTGGCCTGTCCACGCGCGGGCGAGGTTCGTACGAGGGAGACAAACCACCGGTCTTCACCATCGTTGAC
CGTGGAACGGGACAGCGGTACGCCGTCCCAGCGAAATCCGCTGACGAATCGACCGTGCGACTCCTGCTGGCTGACCACAAGGAGGAGTCGCTGACCATCT
ACACTGACGGATTTCGGGCATACGACCCACTTGAGGACGACAACGAATTCACCCGCGAATACGTCGTCCACGGTGACGGCGAGTACGCTGATGGAGACGT
TCACGTCAACAGCTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCGAAGGACAAGTTGACACAGTATCTTCGCGCC
TTCCAGTTACGTAGCGAACTCTTCAGAAAACCCGGTCGAGAAGCACTCAAACACGCTGTCAAAGCAACTCTCTGAAATCAACAATGTGCTACACATGAGC
G
TGGATGTGTTTGGCTCGGAATCGCTCGCAGCGGACCTGCTCCAACAGGTTCGCTGGCGTGACGGCGTCGAATGCCCCCGCTGCCGTTCTGACCGGACGGT
CAGAAACGGCAGCTATGGGGCGTTTCAACGCTATCTCTGTAAGAATTGTGACCGCACGTTCAACGACAAGACGGGCACAATTTTCGCTCACTCGAAGGTT
GCGCTCCGCAAGTGGTTGTTCTCGATTTACGCGTTCTTGCGGTTCAACACGAGTCTTCGCCAACTTCAGCGAGAGATTGGTGTGACCTACAAGACGATGC
ATCGTCGCGTCGAGCGCTTCACCAGAGCGCTCGACGCGCCTCGCCTCGACCTCGTTGGACCAGTCGAAATCGACGAAGTGTACGTCTCTGCCGGGTTGAA
AGGCCGCGAGCGCGACTCTTGGTCGCGCTCGCGTGGCCTGTCCACGCGCGGGCGAGGTTCGTACGAGGGAGACAAACCACCGGTCTTCACCATCGTTGAC
CGTGGAACGGGACAGCGGTACGCCGTCCCAGCGAAATCCGCTGACGAATCGACCGTGCGACTCCTGCTGGCTGACCACAAGGAGGAGTCGCTGACCATCT
ACACTGACGGATTTCGGGCATACGACCCACTTGAGGACGACAACGAATTCACCCGCGAATACGTCGTCCACGGTGACGGCGAGTACGCTGATGGAGACGT
TCACGTCAACAGCTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCGAAGGACAAGTTGACACAGTATCTTCGCGCC
TTCCAGTTACGTAGCGAACTCTTCAGAAAACCCGGTCGAGAAGCACTCAAACACGCTGTCAAAGCAACTCTCTGAAATCAACAATGTGCTACACATGAGC
G
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 91 | 975 | + | No |
Chemistry : DDE
ORF sequence :
MIPLDVFGSESLAADLLQQVRWRDGVECPRCRSDRTVRNGSYGAFQRYLCKNCDRTFNDKTGTIFAHSKVALRKWLFSIYAFLRFNTSLRQLQREIGVTY
KTMHRRVERFTRALDAPRLDLVGPVEIDEVYVSAGLKGRERDSWSRSRGLSTRGRGSYEGDKPPVFTIVDRGTGQRYAVPAKSADESTVRLLLADHKEES
LTIYTDGFRAYDPLEDDNEFTREYVVHGDGEYADGDVHVNSCESHASLARRWLSPHRGVSKDKLTQYLRAFQLRSELFRKPGREALKHAVKATL
KTMHRRVERFTRALDAPRLDLVGPVEIDEVYVSAGLKGRERDSWSRSRGLSTRGRGSYEGDKPPVFTIVDRGTGQRYAVPAKSADESTVRLLLADHKEES
LTIYTDGFRAYDPLEDDNEFTREYVVHGDGEYADGDVHVNSCESHASLARRWLSPHRGVSKDKLTQYLRAFQLRSELFRKPGREALKHAVKATL
Blast result :
Comments
ISHvo5 is 92% aa similar to ISHma4. IS_pep_1 is HVO_C0064.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605