ISHvo6

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001955 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV4
Haloferax volcanii DS2 plasmid pHV1
Haloferax mediterranei ATCC 33500 plasmid pHM500
Haloferax mediterranei ATCC 33500
DNA section
IS Length : 1047 bp

Ends


IR Length : 28/34

IRL : CGCTCTTATGTAGAGCTGAGGAACGACCGTGTAGTTACGGTGAACGAGCC
IRR : CGCTCTTATGTAGAACTGTGGAGTGACCCCGTAGCAAGGCAATCGACGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTGTTGGTTAAACCTACCGTCTACTCAA8
ATTCAGACGTAGGAATCGAG0
CTCTGTACGAGCCAGAGTTAACCAACAG8
CGTCGCATCAAAAAAAGAAGTCTGACGA8
CAACCCGATATCGATCTATTCCTAACTC8
ATAGGTAATAACCAACATAGTTGCTCCA8

DNA sequence

CGCTCTTATGTAGAGCTGAGGAACGACCGTGTAGTTACGGTGAACGAGCCGAAATCATGAGGTTATGTCTCAGACTCAGCCAGCGTTCGGTGGAATGCTT
CGCCAGCTCGTTGATCTTGGATTGTTCGAGTTGGACACCGAGCCGCTCGATGCCCTCATCGAGCGGCGACTCAAGCAGTTCTGGGAGTATACCACGTGTC
CTCGCTGCGGCCACCCCAGCATTCACACGTGGGACTCGTCCGACCGCGTTATCTGCCGAGATTGCAATTTTAAACCGGTCTACACCTATGGCACGCCCTT
CCACGAGAAGCACCTCACCACCGGAGAGGTGCTTCTCGCGTACCTCCTCTATGCAGACACGTTGCTCAGTATCTCACAAATCGCGGTTGTGCTCGACAGG
GCGTACAAGACCGTCTATTACGCCATTCGAGAGGTGGAAGCCGCGGTCACGCGCGGCTTCCCCCTCGTCTGGGAGCAATTCCAACACTCCATCTCGGGCC
CAACACAAATCGACGAATCAAGCACGGTCTGTTCAGGCTACAAAGGCCAAGACCCGCCGCGGACCAGTCGGTACCGCGGCGGGTCGTCCCGATCGGGGCG
CTCACGATGGAAGGGCCGTCACGGAGACCAGATAACGCTCGTCGCGGCGTGCCGCGACGTGCTTCGGGTGATTCGCGGTCACCTTGGAATCAGCTACCAG
GGAGACCTCGAACCGGTACTGCAAGAGGCTGAAGACCTCTCCCAGCGGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTATCGAGAGATGGAGTACG
ATCACCGAACCGTTATCCACGACGAACGGTACGTTTCGGCCGACGGCGTCCACATCAACCAGGTCGAGTGCCTCTTCTCACTAGTCAAACCGTGGCTGCG
GAAGTTTCGCGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGTATCGTTCGCTCATTGAACTTGGTCGGCGCATCCCTCGAAATCGTC
GTCGATTGCCTTGCTACGGGGTCACTCCACAGTTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
978 bp325 aa651042+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQTQPAFGGMLRQLVDLGLFELDTEPLDALIERRLKQFWEYTTCPRCGHPSIHTWDSSDRVICRDCNFKPVYTYGTPFHEKHLTTGEVLLAYLLYADTL
LSISQIAVVLDRAYKTVYYAIREVEAAVTRGFPLVWEQFQHSISGPTQIDESSTVCSGYKGQDPPRTSRYRGGSSRSGRSRWKGRHGDQITLVAACRDVL
RVIRGHLGISYQGDLEPVLQEAEDLSQRLGEVWTDGLQAYREMEYDHRTVIHDERYVSADGVHINQVECLFSLVKPWLRKFRGLSKQGLEQAAHTFGIVR
SLNLVGASLEIVVDCLATGSLHSST

 

Blast result :
Comments
ISHvo6 is 44% aa similar to ISHwa6. IS_pep_1 is HVO_A0062.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605