ISHvo6
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001955 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV4 Haloferax volcanii DS2 plasmid pHV1 Haloferax mediterranei ATCC 33500 plasmid pHM500 Haloferax mediterranei ATCC 33500 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 28/34
IRL : CGCTCTTATGTAGAGCTGAGGAACGACCGTGTAGTTACGGTGAACGAGCC
IRR : CGCTCTTATGTAGAACTGTGGAGTGACCCCGTAGCAAGGCAATCGACGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGTTGGTTA | AACCTACC | GTCTACTCAA | 8 |
ATTCAGACGT | AGGAATCGAG | 0 | |
CTCTGTACGA | GCCAGAGT | TAACCAACAG | 8 |
CGTCGCATCA | AAAAAAGA | AGTCTGACGA | 8 |
CAACCCGATA | TCGATCTA | TTCCTAACTC | 8 |
ATAGGTAATA | ACCAACAT | AGTTGCTCCA | 8 |
DNA sequence
CGCTCTTATGTAGAGCTGAGGAACGACCGTGTAGTTACGGTGAACGAGCCGAAATCATGAGGTTATGTCTCAGACTCAGCCAGCGTTCGGTGGAATGCTT
CGCCAGCTCGTTGATCTTGGATTGTTCGAGTTGGACACCGAGCCGCTCGATGCCCTCATCGAGCGGCGACTCAAGCAGTTCTGGGAGTATACCACGTGTC
CTCGCTGCGGCCACCCCAGCATTCACACGTGGGACTCGTCCGACCGCGTTATCTGCCGAGATTGCAATTTTAAACCGGTCTACACCTATGGCACGCCCTT
CCACGAGAAGCACCTCACCACCGGAGAGGTGCTTCTCGCGTACCTCCTCTATGCAGACACGTTGCTCAGTATCTCACAAATCGCGGTTGTGCTCGACAGG
GCGTACAAGACCGTCTATTACGCCATTCGAGAGGTGGAAGCCGCGGTCACGCGCGGCTTCCCCCTCGTCTGGGAGCAATTCCAACACTCCATCTCGGGCC
CAACACAAATCGACGAATCAAGCACGGTCTGTTCAGGCTACAAAGGCCAAGACCCGCCGCGGACCAGTCGGTACCGCGGCGGGTCGTCCCGATCGGGGCG
CTCACGATGGAAGGGCCGTCACGGAGACCAGATAACGCTCGTCGCGGCGTGCCGCGACGTGCTTCGGGTGATTCGCGGTCACCTTGGAATCAGCTACCAG
GGAGACCTCGAACCGGTACTGCAAGAGGCTGAAGACCTCTCCCAGCGGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTATCGAGAGATGGAGTACG
ATCACCGAACCGTTATCCACGACGAACGGTACGTTTCGGCCGACGGCGTCCACATCAACCAGGTCGAGTGCCTCTTCTCACTAGTCAAACCGTGGCTGCG
GAAGTTTCGCGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGTATCGTTCGCTCATTGAACTTGGTCGGCGCATCCCTCGAAATCGTC
GTCGATTGCCTTGCTACGGGGTCACTCCACAGTTCTACATAAGAGCG
CGCCAGCTCGTTGATCTTGGATTGTTCGAGTTGGACACCGAGCCGCTCGATGCCCTCATCGAGCGGCGACTCAAGCAGTTCTGGGAGTATACCACGTGTC
CTCGCTGCGGCCACCCCAGCATTCACACGTGGGACTCGTCCGACCGCGTTATCTGCCGAGATTGCAATTTTAAACCGGTCTACACCTATGGCACGCCCTT
CCACGAGAAGCACCTCACCACCGGAGAGGTGCTTCTCGCGTACCTCCTCTATGCAGACACGTTGCTCAGTATCTCACAAATCGCGGTTGTGCTCGACAGG
GCGTACAAGACCGTCTATTACGCCATTCGAGAGGTGGAAGCCGCGGTCACGCGCGGCTTCCCCCTCGTCTGGGAGCAATTCCAACACTCCATCTCGGGCC
CAACACAAATCGACGAATCAAGCACGGTCTGTTCAGGCTACAAAGGCCAAGACCCGCCGCGGACCAGTCGGTACCGCGGCGGGTCGTCCCGATCGGGGCG
CTCACGATGGAAGGGCCGTCACGGAGACCAGATAACGCTCGTCGCGGCGTGCCGCGACGTGCTTCGGGTGATTCGCGGTCACCTTGGAATCAGCTACCAG
GGAGACCTCGAACCGGTACTGCAAGAGGCTGAAGACCTCTCCCAGCGGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCGTATCGAGAGATGGAGTACG
ATCACCGAACCGTTATCCACGACGAACGGTACGTTTCGGCCGACGGCGTCCACATCAACCAGGTCGAGTGCCTCTTCTCACTAGTCAAACCGTGGCTGCG
GAAGTTTCGCGGCCTGTCCAAGCAGGGCTTGGAACAGGCCGCTCACACCTTCGGTATCGTTCGCTCATTGAACTTGGTCGGCGCATCCCTCGAAATCGTC
GTCGATTGCCTTGCTACGGGGTCACTCCACAGTTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
978 bp | 325 aa | 65 | 1042 | + | No |
Chemistry : DDE
ORF sequence :
MSQTQPAFGGMLRQLVDLGLFELDTEPLDALIERRLKQFWEYTTCPRCGHPSIHTWDSSDRVICRDCNFKPVYTYGTPFHEKHLTTGEVLLAYLLYADTL
LSISQIAVVLDRAYKTVYYAIREVEAAVTRGFPLVWEQFQHSISGPTQIDESSTVCSGYKGQDPPRTSRYRGGSSRSGRSRWKGRHGDQITLVAACRDVL
RVIRGHLGISYQGDLEPVLQEAEDLSQRLGEVWTDGLQAYREMEYDHRTVIHDERYVSADGVHINQVECLFSLVKPWLRKFRGLSKQGLEQAAHTFGIVR
SLNLVGASLEIVVDCLATGSLHSST
LSISQIAVVLDRAYKTVYYAIREVEAAVTRGFPLVWEQFQHSISGPTQIDESSTVCSGYKGQDPPRTSRYRGGSSRSGRSRWKGRHGDQITLVAACRDVL
RVIRGHLGISYQGDLEPVLQEAEDLSQRLGEVWTDGLQAYREMEYDHRTVIHDERYVSADGVHINQVECLFSLVKPWLRKFRGLSKQGLEQAAHTFGIVR
SLNLVGASLEIVVDCLATGSLHSST
Blast result :
Comments
ISHvo6 is 44% aa similar to ISHwa6. IS_pep_1 is HVO_A0062.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605