ISPeth3

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009454 ND Pelotomaculum thermopropionicum
Pelotomaculum thermopropionicum SI
DNA section
IS Length : 1584 bp

Ends


IR Length : 20/27

IRL : AGTTAAGTCCGTATAATTGTGTAAAATCGGTTTCCTGAAAAATGGTGGGA
IRR : GATCAAGTCCTAATTCTTGTGTAAAATTCCTCAGTCAGAAAAAGACTGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAGATATATTCCTGAAACATGGCCGGT8
TTACCTCCATAACAGCAGGAATAAAATC8
GCTAGCTATTTCCTTGCGCGTATAGATT8
ATAGATCCGTGTTTTATAGATCCGCCCA8

DNA sequence

AGTTAAGTCCGTATAATTGTGTAAAATCGGTTTCCTGAAAAATGGTGGGAGCCATTTACAAATTCCTCAGTTAGAATAGAAGTTGGACAAACAAACATTC
TAAGAGGAGGAATTTGCATGGCTCAATATCAGATTACCGTAAATCAGGAACTTTTGCACCAACTATTTTTAAGTAATAACAAAGATTCCGGTATAGCAGC
CCTGCTGGAATCCGTATTGAACCAGATTTTACAGGCTCAAGCCACCGAGCAGCTTCAAGCCGGGCCATACGAACGCACCGATGAAAGAAAGGGATATCGC
AACGGCACATACCCGCACCAACTGACAACCCGGGTAGGAACCATAACCTTAAGAGTACCGCGTTTCCGCAACGGTCAGTTTTCCACCGAAATGTTCGCCC
GGTACCAGCGCAGCGAACAGGCCCTGGTGCTGACCCTGATGGAAATGGTAATCAACGGGGTCTCTACCCGAAAAATCAGCCAGATCACAGAAGAACTGTG
TGGCGCCGAATTTTCCAAGTCCACTGTCTCAGACTTATGCAAGAAACTGGACCCGCTGGTTATCTCTTGGAATAACCGGGACTTGCGGGAAATGCGCTAC
CCTTTTATATTGGTAGACGCTTTGGTGCTCAAAGTTCGTGAAGATGGGCGCGTCCGCTCCCGGGGTGTCATGATCGCCATCGGCCTAAACACCGAAGGAT
ACCGGGAAGTTTTAGGCATTATGCTTGGCGACAGTGAATCCGAAGCCAGTTGGAGCGAATTTTTCTCTTGGCTTAAAAACCGTAACCTGCGCGGTGTCGA
CCTGGTAGTGTCAGATGACCATAGCGGTTTGGTAAAGGCTGTTCGCAATCACTTCCAGGGAGTTACCTGGCAACGCTGCCAGACCCACTTTATGCGTAAT
ATCATGGACTCTGCGCCCAAATCTGTAAAGGAAGAACTTTACCCGCGCTTGAGGGCCATTTTGGATGCTCCGGATATCGGCAGCGCCCGGCTATTATTGA
ACCAAACCCTGGAGGCATTTGAGAAAAAGGCGCCTAGGGCCATGCGGGTACTTGAAATGGGCTTTGATGATGCTACGGCAGTGCTTGTACTACCGGAAAA
ATATCGCCTCCGGCTGCGCACTACAAACGGTGTTGAGCGCCTGATCGAAGAAGTCCGGCGCCGGGAACGTGTCATTCGCATTTTCCCGAACAGAGAATCG
GTAGTTCGTTTAATCGGAGCTTTACTCATGGAAATCGACGACAAGTGGGCAGCCGGTAAAAAGTATCTAGATATGGCCGAGTATCTTCAGTGGCAAAAGG
AACAAAAACATGACCGTCATCAAAACAATGTTGCTTATATCCGGTAAAATCTAAAATGGCAATATGGTTTTACTTTTGAACGTCGCTTGTTAATCAATCC
CAGCAATGTCAGTCGGCTGTCGCTGTCATATGTCTGCGTAGCGAAGACTAATCCTTTAACTTCGGCTTATGCCTGGCGGCGAAATGGATAATTTTAGCTG
CGGTGTTCAAATGAGTAATGTTATTCTTAACTATGTCAGTCTTTTTCTGACTGAGGAATTTTACACAAGAATTAGGACTTGATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1230 bp409 aa1181347+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQYQITVNQELLHQLFLSNNKDSGIAALLESVLNQILQAQATEQLQAGPYERTDERKGYRNGTYPHQLTTRVGTITLRVPRFRNGQFSTEMFARYQRSE
QALVLTLMEMVINGVSTRKISQITEELCGAEFSKSTVSDLCKKLDPLVISWNNRDLREMRYPFILVDALVLKVREDGRVRSRGVMIAIGLNTEGYREVLG
IMLGDSESEASWSEFFSWLKNRNLRGVDLVVSDDHSGLVKAVRNHFQGVTWQRCQTHFMRNIMDSAPKSVKEELYPRLRAILDAPDIGSARLLLNQTLEA
FEKKAPRAMRVLEMGFDDATAVLVLPEKYRLRLRTTNGVERLIEEVRRRERVIRIFPNRESVVRLIGALLMEIDDKWAAGKKYLDMAEYLQWQKEQKHDR
HQNNVAYIR

 

Blast result :
Comments
ISPeth3 is 66% aa similar to ISCARN59.
References