ISPeth3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009454 | ND | Pelotomaculum thermopropionicum | Pelotomaculum thermopropionicum SI |
DNA section
IS Length : 1584 bp
Ends
IR Length : 20/27
IRL : AGTTAAGTCCGTATAATTGTGTAAAATCGGTTTCCTGAAAAATGGTGGGA
IRR : GATCAAGTCCTAATTCTTGTGTAAAATTCCTCAGTCAGAAAAAGACTGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAGATATAT | TCCTGAAA | CATGGCCGGT | 8 |
TTACCTCCAT | AACAGCAG | GAATAAAATC | 8 |
GCTAGCTATT | TCCTTGCG | CGTATAGATT | 8 |
ATAGATCCGT | GTTTTATA | GATCCGCCCA | 8 |
DNA sequence
AGTTAAGTCCGTATAATTGTGTAAAATCGGTTTCCTGAAAAATGGTGGGAGCCATTTACAAATTCCTCAGTTAGAATAGAAGTTGGACAAACAAACATTC
TAAGAGGAGGAATTTGCATGGCTCAATATCAGATTACCGTAAATCAGGAACTTTTGCACCAACTATTTTTAAGTAATAACAAAGATTCCGGTATAGCAGC
CCTGCTGGAATCCGTATTGAACCAGATTTTACAGGCTCAAGCCACCGAGCAGCTTCAAGCCGGGCCATACGAACGCACCGATGAAAGAAAGGGATATCGC
AACGGCACATACCCGCACCAACTGACAACCCGGGTAGGAACCATAACCTTAAGAGTACCGCGTTTCCGCAACGGTCAGTTTTCCACCGAAATGTTCGCCC
GGTACCAGCGCAGCGAACAGGCCCTGGTGCTGACCCTGATGGAAATGGTAATCAACGGGGTCTCTACCCGAAAAATCAGCCAGATCACAGAAGAACTGTG
TGGCGCCGAATTTTCCAAGTCCACTGTCTCAGACTTATGCAAGAAACTGGACCCGCTGGTTATCTCTTGGAATAACCGGGACTTGCGGGAAATGCGCTAC
CCTTTTATATTGGTAGACGCTTTGGTGCTCAAAGTTCGTGAAGATGGGCGCGTCCGCTCCCGGGGTGTCATGATCGCCATCGGCCTAAACACCGAAGGAT
ACCGGGAAGTTTTAGGCATTATGCTTGGCGACAGTGAATCCGAAGCCAGTTGGAGCGAATTTTTCTCTTGGCTTAAAAACCGTAACCTGCGCGGTGTCGA
CCTGGTAGTGTCAGATGACCATAGCGGTTTGGTAAAGGCTGTTCGCAATCACTTCCAGGGAGTTACCTGGCAACGCTGCCAGACCCACTTTATGCGTAAT
ATCATGGACTCTGCGCCCAAATCTGTAAAGGAAGAACTTTACCCGCGCTTGAGGGCCATTTTGGATGCTCCGGATATCGGCAGCGCCCGGCTATTATTGA
ACCAAACCCTGGAGGCATTTGAGAAAAAGGCGCCTAGGGCCATGCGGGTACTTGAAATGGGCTTTGATGATGCTACGGCAGTGCTTGTACTACCGGAAAA
ATATCGCCTCCGGCTGCGCACTACAAACGGTGTTGAGCGCCTGATCGAAGAAGTCCGGCGCCGGGAACGTGTCATTCGCATTTTCCCGAACAGAGAATCG
GTAGTTCGTTTAATCGGAGCTTTACTCATGGAAATCGACGACAAGTGGGCAGCCGGTAAAAAGTATCTAGATATGGCCGAGTATCTTCAGTGGCAAAAGG
AACAAAAACATGACCGTCATCAAAACAATGTTGCTTATATCCGGTAAAATCTAAAATGGCAATATGGTTTTACTTTTGAACGTCGCTTGTTAATCAATCC
CAGCAATGTCAGTCGGCTGTCGCTGTCATATGTCTGCGTAGCGAAGACTAATCCTTTAACTTCGGCTTATGCCTGGCGGCGAAATGGATAATTTTAGCTG
CGGTGTTCAAATGAGTAATGTTATTCTTAACTATGTCAGTCTTTTTCTGACTGAGGAATTTTACACAAGAATTAGGACTTGATC
TAAGAGGAGGAATTTGCATGGCTCAATATCAGATTACCGTAAATCAGGAACTTTTGCACCAACTATTTTTAAGTAATAACAAAGATTCCGGTATAGCAGC
CCTGCTGGAATCCGTATTGAACCAGATTTTACAGGCTCAAGCCACCGAGCAGCTTCAAGCCGGGCCATACGAACGCACCGATGAAAGAAAGGGATATCGC
AACGGCACATACCCGCACCAACTGACAACCCGGGTAGGAACCATAACCTTAAGAGTACCGCGTTTCCGCAACGGTCAGTTTTCCACCGAAATGTTCGCCC
GGTACCAGCGCAGCGAACAGGCCCTGGTGCTGACCCTGATGGAAATGGTAATCAACGGGGTCTCTACCCGAAAAATCAGCCAGATCACAGAAGAACTGTG
TGGCGCCGAATTTTCCAAGTCCACTGTCTCAGACTTATGCAAGAAACTGGACCCGCTGGTTATCTCTTGGAATAACCGGGACTTGCGGGAAATGCGCTAC
CCTTTTATATTGGTAGACGCTTTGGTGCTCAAAGTTCGTGAAGATGGGCGCGTCCGCTCCCGGGGTGTCATGATCGCCATCGGCCTAAACACCGAAGGAT
ACCGGGAAGTTTTAGGCATTATGCTTGGCGACAGTGAATCCGAAGCCAGTTGGAGCGAATTTTTCTCTTGGCTTAAAAACCGTAACCTGCGCGGTGTCGA
CCTGGTAGTGTCAGATGACCATAGCGGTTTGGTAAAGGCTGTTCGCAATCACTTCCAGGGAGTTACCTGGCAACGCTGCCAGACCCACTTTATGCGTAAT
ATCATGGACTCTGCGCCCAAATCTGTAAAGGAAGAACTTTACCCGCGCTTGAGGGCCATTTTGGATGCTCCGGATATCGGCAGCGCCCGGCTATTATTGA
ACCAAACCCTGGAGGCATTTGAGAAAAAGGCGCCTAGGGCCATGCGGGTACTTGAAATGGGCTTTGATGATGCTACGGCAGTGCTTGTACTACCGGAAAA
ATATCGCCTCCGGCTGCGCACTACAAACGGTGTTGAGCGCCTGATCGAAGAAGTCCGGCGCCGGGAACGTGTCATTCGCATTTTCCCGAACAGAGAATCG
GTAGTTCGTTTAATCGGAGCTTTACTCATGGAAATCGACGACAAGTGGGCAGCCGGTAAAAAGTATCTAGATATGGCCGAGTATCTTCAGTGGCAAAAGG
AACAAAAACATGACCGTCATCAAAACAATGTTGCTTATATCCGGTAAAATCTAAAATGGCAATATGGTTTTACTTTTGAACGTCGCTTGTTAATCAATCC
CAGCAATGTCAGTCGGCTGTCGCTGTCATATGTCTGCGTAGCGAAGACTAATCCTTTAACTTCGGCTTATGCCTGGCGGCGAAATGGATAATTTTAGCTG
CGGTGTTCAAATGAGTAATGTTATTCTTAACTATGTCAGTCTTTTTCTGACTGAGGAATTTTACACAAGAATTAGGACTTGATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1230 bp | 409 aa | 118 | 1347 | + | No |
Chemistry : DDE
ORF sequence :
MAQYQITVNQELLHQLFLSNNKDSGIAALLESVLNQILQAQATEQLQAGPYERTDERKGYRNGTYPHQLTTRVGTITLRVPRFRNGQFSTEMFARYQRSE
QALVLTLMEMVINGVSTRKISQITEELCGAEFSKSTVSDLCKKLDPLVISWNNRDLREMRYPFILVDALVLKVREDGRVRSRGVMIAIGLNTEGYREVLG
IMLGDSESEASWSEFFSWLKNRNLRGVDLVVSDDHSGLVKAVRNHFQGVTWQRCQTHFMRNIMDSAPKSVKEELYPRLRAILDAPDIGSARLLLNQTLEA
FEKKAPRAMRVLEMGFDDATAVLVLPEKYRLRLRTTNGVERLIEEVRRRERVIRIFPNRESVVRLIGALLMEIDDKWAAGKKYLDMAEYLQWQKEQKHDR
HQNNVAYIR
QALVLTLMEMVINGVSTRKISQITEELCGAEFSKSTVSDLCKKLDPLVISWNNRDLREMRYPFILVDALVLKVREDGRVRSRGVMIAIGLNTEGYREVLG
IMLGDSESEASWSEFFSWLKNRNLRGVDLVVSDDHSGLVKAVRNHFQGVTWQRCQTHFMRNIMDSAPKSVKEELYPRLRAILDAPDIGSARLLLNQTLEA
FEKKAPRAMRVLEMGFDDATAVLVLPEKYRLRLRTTNGVERLIEEVRRRERVIRIFPNRESVVRLIGALLMEIDDKWAAGKKYLDMAEYLQWQKEQKHDR
HQNNVAYIR
Blast result :
Comments
ISPeth3 is 66% aa similar to ISCARN59.
References