ISNha9
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007964 | ND | Nitrobacter hamburgensis | Nitrobacter hamburgensis X14 |
DNA section
IS Length : 1322 bp
Ends
IR Length : 29/32
IRL : GACACTGTCAGGAATTTCGTGTGCGGGCGTGCATAATGGGTAAAAAGGAT
IRR : GGGACTGTCAGGAATTTCGTGTGCGGGCGAGCGGTTGAACATTACGCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAATGCGACCA | CATCCGCC | TGCTTGGGGT | 8 |
GCGGCCGCGG | TTGCGCCAC | CGGTCGTAG | 9 |
GTGATCCGCC | GCTCGCTG/T | TGGCCGCGG | 10 |
DNA sequence
GACACTGTCAGGAATTTCGTGTGCGGGCGTGCATAATGGGTAAAAAGGATTCCCACTATGGCCCGACGCAAAGACCCTGCGATACCAAATGATCTTCTCG
ACCAGCTTCTGGCGGGAGGCGCAGCCAGTGCAGCCTTCGAACAGGGCGGCCTGCTGGATTCGCTCAAGAAGGCTCTGACCGAGCGCGCGCTAAACGCGGA
GATGGACCATCATCTGGCGAGCGGCGAAGACGCTGGCAATACGCGTAACGGCTACGGCCGCAAGACCGTGACGACGGAGACCGGCAAGCTGGAGATCGAC
ATACCGCGCGATCGCCAGTCGAGTTTCGATCCGCAGTTGATTGCCAAGTATCAGCGCCGTTTTCCCGGCTTCGACGACAAGATCGTGTCCATGTATGCGC
GCGGCATGAGCACCCGGGAGATCACCGGGCACCTGCGCGATCTGTACGGTATCGAGGTGTCGCCGGACCTGATCTCAACGGTGACGGACGCCGTTCTCGA
CGAAGTCGCCACCTGGCAGCAAAGACCACTCGATCCGGTTTATCCGCTGATCTTCTTCGATGCGATCCGGGTCAAGATCCGCGACGAAGGGATGGTCCGC
AACAAGGCCATCCACATCGCGCTGGGGGTCCGCGCCGACGGCGCCAAGGAGGTGCTCGGCCTGTGGCTCGAGCAGAACGAAGGCGCCAAATTCTGGCTGC
GGGTGATGAACGAGCTCAAGAACCGCGGCGTCGATGATATCCTGCTGGCCGTCGTTGATGGCCTGAAGGGCTTCCCCGATGCGATCACCGCTGTGTTCCC
GGAGGCGGTCGTCCAGACGTGCATCGTCCACCTGCTGCGCAACTCCATGGACTTCGTGTCCTGGAAAGACCGCAAGGGGCTGGCGACAGCGCTCAAGGAC
ATCTACCGCGCCGTCGATGCCGATGCTGCCGAAAAGGCGCTGGCGGCGTTCGAGGCCGGCCCCTGGGGCCAGCGCTACCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTCATCCCGTTCTTTGCCTTCCCTGACGAGGTGCGTCGGATCGTCTACACAACAAACTCAATAGAAGCGCTGAACTCGAAACT
CCGGCGGGCTGTCAGGGCCAGAGGCCACTTCCCCAGCGACGACGCGGCAACCAAGCTGCTCTATCTGATCTTGAACCGATCGGAGAAAGAGTGGAAAATG
CCGCCTCGTGAGTGGACCATGGCCAAGGCCCAGTTCGCCGTCATCTTCGGCGAGCGCTTCATCAAAGCCATGGCGGCGTAATGTTCAACCGCTCGCCCGC
ACACGAAATTCCTGACAGTCCC
ACCAGCTTCTGGCGGGAGGCGCAGCCAGTGCAGCCTTCGAACAGGGCGGCCTGCTGGATTCGCTCAAGAAGGCTCTGACCGAGCGCGCGCTAAACGCGGA
GATGGACCATCATCTGGCGAGCGGCGAAGACGCTGGCAATACGCGTAACGGCTACGGCCGCAAGACCGTGACGACGGAGACCGGCAAGCTGGAGATCGAC
ATACCGCGCGATCGCCAGTCGAGTTTCGATCCGCAGTTGATTGCCAAGTATCAGCGCCGTTTTCCCGGCTTCGACGACAAGATCGTGTCCATGTATGCGC
GCGGCATGAGCACCCGGGAGATCACCGGGCACCTGCGCGATCTGTACGGTATCGAGGTGTCGCCGGACCTGATCTCAACGGTGACGGACGCCGTTCTCGA
CGAAGTCGCCACCTGGCAGCAAAGACCACTCGATCCGGTTTATCCGCTGATCTTCTTCGATGCGATCCGGGTCAAGATCCGCGACGAAGGGATGGTCCGC
AACAAGGCCATCCACATCGCGCTGGGGGTCCGCGCCGACGGCGCCAAGGAGGTGCTCGGCCTGTGGCTCGAGCAGAACGAAGGCGCCAAATTCTGGCTGC
GGGTGATGAACGAGCTCAAGAACCGCGGCGTCGATGATATCCTGCTGGCCGTCGTTGATGGCCTGAAGGGCTTCCCCGATGCGATCACCGCTGTGTTCCC
GGAGGCGGTCGTCCAGACGTGCATCGTCCACCTGCTGCGCAACTCCATGGACTTCGTGTCCTGGAAAGACCGCAAGGGGCTGGCGACAGCGCTCAAGGAC
ATCTACCGCGCCGTCGATGCCGATGCTGCCGAAAAGGCGCTGGCGGCGTTCGAGGCCGGCCCCTGGGGCCAGCGCTACCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTCATCCCGTTCTTTGCCTTCCCTGACGAGGTGCGTCGGATCGTCTACACAACAAACTCAATAGAAGCGCTGAACTCGAAACT
CCGGCGGGCTGTCAGGGCCAGAGGCCACTTCCCCAGCGACGACGCGGCAACCAAGCTGCTCTATCTGATCTTGAACCGATCGGAGAAAGAGTGGAAAATG
CCGCCTCGTGAGTGGACCATGGCCAAGGCCCAGTTCGCCGTCATCTTCGGCGAGCGCTTCATCAAAGCCATGGCGGCGTAATGTTCAACCGCTCGCCCGC
ACACGAAATTCCTGACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 58 | 1281 | + | No |
Chemistry : DDE
ORF sequence :
MARRKDPAIPNDLLDQLLAGGAASAAFEQGGLLDSLKKALTERALNAEMDHHLASGEDAGNTRNGYGRKTVTTETGKLEIDIPRDRQSSFDPQLIAKYQR
RFPGFDDKIVSMYARGMSTREITGHLRDLYGIEVSPDLISTVTDAVLDEVATWQQRPLDPVYPLIFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELKNRGVDDILLAVVDGLKGFPDAITAVFPEAVVQTCIVHLLRNSMDFVSWKDRKGLATALKDIYRAVDADAAEKALAAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIVYTTNSIEALNSKLRRAVRARGHFPSDDAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIKAMAA
RFPGFDDKIVSMYARGMSTREITGHLRDLYGIEVSPDLISTVTDAVLDEVATWQQRPLDPVYPLIFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELKNRGVDDILLAVVDGLKGFPDAITAVFPEAVVQTCIVHLLRNSMDFVSWKDRKGLATALKDIYRAVDADAAEKALAAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIVYTTNSIEALNSKLRRAVRARGHFPSDDAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIKAMAA
Blast result :
Comments
ISNha9 is 88% aa similar to ISAzs19.
References