ISNha9

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007964 ND Nitrobacter hamburgensis
Nitrobacter hamburgensis X14
DNA section
IS Length : 1322 bp

Ends


IR Length : 29/32

IRL : GACACTGTCAGGAATTTCGTGTGCGGGCGTGCATAATGGGTAAAAAGGAT
IRR : GGGACTGTCAGGAATTTCGTGTGCGGGCGAGCGGTTGAACATTACGCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
GAATGCGACCACATCCGCCTGCTTGGGGT8
GCGGCCGCGGTTGCGCCACCGGTCGTAG9
GTGATCCGCCGCTCGCTG/TTGGCCGCGG10

DNA sequence

GACACTGTCAGGAATTTCGTGTGCGGGCGTGCATAATGGGTAAAAAGGATTCCCACTATGGCCCGACGCAAAGACCCTGCGATACCAAATGATCTTCTCG
ACCAGCTTCTGGCGGGAGGCGCAGCCAGTGCAGCCTTCGAACAGGGCGGCCTGCTGGATTCGCTCAAGAAGGCTCTGACCGAGCGCGCGCTAAACGCGGA
GATGGACCATCATCTGGCGAGCGGCGAAGACGCTGGCAATACGCGTAACGGCTACGGCCGCAAGACCGTGACGACGGAGACCGGCAAGCTGGAGATCGAC
ATACCGCGCGATCGCCAGTCGAGTTTCGATCCGCAGTTGATTGCCAAGTATCAGCGCCGTTTTCCCGGCTTCGACGACAAGATCGTGTCCATGTATGCGC
GCGGCATGAGCACCCGGGAGATCACCGGGCACCTGCGCGATCTGTACGGTATCGAGGTGTCGCCGGACCTGATCTCAACGGTGACGGACGCCGTTCTCGA
CGAAGTCGCCACCTGGCAGCAAAGACCACTCGATCCGGTTTATCCGCTGATCTTCTTCGATGCGATCCGGGTCAAGATCCGCGACGAAGGGATGGTCCGC
AACAAGGCCATCCACATCGCGCTGGGGGTCCGCGCCGACGGCGCCAAGGAGGTGCTCGGCCTGTGGCTCGAGCAGAACGAAGGCGCCAAATTCTGGCTGC
GGGTGATGAACGAGCTCAAGAACCGCGGCGTCGATGATATCCTGCTGGCCGTCGTTGATGGCCTGAAGGGCTTCCCCGATGCGATCACCGCTGTGTTCCC
GGAGGCGGTCGTCCAGACGTGCATCGTCCACCTGCTGCGCAACTCCATGGACTTCGTGTCCTGGAAAGACCGCAAGGGGCTGGCGACAGCGCTCAAGGAC
ATCTACCGCGCCGTCGATGCCGATGCTGCCGAAAAGGCGCTGGCGGCGTTCGAGGCCGGCCCCTGGGGCCAGCGCTACCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTCATCCCGTTCTTTGCCTTCCCTGACGAGGTGCGTCGGATCGTCTACACAACAAACTCAATAGAAGCGCTGAACTCGAAACT
CCGGCGGGCTGTCAGGGCCAGAGGCCACTTCCCCAGCGACGACGCGGCAACCAAGCTGCTCTATCTGATCTTGAACCGATCGGAGAAAGAGTGGAAAATG
CCGCCTCGTGAGTGGACCATGGCCAAGGCCCAGTTCGCCGTCATCTTCGGCGAGCGCTTCATCAAAGCCATGGCGGCGTAATGTTCAACCGCTCGCCCGC
ACACGAAATTCCTGACAGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa581281+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARRKDPAIPNDLLDQLLAGGAASAAFEQGGLLDSLKKALTERALNAEMDHHLASGEDAGNTRNGYGRKTVTTETGKLEIDIPRDRQSSFDPQLIAKYQR
RFPGFDDKIVSMYARGMSTREITGHLRDLYGIEVSPDLISTVTDAVLDEVATWQQRPLDPVYPLIFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELKNRGVDDILLAVVDGLKGFPDAITAVFPEAVVQTCIVHLLRNSMDFVSWKDRKGLATALKDIYRAVDADAAEKALAAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIVYTTNSIEALNSKLRRAVRARGHFPSDDAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIKAMAA

 

Blast result :
Comments
ISNha9 is 88% aa similar to ISAzs19.
References