ISSpwi2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009508 ND Sphingomonas wittichii
Sphingomonas sp. XLDN2-5
Sphingomonas wittichii RW1 plasmid pSWIT02
Sphingobium chungbukense DJ77 plasmid pSY2
DNA section
IS Length : 1322 bp

Ends


IR Length : 31/32

IRL : GGGACTGTCAGGATTTCCGTGTGTGGCCGGGCATAATGGGCAACAAGGAG
IRR : GGGACTGTCAGGATTTCCGTGTGCGGCCGGGCGGTTGATCATCAGGCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGGGACCAACCCCACCACCTCAGTTT8
GCCTGTCCTTTGCGCAGGTGCGCAGGGC8
ACCTTGTCGTTCCGGGGAATATTGGCATT9

DNA sequence

GGGACTGTCAGGATTTCCGTGTGTGGCCGGGCATAATGGGCAACAAGGAGTCCCACCATGTCACGACGCAAAGAACCTGCCATACCGAATGAGCTTCTCG
ATCAGCTTTTGGCGGGTGGCGCTGCCAGTGCCGCCTTCGAGCAGGGCGGTCTGCTCGATTCGCTGAAGAAGGCGCTGACAGAGCGTGTCCTGAATGCGGA
GATGGATCACCACCTCGCTGGCGAAGACGGCGCCGGCAACATGCGCAACGGCTACGGTCGGAAGACGGTAATGACCGACACCGGCAAGTTGGCGATCGAC
GTGCCGCGCGATCGCCAGTCGAGCTTCGACCCGCAGTTGATCGCCAAGTATCAACGCCGCTTTCCCGGCTTCGACGACAAGATCGTGTCGATGTACGCGC
GCGGCATGACCACCCGCGAGATCACCAGGCACCTGCACGATCTATACGGCATCGACGTCTCTCCCGATTTGATTAGCACGGTGACGGACGCCGTGCTCGA
TGAGGTCGCCACTTGGCAGCAGCGGCCGCTCGATCCGGTTTACCCGCTGGTCTTCTTCGACGCGATCCGGGTCAAGATCCGCGACGAGGGCATGGTGCGC
AACAAGGCGATCCACATTGCGCTGGGCGTCCGCGCCGACGGCGCAAAGGAGGTGCTCGGCTTGTGGCTCGAGCAGAATGAGGGTGCCAAGTTCTGGCTTC
GGGTGATGAACGAGCTTCGCAACCGTGGCGTTGAAGACATCCTGCTGGCCGTCGTTGACGGCCTGAAGGGCTTTCCCGATGCGATCACCGCAGTGTTCCC
CGATGCGATCGTCCAGACCTGCATCGTTCACCTGCTGCGCAACTCGATGGACTTCGTCTCCTGGAAAGACCGAAAGAACCTCGCCAGCGCGCTCAAGGAG
ATCTACCGTGCCACCGACGCGGATGCCGCCGAAAAGGCGCTGACGGCATTTGAGGCTGGCCCTTGGGGGCAGCGCTATCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTGATCCCGTTTTTTGCGTTCCCCGACGAGGTCCGCCGGATCATCTACACTACGAACGCCATCGAAGCTTTGAACTCGAAGCT
CAGGCGGGCTGTCAGGGCCAGGGGACACTTCCCCAGCGATGAGGCCGCCACCAAGCTGCTCTACCTGATCTTGAATCGGTCGGAGAAAGAGTGGAAGATG
CCACCACGTGAGTGGACCATGGCGAAGGCGCAATTTGCCGTGATCTTCGGCGAACGTTTCATCAGAGCCATGGCGGCCTGATGATCAACCGCCCGGCCGC
ACACGGAAATCCTGACAGTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa581281+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRRKEPAIPNELLDQLLAGGAASAAFEQGGLLDSLKKALTERVLNAEMDHHLAGEDGAGNMRNGYGRKTVMTDTGKLAIDVPRDRQSSFDPQLIAKYQR
RFPGFDDKIVSMYARGMTTREITRHLHDLYGIDVSPDLISTVTDAVLDEVATWQQRPLDPVYPLVFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELRNRGVEDILLAVVDGLKGFPDAITAVFPDAIVQTCIVHLLRNSMDFVSWKDRKNLASALKEIYRATDADAAEKALTAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIIYTTNAIEALNSKLRRAVRARGHFPSDEAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIRAMAA

 

Blast result :
Comments
ISSpwi2 is 89% aa similar to ISAzs19.
References