ISSpwi2
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009508 | ND | Sphingomonas wittichii | Sphingomonas sp. XLDN2-5 Sphingomonas wittichii RW1 plasmid pSWIT02 Sphingobium chungbukense DJ77 plasmid pSY2 |
DNA section
IS Length : 1322 bp
Ends
IR Length : 31/32
IRL : GGGACTGTCAGGATTTCCGTGTGTGGCCGGGCATAATGGGCAACAAGGAG
IRR : GGGACTGTCAGGATTTCCGTGTGCGGCCGGGCGGTTGATCATCAGGCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGGGACCA | ACCCCACC | ACCTCAGTTT | 8 |
GCCTGTCCTT | TGCGCAGG | TGCGCAGGGC | 8 |
ACCTTGTCGT | TCCGGGGAA | TATTGGCATT | 9 |
DNA sequence
GGGACTGTCAGGATTTCCGTGTGTGGCCGGGCATAATGGGCAACAAGGAGTCCCACCATGTCACGACGCAAAGAACCTGCCATACCGAATGAGCTTCTCG
ATCAGCTTTTGGCGGGTGGCGCTGCCAGTGCCGCCTTCGAGCAGGGCGGTCTGCTCGATTCGCTGAAGAAGGCGCTGACAGAGCGTGTCCTGAATGCGGA
GATGGATCACCACCTCGCTGGCGAAGACGGCGCCGGCAACATGCGCAACGGCTACGGTCGGAAGACGGTAATGACCGACACCGGCAAGTTGGCGATCGAC
GTGCCGCGCGATCGCCAGTCGAGCTTCGACCCGCAGTTGATCGCCAAGTATCAACGCCGCTTTCCCGGCTTCGACGACAAGATCGTGTCGATGTACGCGC
GCGGCATGACCACCCGCGAGATCACCAGGCACCTGCACGATCTATACGGCATCGACGTCTCTCCCGATTTGATTAGCACGGTGACGGACGCCGTGCTCGA
TGAGGTCGCCACTTGGCAGCAGCGGCCGCTCGATCCGGTTTACCCGCTGGTCTTCTTCGACGCGATCCGGGTCAAGATCCGCGACGAGGGCATGGTGCGC
AACAAGGCGATCCACATTGCGCTGGGCGTCCGCGCCGACGGCGCAAAGGAGGTGCTCGGCTTGTGGCTCGAGCAGAATGAGGGTGCCAAGTTCTGGCTTC
GGGTGATGAACGAGCTTCGCAACCGTGGCGTTGAAGACATCCTGCTGGCCGTCGTTGACGGCCTGAAGGGCTTTCCCGATGCGATCACCGCAGTGTTCCC
CGATGCGATCGTCCAGACCTGCATCGTTCACCTGCTGCGCAACTCGATGGACTTCGTCTCCTGGAAAGACCGAAAGAACCTCGCCAGCGCGCTCAAGGAG
ATCTACCGTGCCACCGACGCGGATGCCGCCGAAAAGGCGCTGACGGCATTTGAGGCTGGCCCTTGGGGGCAGCGCTATCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTGATCCCGTTTTTTGCGTTCCCCGACGAGGTCCGCCGGATCATCTACACTACGAACGCCATCGAAGCTTTGAACTCGAAGCT
CAGGCGGGCTGTCAGGGCCAGGGGACACTTCCCCAGCGATGAGGCCGCCACCAAGCTGCTCTACCTGATCTTGAATCGGTCGGAGAAAGAGTGGAAGATG
CCACCACGTGAGTGGACCATGGCGAAGGCGCAATTTGCCGTGATCTTCGGCGAACGTTTCATCAGAGCCATGGCGGCCTGATGATCAACCGCCCGGCCGC
ACACGGAAATCCTGACAGTCCC
ATCAGCTTTTGGCGGGTGGCGCTGCCAGTGCCGCCTTCGAGCAGGGCGGTCTGCTCGATTCGCTGAAGAAGGCGCTGACAGAGCGTGTCCTGAATGCGGA
GATGGATCACCACCTCGCTGGCGAAGACGGCGCCGGCAACATGCGCAACGGCTACGGTCGGAAGACGGTAATGACCGACACCGGCAAGTTGGCGATCGAC
GTGCCGCGCGATCGCCAGTCGAGCTTCGACCCGCAGTTGATCGCCAAGTATCAACGCCGCTTTCCCGGCTTCGACGACAAGATCGTGTCGATGTACGCGC
GCGGCATGACCACCCGCGAGATCACCAGGCACCTGCACGATCTATACGGCATCGACGTCTCTCCCGATTTGATTAGCACGGTGACGGACGCCGTGCTCGA
TGAGGTCGCCACTTGGCAGCAGCGGCCGCTCGATCCGGTTTACCCGCTGGTCTTCTTCGACGCGATCCGGGTCAAGATCCGCGACGAGGGCATGGTGCGC
AACAAGGCGATCCACATTGCGCTGGGCGTCCGCGCCGACGGCGCAAAGGAGGTGCTCGGCTTGTGGCTCGAGCAGAATGAGGGTGCCAAGTTCTGGCTTC
GGGTGATGAACGAGCTTCGCAACCGTGGCGTTGAAGACATCCTGCTGGCCGTCGTTGACGGCCTGAAGGGCTTTCCCGATGCGATCACCGCAGTGTTCCC
CGATGCGATCGTCCAGACCTGCATCGTTCACCTGCTGCGCAACTCGATGGACTTCGTCTCCTGGAAAGACCGAAAGAACCTCGCCAGCGCGCTCAAGGAG
ATCTACCGTGCCACCGACGCGGATGCCGCCGAAAAGGCGCTGACGGCATTTGAGGCTGGCCCTTGGGGGCAGCGCTATCCCGCCATCGGCCAGAGCTGGC
GGCGCGCCTGGGGCGAGGTGATCCCGTTTTTTGCGTTCCCCGACGAGGTCCGCCGGATCATCTACACTACGAACGCCATCGAAGCTTTGAACTCGAAGCT
CAGGCGGGCTGTCAGGGCCAGGGGACACTTCCCCAGCGATGAGGCCGCCACCAAGCTGCTCTACCTGATCTTGAATCGGTCGGAGAAAGAGTGGAAGATG
CCACCACGTGAGTGGACCATGGCGAAGGCGCAATTTGCCGTGATCTTCGGCGAACGTTTCATCAGAGCCATGGCGGCCTGATGATCAACCGCCCGGCCGC
ACACGGAAATCCTGACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 58 | 1281 | + | No |
Chemistry : DDE
ORF sequence :
MSRRKEPAIPNELLDQLLAGGAASAAFEQGGLLDSLKKALTERVLNAEMDHHLAGEDGAGNMRNGYGRKTVMTDTGKLAIDVPRDRQSSFDPQLIAKYQR
RFPGFDDKIVSMYARGMTTREITRHLHDLYGIDVSPDLISTVTDAVLDEVATWQQRPLDPVYPLVFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELRNRGVEDILLAVVDGLKGFPDAITAVFPDAIVQTCIVHLLRNSMDFVSWKDRKNLASALKEIYRATDADAAEKALTAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIIYTTNAIEALNSKLRRAVRARGHFPSDEAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIRAMAA
RFPGFDDKIVSMYARGMTTREITRHLHDLYGIDVSPDLISTVTDAVLDEVATWQQRPLDPVYPLVFFDAIRVKIRDEGMVRNKAIHIALGVRADGAKEVL
GLWLEQNEGAKFWLRVMNELRNRGVEDILLAVVDGLKGFPDAITAVFPDAIVQTCIVHLLRNSMDFVSWKDRKNLASALKEIYRATDADAAEKALTAFEA
GPWGQRYPAIGQSWRRAWGEVIPFFAFPDEVRRIIYTTNAIEALNSKLRRAVRARGHFPSDEAATKLLYLILNRSEKEWKMPPREWTMAKAQFAVIFGER
FIRAMAA
Blast result :
Comments
ISSpwi2 is 89% aa similar to ISAzs19.
References