ISDku1
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_015573 | ND | Desulfotomaculum kuznetsovii | Desulfotomaculum kuznetsovii DSM 6115 |
DNA section
IS Length : 1486 bp
Ends
IR Length : 23/28
IRL : GAGAACGTAAAAAGTTTTGTGTAAATGGTTAAACTTAACGCAAAAGGAGA
IRR : GGGAGTGTAAATAATTTTGTGTAAATGGAAATTCCTCCGAAAAACTGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGCGCCCG | CTATAGCT | CTCATCCACC | 8 |
DNA sequence
GAGAACGTAAAAAGTTTTGTGTAAATGGTTAAACTTAACGCAAAAGGAGATGACCATTTATGCAAGACTTGAAGGACAAAACCATTAGGGAACTGGCGAA
GGGCTGCCGAACTGTCGATGATGTTCATGAGATGCTCAAGAGTTTATTCAAGGACACCATACAGCAGATACTTGAAGCTGAGATGGAAGAGCACCTTGGA
TACAAGAAACACAGCCCAGAAGGAAATAATACAGGCAACAGCCGAAACGGCTACAGTAAGAAAACCATCAAGACCAGGTTTGGCGAAACCGAAATCTCTG
TTCCTAGAGACCGTAACGGTGAATTTGAACCCAGGATTGTTAGGAAATACGAGACAACCTCCAACCAACTGGAGGAACAAATTATTGCCATGTACGCAAA
AGGTATGTCCACTCGTGATATCGAAGAACACATGCGGGACATTTACGGGATCGATATTTCGCCAACCATGGTCAGCAAGATAACCGACAAAATTCTGCCC
ATGATTTCTGAGTGGCAGTCAAGACCGTTAGAGCGGATTTACCCTGTGGTCTTTCTCGATGCTATCCACTTCAAAGTTCGCAAAGACGGCAGAATTGTTA
ATAAGGCCGCCTACAGCGTACTGGGCATCAATATGGCCGGCCAGAAAGAAGTCCTGGGCATCTGGGTTGGGGAACACGAAAGCGCCAGTTTCTGGCTCAG
TGTCTGCAATGACTTGAAAAACAGAGGCGTTCAAGACATTCTGATTGCCTGTAAAGACGGCCTTTCGGGTTTTTCCGAAGCCATTAATACGGTGTTTCCC
AAAACAGAGATCCAATTATGCGTCATTCATCAAATACGAAACTCCCTGAAATATGTGCCTTACAAAGAGCAAAAGGAGTTTATGGCTGACTTAAAGAAAG
TGTATCAGGCTTTAACAATTGAAGAAGCGGAATTGGCCTTTACCGCCTTTAAAGAAAAATGGGGCAAAAGACATCCCATCATTATAAGGTCGTGGGAAAA
CAACTGGCTCGAATTAACGGCTTACTTTAAATATCCTCACGAAATACGCCGCTTAATCTACACAACCAACGTCATTGAGGGTTATCACAGGCAGTTACGT
AAAGTAACCAAGACAAAAACAGCTTATCCGACTGATGAGGCCCTTGTTAAACTAATATACCTTGCTACCATCGAAGCATCCAAAAAATGGACAATGCCCA
TCAGAGAGTGGAAAAAATGCATGTCTCAATTTGCAATTTACTTTGAAGACAGGTTAGAATCAGAAATGGCAGTATGAACATGAGTTTATCGCTTTGGTTC
TCCCAGGGATAGAGGAAAAGAATAGGGGCAACTCTGATGAAAGTTACCCTCTATCCCCGGCAGAACCCCGCCAGGTGCTCGGGTTGCTCTCCAGCATTGC
CCTATCCTCCTGGCGAGTAAGAGCCATCTATAGGGTAACCAGTTTTTCGGAGGAATTTCCATTTACACAAAATTATTTACACTCCC
GGGCTGCCGAACTGTCGATGATGTTCATGAGATGCTCAAGAGTTTATTCAAGGACACCATACAGCAGATACTTGAAGCTGAGATGGAAGAGCACCTTGGA
TACAAGAAACACAGCCCAGAAGGAAATAATACAGGCAACAGCCGAAACGGCTACAGTAAGAAAACCATCAAGACCAGGTTTGGCGAAACCGAAATCTCTG
TTCCTAGAGACCGTAACGGTGAATTTGAACCCAGGATTGTTAGGAAATACGAGACAACCTCCAACCAACTGGAGGAACAAATTATTGCCATGTACGCAAA
AGGTATGTCCACTCGTGATATCGAAGAACACATGCGGGACATTTACGGGATCGATATTTCGCCAACCATGGTCAGCAAGATAACCGACAAAATTCTGCCC
ATGATTTCTGAGTGGCAGTCAAGACCGTTAGAGCGGATTTACCCTGTGGTCTTTCTCGATGCTATCCACTTCAAAGTTCGCAAAGACGGCAGAATTGTTA
ATAAGGCCGCCTACAGCGTACTGGGCATCAATATGGCCGGCCAGAAAGAAGTCCTGGGCATCTGGGTTGGGGAACACGAAAGCGCCAGTTTCTGGCTCAG
TGTCTGCAATGACTTGAAAAACAGAGGCGTTCAAGACATTCTGATTGCCTGTAAAGACGGCCTTTCGGGTTTTTCCGAAGCCATTAATACGGTGTTTCCC
AAAACAGAGATCCAATTATGCGTCATTCATCAAATACGAAACTCCCTGAAATATGTGCCTTACAAAGAGCAAAAGGAGTTTATGGCTGACTTAAAGAAAG
TGTATCAGGCTTTAACAATTGAAGAAGCGGAATTGGCCTTTACCGCCTTTAAAGAAAAATGGGGCAAAAGACATCCCATCATTATAAGGTCGTGGGAAAA
CAACTGGCTCGAATTAACGGCTTACTTTAAATATCCTCACGAAATACGCCGCTTAATCTACACAACCAACGTCATTGAGGGTTATCACAGGCAGTTACGT
AAAGTAACCAAGACAAAAACAGCTTATCCGACTGATGAGGCCCTTGTTAAACTAATATACCTTGCTACCATCGAAGCATCCAAAAAATGGACAATGCCCA
TCAGAGAGTGGAAAAAATGCATGTCTCAATTTGCAATTTACTTTGAAGACAGGTTAGAATCAGAAATGGCAGTATGAACATGAGTTTATCGCTTTGGTTC
TCCCAGGGATAGAGGAAAAGAATAGGGGCAACTCTGATGAAAGTTACCCTCTATCCCCGGCAGAACCCCGCCAGGTGCTCGGGTTGCTCTCCAGCATTGC
CCTATCCTCCTGGCGAGTAAGAGCCATCTATAGGGTAACCAGTTTTTCGGAGGAATTTCCATTTACACAAAATTATTTACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1218 bp | 405 aa | 60 | 1277 | + | No |
Description :
ORF sequence :
MQDLKDKTIRELAKGCRTVDDVHEMLKSLFKDTIQQILEAEMEEHLGYKKHSPEGNNTGNSRNGYSKKTIKTRFGETEISVPRDRNGEFEPRIVRKYETT
SNQLEEQIIAMYAKGMSTRDIEEHMRDIYGIDISPTMVSKITDKILPMISEWQSRPLERIYPVVFLDAIHFKVRKDGRIVNKAAYSVLGINMAGQKEVLG
IWVGEHESASFWLSVCNDLKNRGVQDILIACKDGLSGFSEAINTVFPKTEIQLCVIHQIRNSLKYVPYKEQKEFMADLKKVYQALTIEEAELAFTAFKEK
WGKRHPIIIRSWENNWLELTAYFKYPHEIRRLIYTTNVIEGYHRQLRKVTKTKTAYPTDEALVKLIYLATIEASKKWTMPIREWKKCMSQFAIYFEDRLE
SEMAV
SNQLEEQIIAMYAKGMSTRDIEEHMRDIYGIDISPTMVSKITDKILPMISEWQSRPLERIYPVVFLDAIHFKVRKDGRIVNKAAYSVLGINMAGQKEVLG
IWVGEHESASFWLSVCNDLKNRGVQDILIACKDGLSGFSEAINTVFPKTEIQLCVIHQIRNSLKYVPYKEQKEFMADLKKVYQALTIEEAELAFTAFKEK
WGKRHPIIIRSWENNWLELTAYFKYPHEIRRLIYTTNVIEGYHRQLRKVTKTKTAYPTDEALVKLIYLATIEASKKWTMPIREWKKCMSQFAIYFEDRLE
SEMAV
Blast result :
Comments
ISDku1 is 74% aa similar to ISCbo4.
References