ISDku1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015573 ND Desulfotomaculum kuznetsovii
Desulfotomaculum kuznetsovii DSM 6115
DNA section
IS Length : 1486 bp

Ends


IR Length : 23/28

IRL : GAGAACGTAAAAAGTTTTGTGTAAATGGTTAAACTTAACGCAAAAGGAGA
IRR : GGGAGTGTAAATAATTTTGTGTAAATGGAAATTCCTCCGAAAAACTGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
GATGCGCCCGCTATAGCTCTCATCCACC8

DNA sequence

GAGAACGTAAAAAGTTTTGTGTAAATGGTTAAACTTAACGCAAAAGGAGATGACCATTTATGCAAGACTTGAAGGACAAAACCATTAGGGAACTGGCGAA
GGGCTGCCGAACTGTCGATGATGTTCATGAGATGCTCAAGAGTTTATTCAAGGACACCATACAGCAGATACTTGAAGCTGAGATGGAAGAGCACCTTGGA
TACAAGAAACACAGCCCAGAAGGAAATAATACAGGCAACAGCCGAAACGGCTACAGTAAGAAAACCATCAAGACCAGGTTTGGCGAAACCGAAATCTCTG
TTCCTAGAGACCGTAACGGTGAATTTGAACCCAGGATTGTTAGGAAATACGAGACAACCTCCAACCAACTGGAGGAACAAATTATTGCCATGTACGCAAA
AGGTATGTCCACTCGTGATATCGAAGAACACATGCGGGACATTTACGGGATCGATATTTCGCCAACCATGGTCAGCAAGATAACCGACAAAATTCTGCCC
ATGATTTCTGAGTGGCAGTCAAGACCGTTAGAGCGGATTTACCCTGTGGTCTTTCTCGATGCTATCCACTTCAAAGTTCGCAAAGACGGCAGAATTGTTA
ATAAGGCCGCCTACAGCGTACTGGGCATCAATATGGCCGGCCAGAAAGAAGTCCTGGGCATCTGGGTTGGGGAACACGAAAGCGCCAGTTTCTGGCTCAG
TGTCTGCAATGACTTGAAAAACAGAGGCGTTCAAGACATTCTGATTGCCTGTAAAGACGGCCTTTCGGGTTTTTCCGAAGCCATTAATACGGTGTTTCCC
AAAACAGAGATCCAATTATGCGTCATTCATCAAATACGAAACTCCCTGAAATATGTGCCTTACAAAGAGCAAAAGGAGTTTATGGCTGACTTAAAGAAAG
TGTATCAGGCTTTAACAATTGAAGAAGCGGAATTGGCCTTTACCGCCTTTAAAGAAAAATGGGGCAAAAGACATCCCATCATTATAAGGTCGTGGGAAAA
CAACTGGCTCGAATTAACGGCTTACTTTAAATATCCTCACGAAATACGCCGCTTAATCTACACAACCAACGTCATTGAGGGTTATCACAGGCAGTTACGT
AAAGTAACCAAGACAAAAACAGCTTATCCGACTGATGAGGCCCTTGTTAAACTAATATACCTTGCTACCATCGAAGCATCCAAAAAATGGACAATGCCCA
TCAGAGAGTGGAAAAAATGCATGTCTCAATTTGCAATTTACTTTGAAGACAGGTTAGAATCAGAAATGGCAGTATGAACATGAGTTTATCGCTTTGGTTC
TCCCAGGGATAGAGGAAAAGAATAGGGGCAACTCTGATGAAAGTTACCCTCTATCCCCGGCAGAACCCCGCCAGGTGCTCGGGTTGCTCTCCAGCATTGC
CCTATCCTCCTGGCGAGTAAGAGCCATCTATAGGGTAACCAGTTTTTCGGAGGAATTTCCATTTACACAAAATTATTTACACTCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1218 bp405 aa601277+No
ORF function : Transposase
Description :

ORF sequence :

MQDLKDKTIRELAKGCRTVDDVHEMLKSLFKDTIQQILEAEMEEHLGYKKHSPEGNNTGNSRNGYSKKTIKTRFGETEISVPRDRNGEFEPRIVRKYETT
SNQLEEQIIAMYAKGMSTRDIEEHMRDIYGIDISPTMVSKITDKILPMISEWQSRPLERIYPVVFLDAIHFKVRKDGRIVNKAAYSVLGINMAGQKEVLG
IWVGEHESASFWLSVCNDLKNRGVQDILIACKDGLSGFSEAINTVFPKTEIQLCVIHQIRNSLKYVPYKEQKEFMADLKKVYQALTIEEAELAFTAFKEK
WGKRHPIIIRSWENNWLELTAYFKYPHEIRRLIYTTNVIEGYHRQLRKVTKTKTAYPTDEALVKLIYLATIEASKKWTMPIREWKKCMSQFAIYFEDRLE
SEMAV

 

Blast result :
Comments
ISDku1 is 74% aa similar to ISCbo4.
References