ISHvo8
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001957 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV1 |
DNA section
IS Length : 1150 bp
Ends
IR Length : 25/37
IRL : GTGCTTAGGGGAAGTTATGAAGCTGGAATCTGATGTGTGAGTATGTCTGG
IRR : GTGCCTAGCGTAACTTTTGAAGATAGTTACCGAGGTGATTGTCAATCCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCGCGAGCG | TA | TGCCCGGATT | 2 |
DNA sequence
GTGCTTAGGGGAAGTTATGAAGCTGGAATCTGATGTGTGAGTATGTCTGGAGATCGCCGCAAAGAGATCGTCCGTCACCTCAGTGAGGACGATCTCGACC
GACTCCTTATGGAGTCTACTGACCAGAAACTCACTGAGCGGCTTATCTTCATCAAACGAGTTTACAAGGGCGCAACTTTGGAGGACGCTGCCGACGACGT
CGGCAGGTCCTCCGCTACTGGTACTCGGTGGGCACGCCGATGGAACAAAGGCGGTCTCGGCCTTCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAG
CTCGACGAAAAACAACAACAGCATCTCTTGGAACTTCTCCGTGAGGGTCAGCCCTGGAAGAAACAAGAAATACAGCATCTTATCAAGCAAGAATTCGACG
TCGAATTTCATCCGGTCTACCTGAGTACCTTCCTCGAAAAGCTCGGTCTCTCCTACGCAATTCCGCGGACTAAGCGTCCATCACGGCCTGAAAACGCCGA
AGAGATTCTCGACGAACGCGTCGCCGACGCGTTCGACGAGGAGTCTGGTGAGCCACACAACAAACGCGATGGAGATGACGACGAAGGCTGGGTTGTTGAC
GAAGAAATCCGAACGGACGGTGGGACCGTCCTTGGATTTCTCGACACATCTCATCCACAACCGTGGGATAACTCACAGCGGCTCTACACCGTGGATGATC
CGCACATCACCCGACCGCTGGTGAAGTTAGACGAACCAGCGGTCGGGTTCTATGCGGTCTCCGGTGAGAGTGTGCTGCAGTTTCCGAGCACTCAAGAGAA
AGAGCGGATTTGCGAATGTCTCGAAGGAGTCCGCGAGCAGAATCCGGGCGGCCGGATTCTGCTCGTGTTGGACAACTTCTCGTCGCACGTGTGTGAGTAC
ACGCGCAAGCGAGCACACCAACTTGGGATTGATCTGGTGTTTCTCCCAGTTGGCTCGCCCGATCTCAATCCAATCGAACAGGTCTGGAAGAGCCTTAAAT
GGGAAGCCTCGCCGCTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACCAGGCTCTTTGAGCAACTCACTACCAAGCTGAGCTTCGCAGCTTC
TTGGATTGACAATCACCTCGGTAACTATCTTCAAAAGTTACGCTAGGCAC
GACTCCTTATGGAGTCTACTGACCAGAAACTCACTGAGCGGCTTATCTTCATCAAACGAGTTTACAAGGGCGCAACTTTGGAGGACGCTGCCGACGACGT
CGGCAGGTCCTCCGCTACTGGTACTCGGTGGGCACGCCGATGGAACAAAGGCGGTCTCGGCCTTCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAG
CTCGACGAAAAACAACAACAGCATCTCTTGGAACTTCTCCGTGAGGGTCAGCCCTGGAAGAAACAAGAAATACAGCATCTTATCAAGCAAGAATTCGACG
TCGAATTTCATCCGGTCTACCTGAGTACCTTCCTCGAAAAGCTCGGTCTCTCCTACGCAATTCCGCGGACTAAGCGTCCATCACGGCCTGAAAACGCCGA
AGAGATTCTCGACGAACGCGTCGCCGACGCGTTCGACGAGGAGTCTGGTGAGCCACACAACAAACGCGATGGAGATGACGACGAAGGCTGGGTTGTTGAC
GAAGAAATCCGAACGGACGGTGGGACCGTCCTTGGATTTCTCGACACATCTCATCCACAACCGTGGGATAACTCACAGCGGCTCTACACCGTGGATGATC
CGCACATCACCCGACCGCTGGTGAAGTTAGACGAACCAGCGGTCGGGTTCTATGCGGTCTCCGGTGAGAGTGTGCTGCAGTTTCCGAGCACTCAAGAGAA
AGAGCGGATTTGCGAATGTCTCGAAGGAGTCCGCGAGCAGAATCCGGGCGGCCGGATTCTGCTCGTGTTGGACAACTTCTCGTCGCACGTGTGTGAGTAC
ACGCGCAAGCGAGCACACCAACTTGGGATTGATCTGGTGTTTCTCCCAGTTGGCTCGCCCGATCTCAATCCAATCGAACAGGTCTGGAAGAGCCTTAAAT
GGGAAGCCTCGCCGCTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACCAGGCTCTTTGAGCAACTCACTACCAAGCTGAGCTTCGCAGCTTC
TTGGATTGACAATCACCTCGGTAACTATCTTCAAAAGTTACGCTAGGCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 367 aa | 43 | 1146 | + | No |
Chemistry : DDE
ORF sequence :
MSGDRRKEIVRHLSEDDLDRLLMESTDQKLTERLIFIKRVYKGATLEDAADDVGRSSATGTRWARRWNKGGLGLLMPNFGGGRPPKLDEKQQQHLLELLR
EGQPWKKQEIQHLIKQEFDVEFHPVYLSTFLEKLGLSYAIPRTKRPSRPENAEEILDERVADAFDEESGEPHNKRDGDDDEGWVVDEEIRTDGGTVLGFL
DTSHPQPWDNSQRLYTVDDPHITRPLVKLDEPAVGFYAVSGESVLQFPSTQEKERICECLEGVREQNPGGRILLVLDNFSSHVCEYTRKRAHQLGIDLVF
LPVGSPDLNPIEQVWKSLKWEASPLIVESAAEYRALLTRLFEQLTTKLSFAASWIDNHLGNYLQKLR
EGQPWKKQEIQHLIKQEFDVEFHPVYLSTFLEKLGLSYAIPRTKRPSRPENAEEILDERVADAFDEESGEPHNKRDGDDDEGWVVDEEIRTDGGTVLGFL
DTSHPQPWDNSQRLYTVDDPHITRPLVKLDEPAVGFYAVSGESVLQFPSTQEKERICECLEGVREQNPGGRILLVLDNFSSHVCEYTRKRAHQLGIDLVF
LPVGSPDLNPIEQVWKSLKWEASPLIVESAAEYRALLTRLFEQLTTKLSFAASWIDNHLGNYLQKLR
Blast result :
Comments
ISHvo8 is 95% aa similar to ISH16.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605