ISHvo8

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001957 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV1
DNA section
IS Length : 1150 bp

Ends


IR Length : 25/37

IRL : GTGCTTAGGGGAAGTTATGAAGCTGGAATCTGATGTGTGAGTATGTCTGG
IRR : GTGCCTAGCGTAACTTTTGAAGATAGTTACCGAGGTGATTGTCAATCCAA

Insertion site


Left flankDirect repeatRight flankDR Length
TGCGCGAGCGTATGCCCGGATT2

DNA sequence

GTGCTTAGGGGAAGTTATGAAGCTGGAATCTGATGTGTGAGTATGTCTGGAGATCGCCGCAAAGAGATCGTCCGTCACCTCAGTGAGGACGATCTCGACC
GACTCCTTATGGAGTCTACTGACCAGAAACTCACTGAGCGGCTTATCTTCATCAAACGAGTTTACAAGGGCGCAACTTTGGAGGACGCTGCCGACGACGT
CGGCAGGTCCTCCGCTACTGGTACTCGGTGGGCACGCCGATGGAACAAAGGCGGTCTCGGCCTTCTGATGCCGAACTTCGGGGGCGGCAGGCCCCCGAAG
CTCGACGAAAAACAACAACAGCATCTCTTGGAACTTCTCCGTGAGGGTCAGCCCTGGAAGAAACAAGAAATACAGCATCTTATCAAGCAAGAATTCGACG
TCGAATTTCATCCGGTCTACCTGAGTACCTTCCTCGAAAAGCTCGGTCTCTCCTACGCAATTCCGCGGACTAAGCGTCCATCACGGCCTGAAAACGCCGA
AGAGATTCTCGACGAACGCGTCGCCGACGCGTTCGACGAGGAGTCTGGTGAGCCACACAACAAACGCGATGGAGATGACGACGAAGGCTGGGTTGTTGAC
GAAGAAATCCGAACGGACGGTGGGACCGTCCTTGGATTTCTCGACACATCTCATCCACAACCGTGGGATAACTCACAGCGGCTCTACACCGTGGATGATC
CGCACATCACCCGACCGCTGGTGAAGTTAGACGAACCAGCGGTCGGGTTCTATGCGGTCTCCGGTGAGAGTGTGCTGCAGTTTCCGAGCACTCAAGAGAA
AGAGCGGATTTGCGAATGTCTCGAAGGAGTCCGCGAGCAGAATCCGGGCGGCCGGATTCTGCTCGTGTTGGACAACTTCTCGTCGCACGTGTGTGAGTAC
ACGCGCAAGCGAGCACACCAACTTGGGATTGATCTGGTGTTTCTCCCAGTTGGCTCGCCCGATCTCAATCCAATCGAACAGGTCTGGAAGAGCCTTAAAT
GGGAAGCCTCGCCGCTGATTGTGGAGAGCGCGGCAGAATACCGCGCTCTCCTCACCAGGCTCTTTGAGCAACTCACTACCAAGCTGAGCTTCGCAGCTTC
TTGGATTGACAATCACCTCGGTAACTATCTTCAAAAGTTACGCTAGGCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1104 bp367 aa431146+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSGDRRKEIVRHLSEDDLDRLLMESTDQKLTERLIFIKRVYKGATLEDAADDVGRSSATGTRWARRWNKGGLGLLMPNFGGGRPPKLDEKQQQHLLELLR
EGQPWKKQEIQHLIKQEFDVEFHPVYLSTFLEKLGLSYAIPRTKRPSRPENAEEILDERVADAFDEESGEPHNKRDGDDDEGWVVDEEIRTDGGTVLGFL
DTSHPQPWDNSQRLYTVDDPHITRPLVKLDEPAVGFYAVSGESVLQFPSTQEKERICECLEGVREQNPGGRILLVLDNFSSHVCEYTRKRAHQLGIDLVF
LPVGSPDLNPIEQVWKSLKWEASPLIVESAAEYRALLTRLFEQLTTKLSFAASWIDNHLGNYLQKLR

 

Blast result :
Comments
ISHvo8 is 95% aa similar to ISH16.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605