ISPeth4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009454 | ND | Pelotomaculum thermopropionicum | Pelotomaculum thermopropionicum SI |
DNA section
IS Length : 1488 bp
Ends
IR Length : 25/32
IRL : GAGAACGTAAAAAGTTTTGTGTAAATGGTTATAACTAACAATAAAAGGAG
IRR : GGGAGTGTAAATTATTTTGTGTAAATGGGTATTCCCAGAAAAAATTGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTTCACTCG | CCGGATTC | CCCCCAGATG | 8 |
GGTTAGAAAA | ATTTATTA | GCTTGTTTAT | 8 |
GTTTGTTTTG | GGGAAACT | CCTTGTCTCC | 8 |
DNA sequence
GAGAACGTAAAAAGTTTTGTGTAAATGGTTATAACTAACAATAAAAGGAGCTGACCATTTATGCAAAACACTATGGACAAAACCATCAAAGAATTAGCCA
GAGAATGTGAAACCGTAGAAGATGTACACAACATGCTTAAGAACCTCTTTAAAGACACTTTGCAGCAAATATTTGAGGCCGAGATGGATGAACACTTAGG
GTATAAAAAGCATAGCCCGGAGGGTAATAATACAGGTAACAGCCGCAATGGTTACAGCAAGAAAACCATCCAGACCAAGCTGGGCAAAACCGAAATAGAA
ATACCCCGTGATCGCAATGGAGAATTTGAACCCAGGATTATCAAAAAGTACCAGACAACCTCAAATGACCTGGAAGACCAGATTATCGCCATGTACGCCA
AGGGTATGACCACCCGGGATATTGAGGATCATATGCGGGATATCTATGGTATCGACGTATCCCCGGTAATGGTCAGCAAGGTGACGGACAAAATAATGCC
TATGATCGCCGAGTGGCAGTCAAGACCCTTAGAACGCGTATACCCTATCATTTACCTGGATGCCATTTTCTTTAAAGTGCGCAAGGACAACCGTATCATA
AACAAGGCTGCCTACAGCGTACTGGGCATCAACATGGCCGGCCAGAAGGACATACTGGGCATCTGGATTGGGGAAAATGAAAGTGCCAGCTTCTGGCTTG
GAGTGTGCAACGACCTGAAAAACAGAGGCGTGCAGGACATCCTGATTGCCTGTAAAGACGGGCTTTCCGGGTTTTCCGAGGCTATCAATACCGTGTTTCC
CCGGACAGAAATCCAGCTATGCATAATACATCAAATCCGTAATTCCCTGAAATACGTGCCTTGGAAGGAACAAAAGGAATTAATGGCCGACCTCAAGAAA
GTATACCAGGCCCTTACCATGGAGGAAGCGGAACTCGCCTTTAAAATGTTCAAGGAGAAGTGGGGTAAAAAACACCCGGTTATTATCCGCTCCTGGGAGA
AAAACTGGCTGGAACTGACGGCTTACTTCAAGTACCCATACGAGATTCGCAAACTCATTTACACTACCAATATCATCGAAGGATACCACCGGCAGCTACG
CAAGGTAACCAAGACAAAAACCGCGTATCCGACGGATGACGCCTTAAAAAAGATTATCTACCTGGCTACTGTTGAGGCATCCAAAAAGTGGACTGTACCG
ATCAGGGAGTGGAAAAGTTGTATCTCACAGTTTGCCATCCACTTCAGCGATAGGCTGGAACCGGAACTGATGGTTGGATAATGAGTTTACCGCTTTTGTT
CTCCCAAGGATAGCAGGAAAATGATAGCAGGGCAGCCTCTAGGCCACCCCTGCTGTCCTCGGCAGAACCCTGCCAGGCGCTCGGGTTGCTCTCCAGCAGT
GCCCTACCCTCCTGGCAGGTAAGAGCCATTTATAGCTTAACCAATTTTTTCTGGGAATACCCATTTACACAAAATAATTTACACTCCC
GAGAATGTGAAACCGTAGAAGATGTACACAACATGCTTAAGAACCTCTTTAAAGACACTTTGCAGCAAATATTTGAGGCCGAGATGGATGAACACTTAGG
GTATAAAAAGCATAGCCCGGAGGGTAATAATACAGGTAACAGCCGCAATGGTTACAGCAAGAAAACCATCCAGACCAAGCTGGGCAAAACCGAAATAGAA
ATACCCCGTGATCGCAATGGAGAATTTGAACCCAGGATTATCAAAAAGTACCAGACAACCTCAAATGACCTGGAAGACCAGATTATCGCCATGTACGCCA
AGGGTATGACCACCCGGGATATTGAGGATCATATGCGGGATATCTATGGTATCGACGTATCCCCGGTAATGGTCAGCAAGGTGACGGACAAAATAATGCC
TATGATCGCCGAGTGGCAGTCAAGACCCTTAGAACGCGTATACCCTATCATTTACCTGGATGCCATTTTCTTTAAAGTGCGCAAGGACAACCGTATCATA
AACAAGGCTGCCTACAGCGTACTGGGCATCAACATGGCCGGCCAGAAGGACATACTGGGCATCTGGATTGGGGAAAATGAAAGTGCCAGCTTCTGGCTTG
GAGTGTGCAACGACCTGAAAAACAGAGGCGTGCAGGACATCCTGATTGCCTGTAAAGACGGGCTTTCCGGGTTTTCCGAGGCTATCAATACCGTGTTTCC
CCGGACAGAAATCCAGCTATGCATAATACATCAAATCCGTAATTCCCTGAAATACGTGCCTTGGAAGGAACAAAAGGAATTAATGGCCGACCTCAAGAAA
GTATACCAGGCCCTTACCATGGAGGAAGCGGAACTCGCCTTTAAAATGTTCAAGGAGAAGTGGGGTAAAAAACACCCGGTTATTATCCGCTCCTGGGAGA
AAAACTGGCTGGAACTGACGGCTTACTTCAAGTACCCATACGAGATTCGCAAACTCATTTACACTACCAATATCATCGAAGGATACCACCGGCAGCTACG
CAAGGTAACCAAGACAAAAACCGCGTATCCGACGGATGACGCCTTAAAAAAGATTATCTACCTGGCTACTGTTGAGGCATCCAAAAAGTGGACTGTACCG
ATCAGGGAGTGGAAAAGTTGTATCTCACAGTTTGCCATCCACTTCAGCGATAGGCTGGAACCGGAACTGATGGTTGGATAATGAGTTTACCGCTTTTGTT
CTCCCAAGGATAGCAGGAAAATGATAGCAGGGCAGCCTCTAGGCCACCCCTGCTGTCCTCGGCAGAACCCTGCCAGGCGCTCGGGTTGCTCTCCAGCAGT
GCCCTACCCTCCTGGCAGGTAAGAGCCATTTATAGCTTAACCAATTTTTTCTGGGAATACCCATTTACACAAAATAATTTACACTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1221 bp | 406 aa | 61 | 1281 | + | No |
Chemistry : DDE
ORF sequence :
MQNTMDKTIKELARECETVEDVHNMLKNLFKDTLQQIFEAEMDEHLGYKKHSPEGNNTGNSRNGYSKKTIQTKLGKTEIEIPRDRNGEFEPRIIKKYQTT
SNDLEDQIIAMYAKGMTTRDIEDHMRDIYGIDVSPVMVSKVTDKIMPMIAEWQSRPLERVYPIIYLDAIFFKVRKDNRIINKAAYSVLGINMAGQKDILG
IWIGENESASFWLGVCNDLKNRGVQDILIACKDGLSGFSEAINTVFPRTEIQLCIIHQIRNSLKYVPWKEQKELMADLKKVYQALTMEEAELAFKMFKEK
WGKKHPVIIRSWEKNWLELTAYFKYPYEIRKLIYTTNIIEGYHRQLRKVTKTKTAYPTDDALKKIIYLATVEASKKWTVPIREWKSCISQFAIHFSDRLE
PELMVG
SNDLEDQIIAMYAKGMTTRDIEDHMRDIYGIDVSPVMVSKVTDKIMPMIAEWQSRPLERVYPIIYLDAIFFKVRKDNRIINKAAYSVLGINMAGQKDILG
IWIGENESASFWLGVCNDLKNRGVQDILIACKDGLSGFSEAINTVFPRTEIQLCIIHQIRNSLKYVPWKEQKELMADLKKVYQALTMEEAELAFKMFKEK
WGKKHPVIIRSWEKNWLELTAYFKYPYEIRKLIYTTNIIEGYHRQLRKVTKTKTAYPTDDALKKIIYLATVEASKKWTVPIREWKSCISQFAIHFSDRLE
PELMVG
Blast result :
Comments
ISPeth4 is 73% aa similar to ISCbo4.
References