ISHvo7
- Family IS5
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001956 | ND | Haloferax volcanii | Haloferax volcanii DS2 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 15
IRL : GAGCGTGTCATAGAAAGCGTCACATACGAGGATGCAGGGTGCGGAAAGTG
IRR : GAGCGTGTCATAGAATTCTCCTCATACTCTGAGCATCTCCCGTCCCGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATAAAATAACA | TCACTA | CCGTGCTAGATA | 6 |
TCCGTTTTAGTA | ACAGTA | TTCTTCGTCGGA | 6 |
DNA sequence
GAGCGTGTCATAGAAAGCGTCACATACGAGGATGCAGGGTGCGGAAAGTGTGTCCAGCACAACCACAACCCTGCAAAACGTTGCTTCGCTCGACGAGTTT
TTGAAAGCAGCGGCCACCGAGACAGTTCCGTTGTTTGAACATCTTGAGTTCGAATTTCTGCGTGAGTACGACGTGTTCGCCCCCTGCAAGCGGGGGCGAA
CACGAGTACACAAGCCACCAGAACTCTTCCGAGGCTTTCTGCACTGCTACTACGAGAACGTCTACGGTACTCGTCCAATCACGCGCGAACTGCAGAATCC
ACTCGTCTGGCGCTGTTGTGGCTTCGATCGACCGCCGTCGCGAGACGCGGTCGATCGCTTCCTCACTGACCTCGAACACGTCGTTGACGAAGTCTTCGAC
CACCTCGTCGAGCAGGCCGCCCTCCGGGGCCTGCTCGACTCTACGTATCGAATCGATTCAACTCACGTTGAGGCGATTCAGTGGAACGATGAAGCCTCAT
GGAACTACGATTCGACGGCTGAAGAGCACTACTACGGCTTCGGCTGTACGATCGTCTCGACGGGAGCGAAGATTCCTATTGCAGCAGAATTCACACAGGC
GAAACAAGCCTCAGAAGAGACGGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGACACTCCGATCTGGATAATTGGCGACAGTGCCTACGACACACTC
CAGTGGCACGACTTCCTGCTGGACGCAGGAGTCGTGCCCGTTGCGCCGTACAATCCGCGAAACACCGATGAGCCGCTCGATATCGAGTACAGGGTTGAAG
ATCAAATAGAGGAACACAGCGAGGACCTTCAGCTGAAGCAATCGGTCTTAGAGGAGACGTACAACCGCCGGACACAGGTTGAGCGAACGAACGATGCGGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTTCACGCACGAGCGCAAGTGTTTCTGGCGCTGTGCCTGCGACTCGTCGTCGCAATCACC
AACGACGAACGAGGTGACAACCCGGGACGGGAGATGCTCAGAGTATGAGGAGAATTCTATGACACGCTC
TTGAAAGCAGCGGCCACCGAGACAGTTCCGTTGTTTGAACATCTTGAGTTCGAATTTCTGCGTGAGTACGACGTGTTCGCCCCCTGCAAGCGGGGGCGAA
CACGAGTACACAAGCCACCAGAACTCTTCCGAGGCTTTCTGCACTGCTACTACGAGAACGTCTACGGTACTCGTCCAATCACGCGCGAACTGCAGAATCC
ACTCGTCTGGCGCTGTTGTGGCTTCGATCGACCGCCGTCGCGAGACGCGGTCGATCGCTTCCTCACTGACCTCGAACACGTCGTTGACGAAGTCTTCGAC
CACCTCGTCGAGCAGGCCGCCCTCCGGGGCCTGCTCGACTCTACGTATCGAATCGATTCAACTCACGTTGAGGCGATTCAGTGGAACGATGAAGCCTCAT
GGAACTACGATTCGACGGCTGAAGAGCACTACTACGGCTTCGGCTGTACGATCGTCTCGACGGGAGCGAAGATTCCTATTGCAGCAGAATTCACACAGGC
GAAACAAGCCTCAGAAGAGACGGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGACACTCCGATCTGGATAATTGGCGACAGTGCCTACGACACACTC
CAGTGGCACGACTTCCTGCTGGACGCAGGAGTCGTGCCCGTTGCGCCGTACAATCCGCGAAACACCGATGAGCCGCTCGATATCGAGTACAGGGTTGAAG
ATCAAATAGAGGAACACAGCGAGGACCTTCAGCTGAAGCAATCGGTCTTAGAGGAGACGTACAACCGCCGGACACAGGTTGAGCGAACGAACGATGCGGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTTCACGCACGAGCGCAAGTGTTTCTGGCGCTGTGCCTGCGACTCGTCGTCGCAATCACC
AACGACGAACGAGGTGACAACCCGGGACGGGAGATGCTCAGAGTATGAGGAGAATTCTATGACACGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 332 aa | 50 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MSSTTTTLQNVASLDEFLKAAATETVPLFEHLEFEFLREYDVFAPCKRGRTRVHKPPELFRGFLHCYYENVYGTRPITRELQNPLVWRCCGFDRPPSRDA
VDRFLTDLEHVVDEVFDHLVEQAALRGLLDSTYRIDSTHVEAIQWNDEASWNYDSTAEEHYYGFGCTIVSTGAKIPIAAEFTQAKQASEETAMRVTRDAL
AVDTPIWIIGDSAYDTLQWHDFLLDAGVVPVAPYNPRNTDEPLDIEYRVEDQIEEHSEDLQLKQSVLEETYNRRTQVERTNDAVKDCGLGHVRARGRVHA
RAQVFLALCLRLVVAITNDERGDNPGREMLRV
VDRFLTDLEHVVDEVFDHLVEQAALRGLLDSTYRIDSTHVEAIQWNDEASWNYDSTAEEHYYGFGCTIVSTGAKIPIAAEFTQAKQASEETAMRVTRDAL
AVDTPIWIIGDSAYDTLQWHDFLLDAGVVPVAPYNPRNTDEPLDIEYRVEDQIEEHSEDLQLKQSVLEETYNRRTQVERTNDAVKDCGLGHVRARGRVHA
RAQVFLALCLRLVVAITNDERGDNPGREMLRV
Blast result :
Comments
ISHvo7 is 88% aa similar to ISHwa14.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S.,Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M.,Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605