ISHvo7

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001956 ND Haloferax volcanii
Haloferax volcanii DS2
DNA section
IS Length : 1069 bp

Ends


IR Length : 15

IRL : GAGCGTGTCATAGAAAGCGTCACATACGAGGATGCAGGGTGCGGAAAGTG
IRR : GAGCGTGTCATAGAATTCTCCTCATACTCTGAGCATCTCCCGTCCCGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GATAAAATAACATCACTACCGTGCTAGATA6
TCCGTTTTAGTAACAGTATTCTTCGTCGGA6

DNA sequence

GAGCGTGTCATAGAAAGCGTCACATACGAGGATGCAGGGTGCGGAAAGTGTGTCCAGCACAACCACAACCCTGCAAAACGTTGCTTCGCTCGACGAGTTT
TTGAAAGCAGCGGCCACCGAGACAGTTCCGTTGTTTGAACATCTTGAGTTCGAATTTCTGCGTGAGTACGACGTGTTCGCCCCCTGCAAGCGGGGGCGAA
CACGAGTACACAAGCCACCAGAACTCTTCCGAGGCTTTCTGCACTGCTACTACGAGAACGTCTACGGTACTCGTCCAATCACGCGCGAACTGCAGAATCC
ACTCGTCTGGCGCTGTTGTGGCTTCGATCGACCGCCGTCGCGAGACGCGGTCGATCGCTTCCTCACTGACCTCGAACACGTCGTTGACGAAGTCTTCGAC
CACCTCGTCGAGCAGGCCGCCCTCCGGGGCCTGCTCGACTCTACGTATCGAATCGATTCAACTCACGTTGAGGCGATTCAGTGGAACGATGAAGCCTCAT
GGAACTACGATTCGACGGCTGAAGAGCACTACTACGGCTTCGGCTGTACGATCGTCTCGACGGGAGCGAAGATTCCTATTGCAGCAGAATTCACACAGGC
GAAACAAGCCTCAGAAGAGACGGCGATGCGCGTCACGCGTGACGCGCTCGCCGTCGACACTCCGATCTGGATAATTGGCGACAGTGCCTACGACACACTC
CAGTGGCACGACTTCCTGCTGGACGCAGGAGTCGTGCCCGTTGCGCCGTACAATCCGCGAAACACCGATGAGCCGCTCGATATCGAGTACAGGGTTGAAG
ATCAAATAGAGGAACACAGCGAGGACCTTCAGCTGAAGCAATCGGTCTTAGAGGAGACGTACAACCGCCGGACACAGGTTGAGCGAACGAACGATGCGGT
CAAGGACTGCGGCCTCGGGCACGTCCGCGCCCGAGGCCGCGTTCACGCACGAGCGCAAGTGTTTCTGGCGCTGTGCCTGCGACTCGTCGTCGCAATCACC
AACGACGAACGAGGTGACAACCCGGGACGGGAGATGCTCAGAGTATGAGGAGAATTCTATGACACGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
999 bp332 aa501048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSTTTTLQNVASLDEFLKAAATETVPLFEHLEFEFLREYDVFAPCKRGRTRVHKPPELFRGFLHCYYENVYGTRPITRELQNPLVWRCCGFDRPPSRDA
VDRFLTDLEHVVDEVFDHLVEQAALRGLLDSTYRIDSTHVEAIQWNDEASWNYDSTAEEHYYGFGCTIVSTGAKIPIAAEFTQAKQASEETAMRVTRDAL
AVDTPIWIIGDSAYDTLQWHDFLLDAGVVPVAPYNPRNTDEPLDIEYRVEDQIEEHSEDLQLKQSVLEETYNRRTQVERTNDAVKDCGLGHVRARGRVHA
RAQVFLALCLRLVVAITNDERGDNPGREMLRV

 

Blast result :
Comments
ISHvo7 is 88% aa similar to ISHwa14.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S.,Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M.,Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605