ISHvo4
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001957 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV1 |
DNA section
IS Length : 931 bp
Ends
IR Length : 19/26
IRL : TGCTCTGTTGAATAGCGATCTATTCAGCCGATATCACAGGTTTAGAAGGA
IRR : TGCTCTGTTGAATAGATGCTGAATCACGGTTACAGCGGCTCACACAGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACAGTAGTGCT | GAAGCTGC | TGCTCTTATCGC | 8 |
DNA sequence
TGCTCTGTTGAATAGCGATCTATTCAGCCGATATCACAGGTTTAGAAGGATGAAGCCGAGGAATTCGATTCTTGCCTATGGAAATCGATCTCCTCGACTT
CGTTGAGCAGTGTCGTCACCTAGCTAAACAAGCGTTGGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGGTCCACGTCGTTCTGCAC
TGCTTTCGGCTCGAAGAAGGCCACAGCTACCGTGAAACGCCGAATCGGCTGAAGTATATCGCCGAGGTTCGTGACGCACTCGGTTTAGATCGGGACGAGC
TGCCGGACTACAGCACGATCTACAAATCGTTCGACCGGCTGAAAATGTGGGTCTGGCGGGCGCTGCTGCGCGTTTCTGCGCAGCAGCACCCGCAGTCTGG
CCACGCCGCTCTCGACAGCACGTTCTTCGACCGTCGCCGTGCGTCGTCGTACTTCCGCCAGCGGTCGGGAAGCACCGTACAGACGCTGAAAGTGACGACA
TTAACTGATGTGGAGTCGCTTGCGGTTCTTGACGTTCACATCACAGCACGGTGGAAGCATGATACGAAGACCGGACCGCAGGTCGTCCGCCGAAACGCGG
ACGACCTGCAGTCGGTCGCCGCCGACAACGGCTTCCAAGACTGGCACACCGAGTACGAGATCGCTGCATATGACGTTGAGTACCTCGTTCACTACCGTGG
ATCATCACCGAAAGCAGCTCTGAACAACGCGCTCAACCGGGCAAACGGCTACTCACAGCGCTGGATGGCCGAAACCTCGTACTCGACAGCCAAGCGCTCG
CTCGGCGACGCCGTGCGAGCGCTCGGCTGGTATCGGCAGTTCCGTGAAATTGTCTTGATGTTCGCCATCATCAACATAGAATCGCTGTGTGAGCCGCTGT
AACCGTGATTCAGCATCTATTCAACAGAGCA
CGTTGAGCAGTGTCGTCACCTAGCTAAACAAGCGTTGGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGGTCCACGTCGTTCTGCAC
TGCTTTCGGCTCGAAGAAGGCCACAGCTACCGTGAAACGCCGAATCGGCTGAAGTATATCGCCGAGGTTCGTGACGCACTCGGTTTAGATCGGGACGAGC
TGCCGGACTACAGCACGATCTACAAATCGTTCGACCGGCTGAAAATGTGGGTCTGGCGGGCGCTGCTGCGCGTTTCTGCGCAGCAGCACCCGCAGTCTGG
CCACGCCGCTCTCGACAGCACGTTCTTCGACCGTCGCCGTGCGTCGTCGTACTTCCGCCAGCGGTCGGGAAGCACCGTACAGACGCTGAAAGTGACGACA
TTAACTGATGTGGAGTCGCTTGCGGTTCTTGACGTTCACATCACAGCACGGTGGAAGCATGATACGAAGACCGGACCGCAGGTCGTCCGCCGAAACGCGG
ACGACCTGCAGTCGGTCGCCGCCGACAACGGCTTCCAAGACTGGCACACCGAGTACGAGATCGCTGCATATGACGTTGAGTACCTCGTTCACTACCGTGG
ATCATCACCGAAAGCAGCTCTGAACAACGCGCTCAACCGGGCAAACGGCTACTCACAGCGCTGGATGGCCGAAACCTCGTACTCGACAGCCAAGCGCTCG
CTCGGCGACGCCGTGCGAGCGCTCGGCTGGTATCGGCAGTTCCGTGAAATTGTCTTGATGTTCGCCATCATCAACATAGAATCGCTGTGTGAGCCGCTGT
AACCGTGATTCAGCATCTATTCAACAGAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 274 aa | 78 | 902 | + | No |
Chemistry : DDE
ORF sequence :
MEIDLLDFVEQCRHLAKQALGKHAGEPASGGFARWVHVVLHCFRLEEGHSYRETPNRLKYIAEVRDALGLDRDELPDYSTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHAALDSTFFDRRRASSYFRQRSGSTVQTLKVTTLTDVESLAVLDVHITARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAYDV
EYLVHYRGSSPKAALNNALNRANGYSQRWMAETSYSTAKRSLGDAVRALGWYRQFREIVLMFAIINIESLCEPL
AQQHPQSGHAALDSTFFDRRRASSYFRQRSGSTVQTLKVTTLTDVESLAVLDVHITARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAYDV
EYLVHYRGSSPKAALNNALNRANGYSQRWMAETSYSTAKRSLGDAVRALGWYRQFREIVLMFAIINIESLCEPL
Blast result :
Comments
ISHvo4 is 94% aa similar to ISHla3.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605