ISHvo4

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001957 ND Haloferax volcanii
Haloferax volcanii DS2 plasmid pHV1
DNA section
IS Length : 931 bp

Ends


IR Length : 19/26

IRL : TGCTCTGTTGAATAGCGATCTATTCAGCCGATATCACAGGTTTAGAAGGA
IRR : TGCTCTGTTGAATAGATGCTGAATCACGGTTACAGCGGCTCACACAGCGA

Insertion site


Left flankDirect repeatRight flankDR Length
CACAGTAGTGCTGAAGCTGCTGCTCTTATCGC8

DNA sequence

TGCTCTGTTGAATAGCGATCTATTCAGCCGATATCACAGGTTTAGAAGGATGAAGCCGAGGAATTCGATTCTTGCCTATGGAAATCGATCTCCTCGACTT
CGTTGAGCAGTGTCGTCACCTAGCTAAACAAGCGTTGGGGAAGCACGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGGTCCACGTCGTTCTGCAC
TGCTTTCGGCTCGAAGAAGGCCACAGCTACCGTGAAACGCCGAATCGGCTGAAGTATATCGCCGAGGTTCGTGACGCACTCGGTTTAGATCGGGACGAGC
TGCCGGACTACAGCACGATCTACAAATCGTTCGACCGGCTGAAAATGTGGGTCTGGCGGGCGCTGCTGCGCGTTTCTGCGCAGCAGCACCCGCAGTCTGG
CCACGCCGCTCTCGACAGCACGTTCTTCGACCGTCGCCGTGCGTCGTCGTACTTCCGCCAGCGGTCGGGAAGCACCGTACAGACGCTGAAAGTGACGACA
TTAACTGATGTGGAGTCGCTTGCGGTTCTTGACGTTCACATCACAGCACGGTGGAAGCATGATACGAAGACCGGACCGCAGGTCGTCCGCCGAAACGCGG
ACGACCTGCAGTCGGTCGCCGCCGACAACGGCTTCCAAGACTGGCACACCGAGTACGAGATCGCTGCATATGACGTTGAGTACCTCGTTCACTACCGTGG
ATCATCACCGAAAGCAGCTCTGAACAACGCGCTCAACCGGGCAAACGGCTACTCACAGCGCTGGATGGCCGAAACCTCGTACTCGACAGCCAAGCGCTCG
CTCGGCGACGCCGTGCGAGCGCTCGGCTGGTATCGGCAGTTCCGTGAAATTGTCTTGATGTTCGCCATCATCAACATAGAATCGCTGTGTGAGCCGCTGT
AACCGTGATTCAGCATCTATTCAACAGAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa78902+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEIDLLDFVEQCRHLAKQALGKHAGEPASGGFARWVHVVLHCFRLEEGHSYRETPNRLKYIAEVRDALGLDRDELPDYSTIYKSFDRLKMWVWRALLRVS
AQQHPQSGHAALDSTFFDRRRASSYFRQRSGSTVQTLKVTTLTDVESLAVLDVHITARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAYDV
EYLVHYRGSSPKAALNNALNRANGYSQRWMAETSYSTAKRSLGDAVRALGWYRQFREIVLMFAIINIESLCEPL

 

Blast result :
Comments
ISHvo4 is 94% aa similar to ISHla3.
References
1] Hartman, A.L., Norais, C., Badger, J.H., Delmas, S., Haldenby, S., Madupu, R., Robinson, J., Khouri, H., Ren, Q., Lowe, T.M., Maupin-Furlow, J., Pohlschroder, M., Daniels, C., Pfeiffer, F.,
Allers, T., Eisen, J.A. (2010) PLoS ONE 5, E9605-E9605