ISSm3

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
KC352682 ND Serratia marcescens
Serratia marcescens
DNA section
IS Length : 1168 bp

Ends


Left end : TTGTATCTCGAAAGTGGATTACTATGAACTGGCTTAGATTTGGCAAGGTCTGTGTAGTCAGATTCCTCCCGGGGTTATTGAAGCCCGCAGCATAGCGATT
Right end : AAAATTGCTGACCATCCTGAACGCAATGCTGAAAAAGAATGAAGCATGGGATCCGATGTATCACCAGCCTGCTTCGTAGTCGCACTCGAAAGACAGTTGC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCTCCTCCTATGCTCGAA0

DNA sequence

TTGTATCTCGAAAGTGGATTACTATGAACTGGCTTAGATTTGGCAAGGTCTGTGTAGTCAGATTCCTCCCGGGGTTATTGAAGCCCGCAGCATAGCGATT
GACGCACAGGCTGAGCCATTCATCTGAAGCCCGAACAGTTGTCCGAACTTCAAATCGTATTTGCAAGGAGGGGTATAGATGAGCGTGTCAAATCAACGTT
GTGCAGGCATGGATGTTTCAAAAGGAACTCTGGATATTGCAATCAGCAATATTGCCAGCCAGTTCACTGTACCAAATGGAACTGACGGTTTTACTCAAAT
TATCGGAGAATTAAAGAAAAATGAGACAAGATTGATCCTCATGGAAGCAACAGGAGGACTGGAGTCAGGTGTGGCTTGTTATCTTCAATCAGAAGGCTTT
GACGTTGTCGTCATTAACCCCCGTCAGGCTCGAGATTTTGCCCGTGCAATGGGCTATCTTGCGAAGACGAATCGTATTGATGCCAGAATATTGCTTCAGA
TGTCGGAAGTGATTAGCCAGCACCCAGAACGGGAAAAATACATCCGTCCCTTGCCTGATGCACAGAGGCAGATTCTGGCAGCGATGGTGGTCAGATGCAG
ACAGCTAACAGTCATGCTTACAGCCGAACGAAACCGATTACACCCCTCGCATCCTCAGAGTTATGAAAGCATTAGATCAATTATTTCGGTACTGAAGAGT
GATCTGACTCGCATTCAAGGTGAAATGTCGATTCACATCAAGAGCCATTTCAGTGAGTTATCTGATCTACTGAGTGCAGTTAAAGGTATTGGGGCTGCGA
CAGTTGCTGTATTGCTGGCTGAAGTTCATGAGCTTGGTTCGCTCTCTCGACGTGAAATTAGCGCCCTTATTGGGGGGGCTCGAGTAAACAGGGATTCCGG
TACGATGCGCGGTCGCCGAACAGTATTCGGAGGGCGAGCTTCCGTCCGTACAGCTCTCTATATGTCAGCCCTGGTTGGGACGAGGCACAACCAGGTAATT
AAAGAGTTCTATACATGCCTGGTTGCCGCAGGAAAATCCAAAAAAGTTGCACTGACGGCCTGCATCAGAAAATTGCTGACCATCCTGAACGCAATGCTGA
AAAAGAATGAAGCATGGGATCCGATGTATCACCAGCCTGCTTCGTAGTCGCACTCGAAAGACAGTTGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa1791147+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSVSNQRCAGMDVSKGTLDIAISNIASQFTVPNGTDGFTQIIGELKKNETRLILMEATGGLESGVACYLQSEGFDVVVINPRQARDFARAMGYLAKTNRI
DARILLQMSEVISQHPEREKYIRPLPDAQRQILAAMVVRCRQLTVMLTAERNRLHPSHPQSYESIRSIISVLKSDLTRIQGEMSIHIKSHFSELSDLLSA
VKGIGAATVAVLLAEVHELGSLSRREISALIGGARVNRDSGTMRGRRTVFGGRASVRTALYMSALVGTRHNQVIKEFYTCLVAAGKSKKVALTACIRKLL
TILNAMLKKNEAWDPMYHQPAS

 

Blast result :
Comments
ISSm3 is 74% aa similar to ISEc32.
References
1] Michael R. Mulvey (2012) Direct submission