ISSm3
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
KC352682 | ND | Serratia marcescens | Serratia marcescens |
DNA section
IS Length : 1168 bp
Ends
Left end : TTGTATCTCGAAAGTGGATTACTATGAACTGGCTTAGATTTGGCAAGGTCTGTGTAGTCAGATTCCTCCCGGGGTTATTGAAGCCCGCAGCATAGCGATT
Right end : AAAATTGCTGACCATCCTGAACGCAATGCTGAAAAAGAATGAAGCATGGGATCCGATGTATCACCAGCCTGCTTCGTAGTCGCACTCGAAAGACAGTTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCTCCTCC | TATGCTCGAA | 0 |
DNA sequence
TTGTATCTCGAAAGTGGATTACTATGAACTGGCTTAGATTTGGCAAGGTCTGTGTAGTCAGATTCCTCCCGGGGTTATTGAAGCCCGCAGCATAGCGATT
GACGCACAGGCTGAGCCATTCATCTGAAGCCCGAACAGTTGTCCGAACTTCAAATCGTATTTGCAAGGAGGGGTATAGATGAGCGTGTCAAATCAACGTT
GTGCAGGCATGGATGTTTCAAAAGGAACTCTGGATATTGCAATCAGCAATATTGCCAGCCAGTTCACTGTACCAAATGGAACTGACGGTTTTACTCAAAT
TATCGGAGAATTAAAGAAAAATGAGACAAGATTGATCCTCATGGAAGCAACAGGAGGACTGGAGTCAGGTGTGGCTTGTTATCTTCAATCAGAAGGCTTT
GACGTTGTCGTCATTAACCCCCGTCAGGCTCGAGATTTTGCCCGTGCAATGGGCTATCTTGCGAAGACGAATCGTATTGATGCCAGAATATTGCTTCAGA
TGTCGGAAGTGATTAGCCAGCACCCAGAACGGGAAAAATACATCCGTCCCTTGCCTGATGCACAGAGGCAGATTCTGGCAGCGATGGTGGTCAGATGCAG
ACAGCTAACAGTCATGCTTACAGCCGAACGAAACCGATTACACCCCTCGCATCCTCAGAGTTATGAAAGCATTAGATCAATTATTTCGGTACTGAAGAGT
GATCTGACTCGCATTCAAGGTGAAATGTCGATTCACATCAAGAGCCATTTCAGTGAGTTATCTGATCTACTGAGTGCAGTTAAAGGTATTGGGGCTGCGA
CAGTTGCTGTATTGCTGGCTGAAGTTCATGAGCTTGGTTCGCTCTCTCGACGTGAAATTAGCGCCCTTATTGGGGGGGCTCGAGTAAACAGGGATTCCGG
TACGATGCGCGGTCGCCGAACAGTATTCGGAGGGCGAGCTTCCGTCCGTACAGCTCTCTATATGTCAGCCCTGGTTGGGACGAGGCACAACCAGGTAATT
AAAGAGTTCTATACATGCCTGGTTGCCGCAGGAAAATCCAAAAAAGTTGCACTGACGGCCTGCATCAGAAAATTGCTGACCATCCTGAACGCAATGCTGA
AAAAGAATGAAGCATGGGATCCGATGTATCACCAGCCTGCTTCGTAGTCGCACTCGAAAGACAGTTGC
GACGCACAGGCTGAGCCATTCATCTGAAGCCCGAACAGTTGTCCGAACTTCAAATCGTATTTGCAAGGAGGGGTATAGATGAGCGTGTCAAATCAACGTT
GTGCAGGCATGGATGTTTCAAAAGGAACTCTGGATATTGCAATCAGCAATATTGCCAGCCAGTTCACTGTACCAAATGGAACTGACGGTTTTACTCAAAT
TATCGGAGAATTAAAGAAAAATGAGACAAGATTGATCCTCATGGAAGCAACAGGAGGACTGGAGTCAGGTGTGGCTTGTTATCTTCAATCAGAAGGCTTT
GACGTTGTCGTCATTAACCCCCGTCAGGCTCGAGATTTTGCCCGTGCAATGGGCTATCTTGCGAAGACGAATCGTATTGATGCCAGAATATTGCTTCAGA
TGTCGGAAGTGATTAGCCAGCACCCAGAACGGGAAAAATACATCCGTCCCTTGCCTGATGCACAGAGGCAGATTCTGGCAGCGATGGTGGTCAGATGCAG
ACAGCTAACAGTCATGCTTACAGCCGAACGAAACCGATTACACCCCTCGCATCCTCAGAGTTATGAAAGCATTAGATCAATTATTTCGGTACTGAAGAGT
GATCTGACTCGCATTCAAGGTGAAATGTCGATTCACATCAAGAGCCATTTCAGTGAGTTATCTGATCTACTGAGTGCAGTTAAAGGTATTGGGGCTGCGA
CAGTTGCTGTATTGCTGGCTGAAGTTCATGAGCTTGGTTCGCTCTCTCGACGTGAAATTAGCGCCCTTATTGGGGGGGCTCGAGTAAACAGGGATTCCGG
TACGATGCGCGGTCGCCGAACAGTATTCGGAGGGCGAGCTTCCGTCCGTACAGCTCTCTATATGTCAGCCCTGGTTGGGACGAGGCACAACCAGGTAATT
AAAGAGTTCTATACATGCCTGGTTGCCGCAGGAAAATCCAAAAAAGTTGCACTGACGGCCTGCATCAGAAAATTGCTGACCATCCTGAACGCAATGCTGA
AAAAGAATGAAGCATGGGATCCGATGTATCACCAGCCTGCTTCGTAGTCGCACTCGAAAGACAGTTGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 179 | 1147 | + | No |
Chemistry : DEDD
ORF sequence :
MSVSNQRCAGMDVSKGTLDIAISNIASQFTVPNGTDGFTQIIGELKKNETRLILMEATGGLESGVACYLQSEGFDVVVINPRQARDFARAMGYLAKTNRI
DARILLQMSEVISQHPEREKYIRPLPDAQRQILAAMVVRCRQLTVMLTAERNRLHPSHPQSYESIRSIISVLKSDLTRIQGEMSIHIKSHFSELSDLLSA
VKGIGAATVAVLLAEVHELGSLSRREISALIGGARVNRDSGTMRGRRTVFGGRASVRTALYMSALVGTRHNQVIKEFYTCLVAAGKSKKVALTACIRKLL
TILNAMLKKNEAWDPMYHQPAS
DARILLQMSEVISQHPEREKYIRPLPDAQRQILAAMVVRCRQLTVMLTAERNRLHPSHPQSYESIRSIISVLKSDLTRIQGEMSIHIKSHFSELSDLLSA
VKGIGAATVAVLLAEVHELGSLSRREISALIGGARVNRDSGTMRGRRTVFGGRASVRTALYMSALVGTRHNQVIKEFYTCLVAAGKSKKVALTACIRKLL
TILNAMLKKNEAWDPMYHQPAS
Blast result :
Comments
ISSm3 is 74% aa similar to ISEc32.
References
1] Michael R. Mulvey (2012) Direct submission