ISMfu1

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_015711 ND Myxococcus fulvus
Myxococcus fulvus HW-1
DNA section
IS Length : 1293 bp

Ends


IR Length : 16/21

IRL : GGGCCTGTCCGGATATTAGTTGGCCGAATAGGGGAATGGTCGGGCAACCG
IRR : GGGCCTGATCAGAAATTACTTATCCATACGAGGCTTGAGGATGTAGTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
CTCTGGGACGTTAATGCACGCAGCGAA3
CGGTGGGACGTTATGCGCGCGGCCCAC3
CCCGGGGTTACTACCGGCTTTGCGTCTT0
CCGAGTACGCCTACCGGCTTTGCGTCT3

DNA sequence

GGGCCTGTCCGGATATTAGTTGGCCGAATAGGGGAATGGTCGGGCAACCGAGCATGTTGGCCGGGTATGGACGCGGAAAAGGCCGTGGCGGAGCGCTACC
AGGCACTCCGGGACGTCATGGATGAGCGGGTGACGCGCCGCTGGGCAGGCGCCGAGGCGCTCGCGCTGGGGCGAGGCGGCGTCACAGCGGTCGCCCGGGC
GACGGGCTTGGCGCGCATGACGGTGCGCGCGGGGCGCGACGAGGTGAGCGGGAAGAGGCCTGAAGGAGAGTTGGTGCGGGTGCGGCGCAAGGGCGCTGGG
CGTCCGCCTGTGGAAGTGGCCCAGCCGGGGCTGACCGAAACCCTGGAGTCGCTGGTGGACCCGGTGACTCGGGGTGACCCGGAGTCGCCGCTGCGCTGGA
CGTGCAAGAGCACGAGGATGCTGGCTTCGGAGTTGGAGAAGCACGGCTACAAAGTGAGCCCCCAGAAGGTGGGCGAGTTGCTCAAGAGCCAGGGCTACAG
CTTGCAGGCAATCTCCAAGTCGTTGGAGGGAGAGTCGCACCCGGACCGCAACGCCCAGTTCGAGCACATCAACGCGCAGGTGCAGCAGTTCCAGGCTCGG
GGGCAGCCCGTCGTTTCGGTGGACACGAAAAAGAAGGAGTTGGTGGGGGAGTTCAAGAATGGAGGCCGTGAATGGCAGCCGGCGGGGGCGCCGGTGCTGA
GCCTGACGCATGACTTCCCAGACACAGCGGTGGGCAAGGCGATTCCCTACGGTGTGTACGACATCGGGGACAACAGCGCCTGGGTGTCGGTGGGGGTGGA
CCACGACACGCCCGTCTTCGCCGTCAACAGTCTCGGCGCGTGGTGGCGAAAAATGGGCCAGGAGCGCTACCCCGAGGCGAAGGAACTCCTGGTGACGGCG
GACTCGGGCGGCAGCAACAGCGCGCGAAGCCGGGTCTGGAAGGCCGAACTGCAGCGGCTGGCGGACGCGACGGGGCTTTGCATCAGCGTCTGTCATTTCC
CGCCCGGCACGAGCAAGTGGAACAAGGTGGAGCATCGCCTCTTCAGCCACATCAGCCTGAATTGGAGAGGCCGCCCACTGGAGGACTACGAGACGGTGGT
GAACCTCATCGGCACCACGACCAACACCAAGGGCTTGAAGGTGAAAGCACGGCTGGACCGACGGCGCTACCGCACAGGAGTCAGCGTCTCTCCGGCGGCC
ATGGACGAACTCCACCTCGTCCGCGCGACCTTCCATGGTGACTGGAACTACATCCTCAAGCCTCGTATGGATAAGTAATTTCTGATCAGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1212 bp403 aa671278+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDAEKAVAERYQALRDVMDERVTRRWAGAEALALGRGGVTAVARATGLARMTVRAGRDEVSGKRPEGELVRVRRKGAGRPPVEVAQPGLTETLESLVDPV
TRGDPESPLRWTCKSTRMLASELEKHGYKVSPQKVGELLKSQGYSLQAISKSLEGESHPDRNAQFEHINAQVQQFQARGQPVVSVDTKKKELVGEFKNGG
REWQPAGAPVLSLTHDFPDTAVGKAIPYGVYDIGDNSAWVSVGVDHDTPVFAVNSLGAWWRKMGQERYPEAKELLVTADSGGSNSARSRVWKAELQRLAD
ATGLCISVCHFPPGTSKWNKVEHRLFSHISLNWRGRPLEDYETVVNLIGTTTNTKGLKVKARLDRRRYRTGVSVSPAAMDELHLVRATFHGDWNYILKPR
MDK

 

Blast result :
Comments
ISMfu1 is 86% aa similar to ISStau6.
References
1] ISfinder submission (2012)
2] Li,Z.F., Li,X., Liu,H., Liu,X., Han,K., Wu,Z.H., Hu,W., Li,F.F. and Li,Y.Z. (2011) J. Bacteriol. 193 (18), 5015-5016