ISDssp3

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR695875 ND Desulfobacterium sp.
Desulfobacterium sp.
DNA section
IS Length : 1304 bp

Ends


IR Length : 20/27

IRL : GAGATTGTCATAAAACAACTATAACATTTATGTTGCATAATTTTCAAATT
IRR : GAGTCTGTCATAATATTATTGTAACATATTAGCTTGTGTTCGGTAAGATG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTATTTTGGTTTAGTATAATTTT3
TTTCTGTAATTGTAAGTCAATTTAG3

DNA sequence

GAGATTGTCATAAAACAACTATAACATTTATGTTGCATAATTTTCAAATTTGCTCCATGATTAGCTCATGGAAAAAGATAGAATATCAAAACGATTTAAA
ATCCTTGAGCCAATACTCAATGAACGGTTACGCAGGCATTTTGCGGCAGCCGAAGCAATGTCAATTGGCCGCGGTGGGATAACACTCGTTGCCGAAGCCA
CAGGTGTCTCACGCAGAGCAATAACAGAGGGCTGCAAAGAGATAAAAAATATTGGCAAAGAAGCTTTTGAGTCAAAAATTATCCGTAAAAAAGGAGCTGG
AAGAAAGAGAGCCGTTGAAAATCAGCCGTTGCTGCTAAAGGAACTTGAAAAGCTAATTGAGCCATATACGCGCGGGGATCCGGAATCACCTTTACGATGG
ACCTGTAAAAGTGTTCGAAAACTCTCGAAGGAATTAATAAAAAGGGGATTTGAGGCCAGTCATAATTTGGTAGCAGTACTTCTAAAGGACGCGGGCTACA
GTCTTCAATCCAATCAAAAAAGTTTGGAGGGCAGTAGCCATCCGGACAGGAATCGTCAGTTCGAGCATATTAACACTAAGGTCATAGAATTTCAGAAGGA
TGGACACGCTGTTATTTCTGTTGACACCAAAAAGAAGGAACTTGTCGGGCAGTATAAAAATAACGGAAAAGAATTACACCCCATGAAATCACCGGAAAAA
GTTAATGTCCATGATTTTGAAAACAAAAAACTCGGCAAGGTTGCTCCTTTTGGTATTTACGATCTGACACAAAACACCGGATTTATTAACCTGGGTACAG
ATGCTGACACATCTGCATTTGCTGTTGAAAGTATCCGGAAGTGGTGGTTTACCATGGGAAAGCCTTTATATCCTAATTCAAATAAGCTGCTAATCACAGC
AGATAGCGGCGGCAGTAACGGATACCGCAGAAAACTCTGGAAAACGGAATTGCAAAAGCTTTCATCTGAAATTGGGTGTTCTATATCGGTTTGTCACCTT
CCTCCGGGAACAAGTAAGTGGAATAAAATCGAGCATCGATTATTTTCCTTTATCAGCCAAAATTGGCGCGGCAAACCTCTTGTCAGCCATGAAGTTATCA
TTAGTCTAATTTCATCCACAACTACCCAAAAGGGTCTTATTGTAAAATGTGAACTGGATGAAAATAAGTATCCCAAAGGCATACAGGTATCTGATGAAGA
TCTTCTAAAAGTGAATATGAAGATGGATGATTTTCATGGAGAGTGGAATTACACCATCTTACCGAACACAAGCTAATATGTTACAATAATATTATGACAG
ACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1209 bp402 aa681276+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEKDRISKRFKILEPILNERLRRHFAAAEAMSIGRGGITLVAEATGVSRRAITEGCKEIKNIGKEAFESKIIRKKGAGRKRAVENQPLLLKELEKLIEPY
TRGDPESPLRWTCKSVRKLSKELIKRGFEASHNLVAVLLKDAGYSLQSNQKSLEGSSHPDRNRQFEHINTKVIEFQKDGHAVISVDTKKKELVGQYKNNG
KELHPMKSPEKVNVHDFENKKLGKVAPFGIYDLTQNTGFINLGTDADTSAFAVESIRKWWFTMGKPLYPNSNKLLITADSGGSNGYRRKLWKTELQKLSS
EIGCSISVCHLPPGTSKWNKIEHRLFSFISQNWRGKPLVSHEVIISLISSTTTQKGLIVKCELDENKYPKGIQVSDEDLLKVNMKMDDFHGEWNYTILPN
TS

 

Blast result :
Comments
ISDssp3 is 76% aa similar to ISDssp1. This IS is found in several clones of Uncultured Desulfobacterium sp.
References
1] ISfinder submission (2012)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137