ISDpr8

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ADZZ01000006 ND Delta proteobacterium
Delta proteobacterium NaphS2
DNA section
IS Length : 1335 bp

Ends


IR Length : 20/28

IRL : GTCAGCAAGTTAAAATAACATGTGCAAATCTGTTGACTTTTACTCTAATT
IRR : GCGTCCAAGTCACAATAACATGGACAAACGCTATGCCTCATACATAACTT

Insertion site


Left flankDirect repeatRight flankDR Length
CCAATATCAGTGTAATTAGGCAGTTGCAAATC0
TGGCTTTCTGTCCACTTAAATATGCAGATAGCCAT3
AACCAAAAATGGAAGTAAAGTCAACAACGATCCAA3
ATGATGTCAAAGCCGTAAGTGCATTTATCGGGGGC3

DNA sequence

GTCAGCAAGTTAAAATAACATGTGCAAATCTGTTGACTTTTACTCTAATTCCATACTACAGTCAACTGCATGGAAACTCAACAGAAGGAAGCCCTGATTA
ATCAGGTTAAACAAAGGTTCCAGTTGATGGTTGCCCACTTGTCTGAGAAGGACAAAAGAATATGGGCTGCATCAGAAGCTAATACAATTGGCAGAGGAGG
CGATACCATTGTTTGCCAGGCAACTGGTATATCACGCGTGACCATCGGAAGAGGAAAAAAGGAACTAACGGGTAAGGCAGATGGGGTAAAGCGACGTATT
CGGAAACCTGGTGGTGGTCGTAAACGCTTGTCGGACAAAAACCCGGCATTGATTAAAGACCTTGATATGCTGATAGATCCGCTTACCAGAGGTGATCCGG
AGTCACCTCTCAGATGGACCTGCAAAAGCACTTATAAGCTATCAGAAGCCCTTCGAAAAAAAGGGCATAATGTATCCCAAAAGACTGTATACTTGATGCT
CCAGAAAATGGGTTACAGCATGCAGGCCAATAGAAAAGTTAAAGAGGGGAAACAAAATCCGGATCGAGATGCGCAGTTCAATTTTATATACAAGCAGGTT
AAAGATTTTCAAAACGATGGTCAGCCCGTTATTTCAGTCGATGCCAAAAAAAAGGAAAACATTGGCCAATATAAAAACAACGGTATGGAGTGGGAACCCG
CTGGCCAGCCAACCAATGTGAACACATATGACTTTCCGGACAAAGAAAAAGGAAAAGCTTGTCCTTACGGTATCTATGATTTGACACGTAATGAGGGATG
GGTAAGCCTCGGTATCAGTCGAGATACAGCACAATTTGCAGTTGAAAGCATTCGGCGGTGGTGGAGTGAAATGGGTTGTTTCAGATATCCCGTTGCTACC
CGGTTGCTTATTACAGCAGACGGCGGCGGTAGCAACGGATGGCGAGTTCGTTTGTGGAAGAAAGAGATTCAGTCTCTGGCAAATGAATTGGGAATCTCGA
TCAGCATCTGTCATTTTCCGCCCGGGACAAGCAAATGGAACAAAATCGAGCATCAAATGTTTTCTTTCATAAGCAAAAACTGGCGCGGGCGGCCATTGGA
CAGTCTGGGAACAATAATTAACCTGATTTCAAACACTACGACCAAAAAAGGCTTGAAAATAGAAGCTAATATTGATGATGCGCAATATGAAAAGGGTCTT
AAAGTAGGAGATGATGAAATGGCCCAGCTGAACATTGAGCGAGCAAGTTTTCATGGCGAATGGAATTACAAAATAATGCCTCAGGAAGTTATGTATGAGG
CATAGCGTTTGTCCATGTTATTGTGACTTGGACGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa701305+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

METQQKEALINQVKQRFQLMVAHLSEKDKRIWAASEANTIGRGGDTIVCQATGISRVTIGRGKKELTGKADGVKRRIRKPGGGRKRLSDKNPALIKDLDM
LIDPLTRGDPESPLRWTCKSTYKLSEALRKKGHNVSQKTVYLMLQKMGYSMQANRKVKEGKQNPDRDAQFNFIYKQVKDFQNDGQPVISVDAKKKENIGQ
YKNNGMEWEPAGQPTNVNTYDFPDKEKGKACPYGIYDLTRNEGWVSLGISRDTAQFAVESIRRWWSEMGCFRYPVATRLLITADGGGSNGWRVRLWKKEI
QSLANELGISISICHFPPGTSKWNKIEHQMFSFISKNWRGRPLDSLGTIINLISNTTTKKGLKIEANIDDAQYEKGLKVGDDEMAQLNIERASFHGEWNY
KIMPQEVMYEA

 

Blast result :
Comments
ISDpr8 is 74% aa similar to ISCap1.
References
1] ISfinder submission (2012)
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.