ISDpr8
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ADZZ01000006 | ND | Delta proteobacterium | Delta proteobacterium NaphS2 |
DNA section
IS Length : 1335 bp
Ends
IR Length : 20/28
IRL : GTCAGCAAGTTAAAATAACATGTGCAAATCTGTTGACTTTTACTCTAATT
IRR : GCGTCCAAGTCACAATAACATGGACAAACGCTATGCCTCATACATAACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCAATATCAGTGTAA | TTAGGCAGTTGCAAATC | 0 | |
TGGCTTTCTGTCCAC | TTA | AATATGCAGATAGCCAT | 3 |
AACCAAAAATGGAAG | TAA | AGTCAACAACGATCCAA | 3 |
ATGATGTCAAAGCCG | TAA | GTGCATTTATCGGGGGC | 3 |
DNA sequence
GTCAGCAAGTTAAAATAACATGTGCAAATCTGTTGACTTTTACTCTAATTCCATACTACAGTCAACTGCATGGAAACTCAACAGAAGGAAGCCCTGATTA
ATCAGGTTAAACAAAGGTTCCAGTTGATGGTTGCCCACTTGTCTGAGAAGGACAAAAGAATATGGGCTGCATCAGAAGCTAATACAATTGGCAGAGGAGG
CGATACCATTGTTTGCCAGGCAACTGGTATATCACGCGTGACCATCGGAAGAGGAAAAAAGGAACTAACGGGTAAGGCAGATGGGGTAAAGCGACGTATT
CGGAAACCTGGTGGTGGTCGTAAACGCTTGTCGGACAAAAACCCGGCATTGATTAAAGACCTTGATATGCTGATAGATCCGCTTACCAGAGGTGATCCGG
AGTCACCTCTCAGATGGACCTGCAAAAGCACTTATAAGCTATCAGAAGCCCTTCGAAAAAAAGGGCATAATGTATCCCAAAAGACTGTATACTTGATGCT
CCAGAAAATGGGTTACAGCATGCAGGCCAATAGAAAAGTTAAAGAGGGGAAACAAAATCCGGATCGAGATGCGCAGTTCAATTTTATATACAAGCAGGTT
AAAGATTTTCAAAACGATGGTCAGCCCGTTATTTCAGTCGATGCCAAAAAAAAGGAAAACATTGGCCAATATAAAAACAACGGTATGGAGTGGGAACCCG
CTGGCCAGCCAACCAATGTGAACACATATGACTTTCCGGACAAAGAAAAAGGAAAAGCTTGTCCTTACGGTATCTATGATTTGACACGTAATGAGGGATG
GGTAAGCCTCGGTATCAGTCGAGATACAGCACAATTTGCAGTTGAAAGCATTCGGCGGTGGTGGAGTGAAATGGGTTGTTTCAGATATCCCGTTGCTACC
CGGTTGCTTATTACAGCAGACGGCGGCGGTAGCAACGGATGGCGAGTTCGTTTGTGGAAGAAAGAGATTCAGTCTCTGGCAAATGAATTGGGAATCTCGA
TCAGCATCTGTCATTTTCCGCCCGGGACAAGCAAATGGAACAAAATCGAGCATCAAATGTTTTCTTTCATAAGCAAAAACTGGCGCGGGCGGCCATTGGA
CAGTCTGGGAACAATAATTAACCTGATTTCAAACACTACGACCAAAAAAGGCTTGAAAATAGAAGCTAATATTGATGATGCGCAATATGAAAAGGGTCTT
AAAGTAGGAGATGATGAAATGGCCCAGCTGAACATTGAGCGAGCAAGTTTTCATGGCGAATGGAATTACAAAATAATGCCTCAGGAAGTTATGTATGAGG
CATAGCGTTTGTCCATGTTATTGTGACTTGGACGC
ATCAGGTTAAACAAAGGTTCCAGTTGATGGTTGCCCACTTGTCTGAGAAGGACAAAAGAATATGGGCTGCATCAGAAGCTAATACAATTGGCAGAGGAGG
CGATACCATTGTTTGCCAGGCAACTGGTATATCACGCGTGACCATCGGAAGAGGAAAAAAGGAACTAACGGGTAAGGCAGATGGGGTAAAGCGACGTATT
CGGAAACCTGGTGGTGGTCGTAAACGCTTGTCGGACAAAAACCCGGCATTGATTAAAGACCTTGATATGCTGATAGATCCGCTTACCAGAGGTGATCCGG
AGTCACCTCTCAGATGGACCTGCAAAAGCACTTATAAGCTATCAGAAGCCCTTCGAAAAAAAGGGCATAATGTATCCCAAAAGACTGTATACTTGATGCT
CCAGAAAATGGGTTACAGCATGCAGGCCAATAGAAAAGTTAAAGAGGGGAAACAAAATCCGGATCGAGATGCGCAGTTCAATTTTATATACAAGCAGGTT
AAAGATTTTCAAAACGATGGTCAGCCCGTTATTTCAGTCGATGCCAAAAAAAAGGAAAACATTGGCCAATATAAAAACAACGGTATGGAGTGGGAACCCG
CTGGCCAGCCAACCAATGTGAACACATATGACTTTCCGGACAAAGAAAAAGGAAAAGCTTGTCCTTACGGTATCTATGATTTGACACGTAATGAGGGATG
GGTAAGCCTCGGTATCAGTCGAGATACAGCACAATTTGCAGTTGAAAGCATTCGGCGGTGGTGGAGTGAAATGGGTTGTTTCAGATATCCCGTTGCTACC
CGGTTGCTTATTACAGCAGACGGCGGCGGTAGCAACGGATGGCGAGTTCGTTTGTGGAAGAAAGAGATTCAGTCTCTGGCAAATGAATTGGGAATCTCGA
TCAGCATCTGTCATTTTCCGCCCGGGACAAGCAAATGGAACAAAATCGAGCATCAAATGTTTTCTTTCATAAGCAAAAACTGGCGCGGGCGGCCATTGGA
CAGTCTGGGAACAATAATTAACCTGATTTCAAACACTACGACCAAAAAAGGCTTGAAAATAGAAGCTAATATTGATGATGCGCAATATGAAAAGGGTCTT
AAAGTAGGAGATGATGAAATGGCCCAGCTGAACATTGAGCGAGCAAGTTTTCATGGCGAATGGAATTACAAAATAATGCCTCAGGAAGTTATGTATGAGG
CATAGCGTTTGTCCATGTTATTGTGACTTGGACGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 70 | 1305 | + | No |
Chemistry : Unknow
ORF sequence :
METQQKEALINQVKQRFQLMVAHLSEKDKRIWAASEANTIGRGGDTIVCQATGISRVTIGRGKKELTGKADGVKRRIRKPGGGRKRLSDKNPALIKDLDM
LIDPLTRGDPESPLRWTCKSTYKLSEALRKKGHNVSQKTVYLMLQKMGYSMQANRKVKEGKQNPDRDAQFNFIYKQVKDFQNDGQPVISVDAKKKENIGQ
YKNNGMEWEPAGQPTNVNTYDFPDKEKGKACPYGIYDLTRNEGWVSLGISRDTAQFAVESIRRWWSEMGCFRYPVATRLLITADGGGSNGWRVRLWKKEI
QSLANELGISISICHFPPGTSKWNKIEHQMFSFISKNWRGRPLDSLGTIINLISNTTTKKGLKIEANIDDAQYEKGLKVGDDEMAQLNIERASFHGEWNY
KIMPQEVMYEA
LIDPLTRGDPESPLRWTCKSTYKLSEALRKKGHNVSQKTVYLMLQKMGYSMQANRKVKEGKQNPDRDAQFNFIYKQVKDFQNDGQPVISVDAKKKENIGQ
YKNNGMEWEPAGQPTNVNTYDFPDKEKGKACPYGIYDLTRNEGWVSLGISRDTAQFAVESIRRWWSEMGCFRYPVATRLLITADGGGSNGWRVRLWKKEI
QSLANELGISISICHFPPGTSKWNKIEHQMFSFISKNWRGRPLDSLGTIINLISNTTTKKGLKIEANIDDAQYEKGLKVGDDEMAQLNIERASFHGEWNY
KIMPQEVMYEA
Blast result :
Comments
ISDpr8 is 74% aa similar to ISCap1.
References
1] ISfinder submission (2012)
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.
2] DeBoy,R., Durkin,A.S., Methe,B. and Young,N. (2010) Direct submission GenBank.