ISDssp2
- Family ISAzo13
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR695872 | ND | Desulfobacterium sp. | Desulfobacterium sp. |
DNA section
IS Length : 1318 bp
Ends
IR Length : 21/30
IRL : GTAACTTAGCAATAATAAATTGAACAATTATGTTGACATTTAGCTACGGT
IRR : GTGGTTTAGAAAATATAAGCTGAACATTTAGCATAATGGCCTTGGTTTTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACATAACCG | TAA | GCCCAGTCTATC | 3 |
DNA sequence
GTAACTTAGCAATAATAAATTGAACAATTATGTTGACATTTAGCTACGGTAATGATATGCGTTATGTATGTCAAACACTGTTGAGAAAATCAAGGTAAAG
TATGGGTATTTACGTTCACATTTAGATGAGAAGGTTCTTCGTCTATGGGCGGCGGTAGAAGCACAGTCACTAGGCAGAGGGGGTATCTCCCAAGTGTCGG
AGGCTACTTCATTATCAAGAACGACTATATATGTGGGGATATCCGAACTTAAATCGGGAGGACCGGATATTGACTCGCGATTACCCGGAAGGATCAGAAG
AACAGGCGGCGGCAGAAAGAAGCTGAAAGAAAAAGATCCTTCCTTGCTTCAGGATCTTGATAAGTTATTAGAGCCTGCCACTCGTGGAGATCCTGAGACG
CCCCTTCGCTGGACATGCAAGAGCACGACGAAACTTGCCGAGGAACTGACAGCAAGAGGTCACCCGGTAAGCCAGAGGACGGTTTGTGATCTATTGGATG
AATTAGGTTACAGCCTTCAGGCAAATCGTAAAACCAAAGAAGGTTCATCGCATCCCGACCGTGATAAGCAGTTTATGCATATTTCCGATAAGGTTAAGGA
GCTTCAGTCTATTGGCCAGCCGGTCATTTCTGTAGATGCGAAGAAGAAAGAAAAGATTGGCGAATTCAAGAACGGTGGCCAGGAATGGGAGAAGAAAGGG
TCGCCCGCAGAAGTTAATGTTTATGATTTTGTTGACCCTGTGCTTGGCAAAGTTACCCCTTACGGTGTTTACGATATAACCACTAACAAGGGCTGGGTAA
ATGTGGGAATTGATCACGACACATCGGAATTTGCCGTAGAGTCGATTCGCCGTTGGTGGCGTGAGATGGGCAGTCCCTTATATCCTAACGCCAATCAATT
GCTGATTACCGCTGATGGGGGTGGCAGTAATGGCAGTCGCATAAGGCTTTGGAAGCTGGAATTGCAGAAACTTGCTGACGAATTAGGTATGACAATTAAT
GTTTGTCATTTCCCTCCCGGTACCAGTAAATGGAATAAAATCGAGCATAAGATGTTCAGCTTTATATCGCAGAACCGGCGGGGCCGTCCATTGATCACCC
GGGAAGTGGTCGTCAATCTTATCGGCAACACAAGAACGAAAAAAGGTCTTGAGATTACAGCCAAATTAGACACCAATTCCTACAAGACCGGCATCAAAGT
CTCTGATGAAGAACTCCGAAAGATTGCTATCGAGAGGGATGGTTTCCATGGAGAGTGGAATTATAAAATAAAACCAAGGCCATTATGCTAAATGTTCAGC
TTATATTTTCTAAACCAC
TATGGGTATTTACGTTCACATTTAGATGAGAAGGTTCTTCGTCTATGGGCGGCGGTAGAAGCACAGTCACTAGGCAGAGGGGGTATCTCCCAAGTGTCGG
AGGCTACTTCATTATCAAGAACGACTATATATGTGGGGATATCCGAACTTAAATCGGGAGGACCGGATATTGACTCGCGATTACCCGGAAGGATCAGAAG
AACAGGCGGCGGCAGAAAGAAGCTGAAAGAAAAAGATCCTTCCTTGCTTCAGGATCTTGATAAGTTATTAGAGCCTGCCACTCGTGGAGATCCTGAGACG
CCCCTTCGCTGGACATGCAAGAGCACGACGAAACTTGCCGAGGAACTGACAGCAAGAGGTCACCCGGTAAGCCAGAGGACGGTTTGTGATCTATTGGATG
AATTAGGTTACAGCCTTCAGGCAAATCGTAAAACCAAAGAAGGTTCATCGCATCCCGACCGTGATAAGCAGTTTATGCATATTTCCGATAAGGTTAAGGA
GCTTCAGTCTATTGGCCAGCCGGTCATTTCTGTAGATGCGAAGAAGAAAGAAAAGATTGGCGAATTCAAGAACGGTGGCCAGGAATGGGAGAAGAAAGGG
TCGCCCGCAGAAGTTAATGTTTATGATTTTGTTGACCCTGTGCTTGGCAAAGTTACCCCTTACGGTGTTTACGATATAACCACTAACAAGGGCTGGGTAA
ATGTGGGAATTGATCACGACACATCGGAATTTGCCGTAGAGTCGATTCGCCGTTGGTGGCGTGAGATGGGCAGTCCCTTATATCCTAACGCCAATCAATT
GCTGATTACCGCTGATGGGGGTGGCAGTAATGGCAGTCGCATAAGGCTTTGGAAGCTGGAATTGCAGAAACTTGCTGACGAATTAGGTATGACAATTAAT
GTTTGTCATTTCCCTCCCGGTACCAGTAAATGGAATAAAATCGAGCATAAGATGTTCAGCTTTATATCGCAGAACCGGCGGGGCCGTCCATTGATCACCC
GGGAAGTGGTCGTCAATCTTATCGGCAACACAAGAACGAAAAAAGGTCTTGAGATTACAGCCAAATTAGACACCAATTCCTACAAGACCGGCATCAAAGT
CTCTGATGAAGAACTCCGAAAGATTGCTATCGAGAGGGATGGTTTCCATGGAGAGTGGAATTATAAAATAAAACCAAGGCCATTATGCTAAATGTTCAGC
TTATATTTTCTAAACCAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 68 | 1291 | + | No |
Chemistry : Unknow
ORF sequence :
MSNTVEKIKVKYGYLRSHLDEKVLRLWAAVEAQSLGRGGISQVSEATSLSRTTIYVGISELKSGGPDIDSRLPGRIRRTGGGRKKLKEKDPSLLQDLDKL
LEPATRGDPETPLRWTCKSTTKLAEELTARGHPVSQRTVCDLLDELGYSLQANRKTKEGSSHPDRDKQFMHISDKVKELQSIGQPVISVDAKKKEKIGEF
KNGGQEWEKKGSPAEVNVYDFVDPVLGKVTPYGVYDITTNKGWVNVGIDHDTSEFAVESIRRWWREMGSPLYPNANQLLITADGGGSNGSRIRLWKLELQ
KLADELGMTINVCHFPPGTSKWNKIEHKMFSFISQNRRGRPLITREVVVNLIGNTRTKKGLEITAKLDTNSYKTGIKVSDEELRKIAIERDGFHGEWNYK
IKPRPLC
LEPATRGDPETPLRWTCKSTTKLAEELTARGHPVSQRTVCDLLDELGYSLQANRKTKEGSSHPDRDKQFMHISDKVKELQSIGQPVISVDAKKKEKIGEF
KNGGQEWEKKGSPAEVNVYDFVDPVLGKVTPYGVYDITTNKGWVNVGIDHDTSEFAVESIRRWWREMGSPLYPNANQLLITADGGGSNGSRIRLWKLELQ
KLADELGMTINVCHFPPGTSKWNKIEHKMFSFISQNRRGRPLITREVVVNLIGNTRTKKGLEITAKLDTNSYKTGIKVSDEELRKIAIERDGFHGEWNYK
IKPRPLC
Blast result :
Comments
ISDssp2 is 79% aa similar to ISCap1.
This IS is found in a clone of Uncultured Desulfobacterium sp.
This IS is found in a clone of Uncultured Desulfobacterium sp.
References
1] ISfinder submission (2012)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.