ISDssp2

  • Family ISAzo13
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR695872 ND Desulfobacterium sp.
Desulfobacterium sp.
DNA section
IS Length : 1318 bp

Ends


IR Length : 21/30

IRL : GTAACTTAGCAATAATAAATTGAACAATTATGTTGACATTTAGCTACGGT
IRR : GTGGTTTAGAAAATATAAGCTGAACATTTAGCATAATGGCCTTGGTTTTA

Insertion site


Left flankDirect repeatRight flankDR Length
AACATAACCGTAAGCCCAGTCTATC3

DNA sequence

GTAACTTAGCAATAATAAATTGAACAATTATGTTGACATTTAGCTACGGTAATGATATGCGTTATGTATGTCAAACACTGTTGAGAAAATCAAGGTAAAG
TATGGGTATTTACGTTCACATTTAGATGAGAAGGTTCTTCGTCTATGGGCGGCGGTAGAAGCACAGTCACTAGGCAGAGGGGGTATCTCCCAAGTGTCGG
AGGCTACTTCATTATCAAGAACGACTATATATGTGGGGATATCCGAACTTAAATCGGGAGGACCGGATATTGACTCGCGATTACCCGGAAGGATCAGAAG
AACAGGCGGCGGCAGAAAGAAGCTGAAAGAAAAAGATCCTTCCTTGCTTCAGGATCTTGATAAGTTATTAGAGCCTGCCACTCGTGGAGATCCTGAGACG
CCCCTTCGCTGGACATGCAAGAGCACGACGAAACTTGCCGAGGAACTGACAGCAAGAGGTCACCCGGTAAGCCAGAGGACGGTTTGTGATCTATTGGATG
AATTAGGTTACAGCCTTCAGGCAAATCGTAAAACCAAAGAAGGTTCATCGCATCCCGACCGTGATAAGCAGTTTATGCATATTTCCGATAAGGTTAAGGA
GCTTCAGTCTATTGGCCAGCCGGTCATTTCTGTAGATGCGAAGAAGAAAGAAAAGATTGGCGAATTCAAGAACGGTGGCCAGGAATGGGAGAAGAAAGGG
TCGCCCGCAGAAGTTAATGTTTATGATTTTGTTGACCCTGTGCTTGGCAAAGTTACCCCTTACGGTGTTTACGATATAACCACTAACAAGGGCTGGGTAA
ATGTGGGAATTGATCACGACACATCGGAATTTGCCGTAGAGTCGATTCGCCGTTGGTGGCGTGAGATGGGCAGTCCCTTATATCCTAACGCCAATCAATT
GCTGATTACCGCTGATGGGGGTGGCAGTAATGGCAGTCGCATAAGGCTTTGGAAGCTGGAATTGCAGAAACTTGCTGACGAATTAGGTATGACAATTAAT
GTTTGTCATTTCCCTCCCGGTACCAGTAAATGGAATAAAATCGAGCATAAGATGTTCAGCTTTATATCGCAGAACCGGCGGGGCCGTCCATTGATCACCC
GGGAAGTGGTCGTCAATCTTATCGGCAACACAAGAACGAAAAAAGGTCTTGAGATTACAGCCAAATTAGACACCAATTCCTACAAGACCGGCATCAAAGT
CTCTGATGAAGAACTCCGAAAGATTGCTATCGAGAGGGATGGTTTCCATGGAGAGTGGAATTATAAAATAAAACCAAGGCCATTATGCTAAATGTTCAGC
TTATATTTTCTAAACCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1224 bp407 aa681291+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSNTVEKIKVKYGYLRSHLDEKVLRLWAAVEAQSLGRGGISQVSEATSLSRTTIYVGISELKSGGPDIDSRLPGRIRRTGGGRKKLKEKDPSLLQDLDKL
LEPATRGDPETPLRWTCKSTTKLAEELTARGHPVSQRTVCDLLDELGYSLQANRKTKEGSSHPDRDKQFMHISDKVKELQSIGQPVISVDAKKKEKIGEF
KNGGQEWEKKGSPAEVNVYDFVDPVLGKVTPYGVYDITTNKGWVNVGIDHDTSEFAVESIRRWWREMGSPLYPNANQLLITADGGGSNGSRIRLWKLELQ
KLADELGMTINVCHFPPGTSKWNKIEHKMFSFISQNRRGRPLITREVVVNLIGNTRTKKGLEITAKLDTNSYKTGIKVSDEELRKIAIERDGFHGEWNYK
IKPRPLC

 

Blast result :
Comments
ISDssp2 is 79% aa similar to ISCap1.
This IS is found in a clone of Uncultured Desulfobacterium sp.
References
1] ISfinder submission (2012)
2] Bergmann,F., Selesi,D., Weinmaier,T., Tischler,P., Rattei,T. and Meckenstock,R.U. (2011) Environ. Microbiol. 13 (5), 1125-1137.