ISCasp1
- Family ISAzo13
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_019751 | ND | Calothrix sp. | Calothrix sp. PCC 6303 |
DNA section
IS Length : 1353 bp
Ends
IR Length : 23/29
IRL : GGAGTTATGTAAAAATAAGTTGCGTAACTTCAAGATAGCAAACAAGTGGT
IRR : GGAGTCGTGTAAAAATAAATTGATAAACTACGTTGAATTTCTAGGGCTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATAACTTCAGCGT | TTA | ACTTGGTAGT | 3 |
| CCTGTTTTTTAGCC | TAA | AGGAGTACTT | 3 |
| GCTTTGGTGAATCC | TTA | TTACCAGAAC | 3 |
DNA sequence
GGAGTTATGTAAAAATAAGTTGCGTAACTTCAAGATAGCAAACAAGTGGTTGCCAATAAATTTTATGCTGGATTATGTCAACAGTAAGACAGTATAAAAA
TCATGCGCAAACAGGGTGCAGTAATCAATATTAGAGAAAAATACAGAGAAATAAGCCCTTACTTAAATGAACGAACACGTAGGATTTGGGCAGGAACAGA
GGCTTTGGGGTTAGGATATGGGGGAATTACAGCAGTATCAGAGGCAACAGGTTTAAGTCAAAATACCATTCGCTCAGGCATAGAAGAATTACTTTTGTCG
AGTGAAAATCCGACGCAAACGGCAAGGATACGCAGTCGTGGTGGTGGACGTAAAAAATTGACGATGGCAGATAAAACTTTAAAGCAAGATTTAGACTCTT
TGGTAGAACCAACAAGCCGTGGAGACCCAGAATCACCCCTGCGTTGGAGTTGTAAGAGTTTAGCAAAACTAGCTTCAGAGTTAAAAAACATGGGACATAA
GGTATGCAGCAAAACTGTTTCAACCTTACTTAAAAGTATGGGCTATAGCTTACAAGGAAATCGCAAAACTCAGGAAGGCAAACATAACCCTGACAGAGAC
CAGCAATTTGTTCACATTAATAGAACTGTACGACAGTTCCAAAATCAGAAACATCCAGTAATTTCAGTGGACACAAAGAAGAAAGAATTAATCGGTAACT
ATAAAAATTCTGGCGTGGAGTGGGAACCTTCTTCGTCACCCACTCAAGTCAAAGTTCACGACTTTGTTGACCCGGAGTTAGGCAAAGCAATACCTTACGG
CGTATACGATTTACAACATAATCAAGCTTGGGTAAGTGTAGGTATTGACCACGACACAGCATCGTTTGCAGTCGAGACAATACGGAATTGGTGGTTCAAT
ATGGGAAAACCATTATATCCAGATAGTCAGCATCTTCTGATTACAGCCGATTGCGGAGGTAGTAATAGCTACCGTAGCCGCCTCTGGAAACTGAAATTAC
AAGAGTTTGCGGAGCAAACAGGATTAACTGTTCACGTTTGCCATTTTCCACCTGGAACTAGCAAATGGAATCGAATCGAGCATCGATTATTCTGCCATAT
TTCTCAAAACTGGCGAGGACGACCCTTGGATAGCTTAATGGTGATTGTAAGCTTGATTGGTAATACAAGTACAAAACATGGCTTAACAGTTCACGCACAA
GTAGACCCAAATCAGTATCAAATAGGTATTAAAGTATCCGATGAAGACTTCAATGCTATTGCCATCACAAAAGATACTTTTCATGGTGAATGGAACTATC
AAATTAGCCCTAGAAATTCAACGTAGTTTATCAATTTATTTTTACACGACTCC
TCATGCGCAAACAGGGTGCAGTAATCAATATTAGAGAAAAATACAGAGAAATAAGCCCTTACTTAAATGAACGAACACGTAGGATTTGGGCAGGAACAGA
GGCTTTGGGGTTAGGATATGGGGGAATTACAGCAGTATCAGAGGCAACAGGTTTAAGTCAAAATACCATTCGCTCAGGCATAGAAGAATTACTTTTGTCG
AGTGAAAATCCGACGCAAACGGCAAGGATACGCAGTCGTGGTGGTGGACGTAAAAAATTGACGATGGCAGATAAAACTTTAAAGCAAGATTTAGACTCTT
TGGTAGAACCAACAAGCCGTGGAGACCCAGAATCACCCCTGCGTTGGAGTTGTAAGAGTTTAGCAAAACTAGCTTCAGAGTTAAAAAACATGGGACATAA
GGTATGCAGCAAAACTGTTTCAACCTTACTTAAAAGTATGGGCTATAGCTTACAAGGAAATCGCAAAACTCAGGAAGGCAAACATAACCCTGACAGAGAC
CAGCAATTTGTTCACATTAATAGAACTGTACGACAGTTCCAAAATCAGAAACATCCAGTAATTTCAGTGGACACAAAGAAGAAAGAATTAATCGGTAACT
ATAAAAATTCTGGCGTGGAGTGGGAACCTTCTTCGTCACCCACTCAAGTCAAAGTTCACGACTTTGTTGACCCGGAGTTAGGCAAAGCAATACCTTACGG
CGTATACGATTTACAACATAATCAAGCTTGGGTAAGTGTAGGTATTGACCACGACACAGCATCGTTTGCAGTCGAGACAATACGGAATTGGTGGTTCAAT
ATGGGAAAACCATTATATCCAGATAGTCAGCATCTTCTGATTACAGCCGATTGCGGAGGTAGTAATAGCTACCGTAGCCGCCTCTGGAAACTGAAATTAC
AAGAGTTTGCGGAGCAAACAGGATTAACTGTTCACGTTTGCCATTTTCCACCTGGAACTAGCAAATGGAATCGAATCGAGCATCGATTATTCTGCCATAT
TTCTCAAAACTGGCGAGGACGACCCTTGGATAGCTTAATGGTGATTGTAAGCTTGATTGGTAATACAAGTACAAAACATGGCTTAACAGTTCACGCACAA
GTAGACCCAAATCAGTATCAAATAGGTATTAAAGTATCCGATGAAGACTTCAATGCTATTGCCATCACAAAAGATACTTTTCATGGTGAATGGAACTATC
AAATTAGCCCTAGAAATTCAACGTAGTTTATCAATTTATTTTTACACGACTCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1224 bp | 407 aa | 103 | 1326 | + | No |
Chemistry : Unknow
ORF sequence :
MRKQGAVINIREKYREISPYLNERTRRIWAGTEALGLGYGGITAVSEATGLSQNTIRSGIEELLLSSENPTQTARIRSRGGGRKKLTMADKTLKQDLDSL
VEPTSRGDPESPLRWSCKSLAKLASELKNMGHKVCSKTVSTLLKSMGYSLQGNRKTQEGKHNPDRDQQFVHINRTVRQFQNQKHPVISVDTKKKELIGNY
KNSGVEWEPSSSPTQVKVHDFVDPELGKAIPYGVYDLQHNQAWVSVGIDHDTASFAVETIRNWWFNMGKPLYPDSQHLLITADCGGSNSYRSRLWKLKLQ
EFAEQTGLTVHVCHFPPGTSKWNRIEHRLFCHISQNWRGRPLDSLMVIVSLIGNTSTKHGLTVHAQVDPNQYQIGIKVSDEDFNAIAITKDTFHGEWNYQ
ISPRNST
VEPTSRGDPESPLRWSCKSLAKLASELKNMGHKVCSKTVSTLLKSMGYSLQGNRKTQEGKHNPDRDQQFVHINRTVRQFQNQKHPVISVDTKKKELIGNY
KNSGVEWEPSSSPTQVKVHDFVDPELGKAIPYGVYDLQHNQAWVSVGIDHDTASFAVETIRNWWFNMGKPLYPDSQHLLITADCGGSNSYRSRLWKLKLQ
EFAEQTGLTVHVCHFPPGTSKWNRIEHRLFCHISQNWRGRPLDSLMVIVSLIGNTSTKHGLTVHAQVDPNQYQIGIKVSDEDFNAIAITKDTFHGEWNYQ
ISPRNST
Blast result :
Comments
ISCasp1 is 77% aa similar to ISNsp4.
References
1] ISfinder submission (2012)
2] Gugger,M., Coursin,T., Rippka,R., Tandeau De Marsac,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T. and Kerfeld,C.A. (2012) Direct submission GenBank.
2] Gugger,M., Coursin,T., Rippka,R., Tandeau De Marsac,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Chen,A., Kyrpides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Pagani,I., Pati,A., Goodwin,L., Nordberg,H.P., Cantor,M.N., Hua,S.X., Woyke,T. and Kerfeld,C.A. (2012) Direct submission GenBank.