ISPa46

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JX185414 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1337 bp

Ends


IR Length : 24/28

IRL : GAGGGTGTCCGAATTTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTC
IRR : GAGGGTGTGCAGAATTTTGTGTAACCGGGGTTAGGGGTTACTGCTGCGGC

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GAGGGTGTCCGAATTTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTCCGAACCGGAGACACCATGAGCAAGACGCAACATCCCATCACTGACGAGCT
GCTGGATCAGCTCTTGGCCAACTACCAGAATCCTGAAGACCTGATCGGTGCTGACGGCATCCTCAAGCAACTGACCAAGAAGCTGGTTGAGCGTGCGCTG
GATGCTGAACTGACCCACCACCTGGGCCACGACAAGCATCAGCCGGTCAGCAACTCGACTGGCAACACCCGCAACGGCTTCAGCCGCAAGAAGCTCAAGG
GTGAGTTCGGCGAACTACCCATCGAAGTGCCGCGCGACCGGCATGGCACTTTCGATCCGCAGATCGTCGAGAAGCACCAGACCCGCTGGACGGGCTTCGA
CGACAAGATCCTCTCACTCTATGCCCGCGGCATGACTGTGCGCGAGATCCAGGCGCACTTGCAGGAAATGTACGGTGCCGGGGTGTCGCCCAGCCTGATC
TCCTCGGTGACCGATGCCGTAGCCGATGAAGTGAAGGCCTGGCAGTCGCGCCCGCTCGATGCGGTCTACCCCATCGTCTACCTCGACTGCATCCACACCA
AGGTGCGCGAAGGCGCCGTGCGAGTGAAGGCGGTGTATCTGGCGTTGGGTATCAATCTGGCTGGCGAGAAGGAAATCCTCGGCCTATGGATCGCCCAGAA
CGAGGGCGCCAAGTTCTGGTTACAGGTGGTAACCGAGCTGCGTAACCGTGGCGTGCAGGACATCTTCGTCGCCTGCGTGGATGGCCTGAAGGGCTTCCCC
GAGGCTATCGAAGCAGTGTTCCCGCACACCAGCGTGCAGCTGTGCATCGTGCACATGGTCAGGCACAGCCTGAACTATGTGTCGTGGAAACGGCGGGCTG
AAGTGGCTACTGACCTGAAGCGAATTTACCAGTCCAGCACGGCAGACGAGGCCGAACTGCGCCTCGGTGAGTTCGAGGCCAAGTGGGACGATGACTACCT
GCCAATTGGTCAGTCCTGGCGGCGCAACTGGCCACGTATCACGCCGTTCTTCGACTTCCCGCCGGAGATCCGCAAGGTGATCTACACCACCAACGCCATC
GAATCGGTGAACATGAGCCTGCGCAAGATCACCAAGAATCGCGGATCGTTTCCCAGCGACGAGGCGCTGCTGAAACTGTTCTACCTGGCGCTACGCAACA
TCAGCAAAAAATGGACGATGCCGATCCGCGACTGGAAGGCGGCGCTGACGCGCTTTACGATTAGCTACGAAGACCGGCTGCCGCAGCAGTAACCCCTAAC
CCCGGTTACACAAAATTCTGCACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa661292+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKTQHPITDELLDQLLANYQNPEDLIGADGILKQLTKKLVERALDAELTHHLGHDKHQPVSNSTGNTRNGFSRKKLKGEFGELPIEVPRDRHGTFDPQI
VEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAGVSPSLISSVTDAVADEVKAWQSRPLDAVYPIVYLDCIHTKVREGAVRVKAVYLALGINLAG
EKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDGLKGFPEAIEAVFPHTSVQLCIVHMVRHSLNYVSWKRRAEVATDLKRIYQSSTADEAELRL
GEFEAKWDDDYLPIGQSWRRNWPRITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ

 

Blast result :
Comments
ISPa46 is 97% aa similar to ISPa1328.
This strain was obtained from sputum of CF patient.
References
1] Seydina Diene (2012) Direct ISfinder submission.