ISPa46
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JX185414 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1337 bp
Ends
IR Length : 24/28
IRL : GAGGGTGTCCGAATTTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTC
IRR : GAGGGTGTGCAGAATTTTGTGTAACCGGGGTTAGGGGTTACTGCTGCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGGGTGTCCGAATTTTTGTGTAACCGGCTCATGAGCGACACTGTCGCTCCGAACCGGAGACACCATGAGCAAGACGCAACATCCCATCACTGACGAGCT
GCTGGATCAGCTCTTGGCCAACTACCAGAATCCTGAAGACCTGATCGGTGCTGACGGCATCCTCAAGCAACTGACCAAGAAGCTGGTTGAGCGTGCGCTG
GATGCTGAACTGACCCACCACCTGGGCCACGACAAGCATCAGCCGGTCAGCAACTCGACTGGCAACACCCGCAACGGCTTCAGCCGCAAGAAGCTCAAGG
GTGAGTTCGGCGAACTACCCATCGAAGTGCCGCGCGACCGGCATGGCACTTTCGATCCGCAGATCGTCGAGAAGCACCAGACCCGCTGGACGGGCTTCGA
CGACAAGATCCTCTCACTCTATGCCCGCGGCATGACTGTGCGCGAGATCCAGGCGCACTTGCAGGAAATGTACGGTGCCGGGGTGTCGCCCAGCCTGATC
TCCTCGGTGACCGATGCCGTAGCCGATGAAGTGAAGGCCTGGCAGTCGCGCCCGCTCGATGCGGTCTACCCCATCGTCTACCTCGACTGCATCCACACCA
AGGTGCGCGAAGGCGCCGTGCGAGTGAAGGCGGTGTATCTGGCGTTGGGTATCAATCTGGCTGGCGAGAAGGAAATCCTCGGCCTATGGATCGCCCAGAA
CGAGGGCGCCAAGTTCTGGTTACAGGTGGTAACCGAGCTGCGTAACCGTGGCGTGCAGGACATCTTCGTCGCCTGCGTGGATGGCCTGAAGGGCTTCCCC
GAGGCTATCGAAGCAGTGTTCCCGCACACCAGCGTGCAGCTGTGCATCGTGCACATGGTCAGGCACAGCCTGAACTATGTGTCGTGGAAACGGCGGGCTG
AAGTGGCTACTGACCTGAAGCGAATTTACCAGTCCAGCACGGCAGACGAGGCCGAACTGCGCCTCGGTGAGTTCGAGGCCAAGTGGGACGATGACTACCT
GCCAATTGGTCAGTCCTGGCGGCGCAACTGGCCACGTATCACGCCGTTCTTCGACTTCCCGCCGGAGATCCGCAAGGTGATCTACACCACCAACGCCATC
GAATCGGTGAACATGAGCCTGCGCAAGATCACCAAGAATCGCGGATCGTTTCCCAGCGACGAGGCGCTGCTGAAACTGTTCTACCTGGCGCTACGCAACA
TCAGCAAAAAATGGACGATGCCGATCCGCGACTGGAAGGCGGCGCTGACGCGCTTTACGATTAGCTACGAAGACCGGCTGCCGCAGCAGTAACCCCTAAC
CCCGGTTACACAAAATTCTGCACACCCTC
GCTGGATCAGCTCTTGGCCAACTACCAGAATCCTGAAGACCTGATCGGTGCTGACGGCATCCTCAAGCAACTGACCAAGAAGCTGGTTGAGCGTGCGCTG
GATGCTGAACTGACCCACCACCTGGGCCACGACAAGCATCAGCCGGTCAGCAACTCGACTGGCAACACCCGCAACGGCTTCAGCCGCAAGAAGCTCAAGG
GTGAGTTCGGCGAACTACCCATCGAAGTGCCGCGCGACCGGCATGGCACTTTCGATCCGCAGATCGTCGAGAAGCACCAGACCCGCTGGACGGGCTTCGA
CGACAAGATCCTCTCACTCTATGCCCGCGGCATGACTGTGCGCGAGATCCAGGCGCACTTGCAGGAAATGTACGGTGCCGGGGTGTCGCCCAGCCTGATC
TCCTCGGTGACCGATGCCGTAGCCGATGAAGTGAAGGCCTGGCAGTCGCGCCCGCTCGATGCGGTCTACCCCATCGTCTACCTCGACTGCATCCACACCA
AGGTGCGCGAAGGCGCCGTGCGAGTGAAGGCGGTGTATCTGGCGTTGGGTATCAATCTGGCTGGCGAGAAGGAAATCCTCGGCCTATGGATCGCCCAGAA
CGAGGGCGCCAAGTTCTGGTTACAGGTGGTAACCGAGCTGCGTAACCGTGGCGTGCAGGACATCTTCGTCGCCTGCGTGGATGGCCTGAAGGGCTTCCCC
GAGGCTATCGAAGCAGTGTTCCCGCACACCAGCGTGCAGCTGTGCATCGTGCACATGGTCAGGCACAGCCTGAACTATGTGTCGTGGAAACGGCGGGCTG
AAGTGGCTACTGACCTGAAGCGAATTTACCAGTCCAGCACGGCAGACGAGGCCGAACTGCGCCTCGGTGAGTTCGAGGCCAAGTGGGACGATGACTACCT
GCCAATTGGTCAGTCCTGGCGGCGCAACTGGCCACGTATCACGCCGTTCTTCGACTTCCCGCCGGAGATCCGCAAGGTGATCTACACCACCAACGCCATC
GAATCGGTGAACATGAGCCTGCGCAAGATCACCAAGAATCGCGGATCGTTTCCCAGCGACGAGGCGCTGCTGAAACTGTTCTACCTGGCGCTACGCAACA
TCAGCAAAAAATGGACGATGCCGATCCGCGACTGGAAGGCGGCGCTGACGCGCTTTACGATTAGCTACGAAGACCGGCTGCCGCAGCAGTAACCCCTAAC
CCCGGTTACACAAAATTCTGCACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 66 | 1292 | + | No |
Chemistry : DDE
ORF sequence :
MSKTQHPITDELLDQLLANYQNPEDLIGADGILKQLTKKLVERALDAELTHHLGHDKHQPVSNSTGNTRNGFSRKKLKGEFGELPIEVPRDRHGTFDPQI
VEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAGVSPSLISSVTDAVADEVKAWQSRPLDAVYPIVYLDCIHTKVREGAVRVKAVYLALGINLAG
EKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDGLKGFPEAIEAVFPHTSVQLCIVHMVRHSLNYVSWKRRAEVATDLKRIYQSSTADEAELRL
GEFEAKWDDDYLPIGQSWRRNWPRITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ
VEKHQTRWTGFDDKILSLYARGMTVREIQAHLQEMYGAGVSPSLISSVTDAVADEVKAWQSRPLDAVYPIVYLDCIHTKVREGAVRVKAVYLALGINLAG
EKEILGLWIAQNEGAKFWLQVVTELRNRGVQDIFVACVDGLKGFPEAIEAVFPHTSVQLCIVHMVRHSLNYVSWKRRAEVATDLKRIYQSSTADEAELRL
GEFEAKWDDDYLPIGQSWRRNWPRITPFFDFPPEIRKVIYTTNAIESVNMSLRKITKNRGSFPSDEALLKLFYLALRNISKKWTMPIRDWKAALTRFTIS
YEDRLPQQ
Blast result :
Comments
ISPa46 is 97% aa similar to ISPa1328.
This strain was obtained from sputum of CF patient.
This strain was obtained from sputum of CF patient.
References
1] Seydina Diene (2012) Direct ISfinder submission.