ISBth18
- Family ISNCY
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010599 | ND | Bacillus thuringiensis | Bacillus thuringiensis sv. kurstaki plasmid pAW63 |
DNA section
IS Length : 996 bp
Ends
IR Length : 22/26
IRL : GAGGGTGTTGCAAAACTCATAAATATCCAAAAATAAATGCATAAAAAAAT
IRR : GAGGGTGTTGCAAAACTAAAATAAATATGCAATGTTATGAATCAAAAAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTAATGATG | TAATGGTTAA | 0 |
DNA sequence
GAGGGTGTTGCAAAACTCATAAATATCCAAAAATAAATGCATAAAAAAATCCGTTTTCCTGGAAGAATGATAGTAACCCAAACTATCCCTAGAAAGGACG
GATTTACTAGTATGATAACCAATTTTGACCAAAGTCAATCCACTTTACAGGTTTTATTTGCGTATGTAGACAGTTTAACCATAGAAGGCGTTCCGCCTAT
TACAGGCCGTCCACCCATTTGTAGAAAAGCTTTACTCAAATGTTTTTTCTTGAAAACCGTATTCCAAATTAATTCTTTACGCAAATTGACTCGTTTTTTG
CATCAATACCCTTCCTTTCGTGCATCTTGTGGTTTATCTTTTGTTCCTCATATTTCTACTTTTTCACGTGTAGGCACTTGGTTTCGTGAAGAAGGTGTTC
CAATCATTCATGAAAAGGTTCTTCAGGAACTTAATTTAGGACTGATTCCTTGCGTCTTAATTGATAGCACGGCCTTACGGAGTAGTTTGTATGATTCGCA
AGCGAAGTGGGGGAAATCGACTCGTTATGGTTGGTATAAAGGATATAAGGCTCATGTTTGTTCAACACCAGAAGGTGTTGTATTATCTTACGCGTTTACA
ACAGCGAACGTACACGATAGCAAGATGGCTCCTATACTACTTCAAGACATAGAAGACCAACATGTGTTATTTTCTATAGCAGACGCGGCTTATGATAGCC
AACACATTTATAAAATTGCAGGTACGTGTGATATCTTTCCGATAAATCCTATTAATTCACGAAATGGCGAACAAATTAAAAGTTCGCACCGCCGTGTGTT
ATCACTTTTTGTAACTACAACCTTTGGGAAACAGTTGATGAAAGAGCGAGGGAAAATTGAGCAGCAGTTTAGCAATCTCAAAGATAAAGGGCTGGAACAG
CCGCGCTGGTATGGACAAAATCGCTATCTACTGCATATCCAGCTAGTTTTTTTGATTCATAACATTGCATATTTATTTTAGTTTTGCAACACCCTC
GATTTACTAGTATGATAACCAATTTTGACCAAAGTCAATCCACTTTACAGGTTTTATTTGCGTATGTAGACAGTTTAACCATAGAAGGCGTTCCGCCTAT
TACAGGCCGTCCACCCATTTGTAGAAAAGCTTTACTCAAATGTTTTTTCTTGAAAACCGTATTCCAAATTAATTCTTTACGCAAATTGACTCGTTTTTTG
CATCAATACCCTTCCTTTCGTGCATCTTGTGGTTTATCTTTTGTTCCTCATATTTCTACTTTTTCACGTGTAGGCACTTGGTTTCGTGAAGAAGGTGTTC
CAATCATTCATGAAAAGGTTCTTCAGGAACTTAATTTAGGACTGATTCCTTGCGTCTTAATTGATAGCACGGCCTTACGGAGTAGTTTGTATGATTCGCA
AGCGAAGTGGGGGAAATCGACTCGTTATGGTTGGTATAAAGGATATAAGGCTCATGTTTGTTCAACACCAGAAGGTGTTGTATTATCTTACGCGTTTACA
ACAGCGAACGTACACGATAGCAAGATGGCTCCTATACTACTTCAAGACATAGAAGACCAACATGTGTTATTTTCTATAGCAGACGCGGCTTATGATAGCC
AACACATTTATAAAATTGCAGGTACGTGTGATATCTTTCCGATAAATCCTATTAATTCACGAAATGGCGAACAAATTAAAAGTTCGCACCGCCGTGTGTT
ATCACTTTTTGTAACTACAACCTTTGGGAAACAGTTGATGAAAGAGCGAGGGAAAATTGAGCAGCAGTTTAGCAATCTCAAAGATAAAGGGCTGGAACAG
CCGCGCTGGTATGGACAAAATCGCTATCTACTGCATATCCAGCTAGTTTTTTTGATTCATAACATTGCATATTTATTTTAGTTTTGCAACACCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
870 bp | 289 aa | 112 | 981 | + | No |
Chemistry : Unknow
ORF sequence :
MITNFDQSQSTLQVLFAYVDSLTIEGVPPITGRPPICRKALLKCFFLKTVFQINSLRKLTRFLHQYPSFRASCGLSFVPHISTFSRVGTWFREEGVPIIH
EKVLQELNLGLIPCVLIDSTALRSSLYDSQAKWGKSTRYGWYKGYKAHVCSTPEGVVLSYAFTTANVHDSKMAPILLQDIEDQHVLFSIADAAYDSQHIY
KIAGTCDIFPINPINSRNGEQIKSSHRRVLSLFVTTTFGKQLMKERGKIEQQFSNLKDKGLEQPRWYGQNRYLLHIQLVFLIHNIAYLF
EKVLQELNLGLIPCVLIDSTALRSSLYDSQAKWGKSTRYGWYKGYKAHVCSTPEGVVLSYAFTTANVHDSKMAPILLQDIEDQHVLFSIADAAYDSQHIY
KIAGTCDIFPINPINSRNGEQIKSSHRRVLSLFVTTTFGKQLMKERGKIEQQFSNLKDKGLEQPRWYGQNRYLLHIQLVFLIHNIAYLF
Blast result :
Comments
ISBth18 is 94% aa similar to ISBth165.
References
1] ISfinder annotation(2012)
2] Van der Auwera,G.A., Andrup,L. and Mahillon,J. (2005) BMC Genomics 6, 103.
2] Van der Auwera,G.A., Andrup,L. and Mahillon,J. (2005) BMC Genomics 6, 103.