ISBth18

  • Family ISNCY
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010599 ND Bacillus thuringiensis
Bacillus thuringiensis sv. kurstaki plasmid pAW63
DNA section
IS Length : 996 bp

Ends


IR Length : 22/26

IRL : GAGGGTGTTGCAAAACTCATAAATATCCAAAAATAAATGCATAAAAAAAT
IRR : GAGGGTGTTGCAAAACTAAAATAAATATGCAATGTTATGAATCAAAAAAA

Insertion site


Left flankDirect repeatRight flankDR Length
ATTAATGATGTAATGGTTAA0

DNA sequence

GAGGGTGTTGCAAAACTCATAAATATCCAAAAATAAATGCATAAAAAAATCCGTTTTCCTGGAAGAATGATAGTAACCCAAACTATCCCTAGAAAGGACG
GATTTACTAGTATGATAACCAATTTTGACCAAAGTCAATCCACTTTACAGGTTTTATTTGCGTATGTAGACAGTTTAACCATAGAAGGCGTTCCGCCTAT
TACAGGCCGTCCACCCATTTGTAGAAAAGCTTTACTCAAATGTTTTTTCTTGAAAACCGTATTCCAAATTAATTCTTTACGCAAATTGACTCGTTTTTTG
CATCAATACCCTTCCTTTCGTGCATCTTGTGGTTTATCTTTTGTTCCTCATATTTCTACTTTTTCACGTGTAGGCACTTGGTTTCGTGAAGAAGGTGTTC
CAATCATTCATGAAAAGGTTCTTCAGGAACTTAATTTAGGACTGATTCCTTGCGTCTTAATTGATAGCACGGCCTTACGGAGTAGTTTGTATGATTCGCA
AGCGAAGTGGGGGAAATCGACTCGTTATGGTTGGTATAAAGGATATAAGGCTCATGTTTGTTCAACACCAGAAGGTGTTGTATTATCTTACGCGTTTACA
ACAGCGAACGTACACGATAGCAAGATGGCTCCTATACTACTTCAAGACATAGAAGACCAACATGTGTTATTTTCTATAGCAGACGCGGCTTATGATAGCC
AACACATTTATAAAATTGCAGGTACGTGTGATATCTTTCCGATAAATCCTATTAATTCACGAAATGGCGAACAAATTAAAAGTTCGCACCGCCGTGTGTT
ATCACTTTTTGTAACTACAACCTTTGGGAAACAGTTGATGAAAGAGCGAGGGAAAATTGAGCAGCAGTTTAGCAATCTCAAAGATAAAGGGCTGGAACAG
CCGCGCTGGTATGGACAAAATCGCTATCTACTGCATATCCAGCTAGTTTTTTTGATTCATAACATTGCATATTTATTTTAGTTTTGCAACACCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
870 bp289 aa112981+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MITNFDQSQSTLQVLFAYVDSLTIEGVPPITGRPPICRKALLKCFFLKTVFQINSLRKLTRFLHQYPSFRASCGLSFVPHISTFSRVGTWFREEGVPIIH
EKVLQELNLGLIPCVLIDSTALRSSLYDSQAKWGKSTRYGWYKGYKAHVCSTPEGVVLSYAFTTANVHDSKMAPILLQDIEDQHVLFSIADAAYDSQHIY
KIAGTCDIFPINPINSRNGEQIKSSHRRVLSLFVTTTFGKQLMKERGKIEQQFSNLKDKGLEQPRWYGQNRYLLHIQLVFLIHNIAYLF

 

Blast result :
Comments
ISBth18 is 94% aa similar to ISBth165.
References
1] ISfinder annotation(2012)
2] Van der Auwera,G.A., Andrup,L. and Mahillon,J. (2005) BMC Genomics 6, 103.