ISHla6
- Family IS5
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_012028 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 chromosome 2 Halorubrum lacusprofundi ATCC 49239 chromosome 1 Halorubrum lacusprofundi plasmid pHLAC01 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 15
IRL : GAGGGTGTCATAGAAAGCGTCACACACGAAGACGCAGGATGTTGGAACTG
IRR : GAGGGTGTCATAGAATAGTTCTCATAGCGTGATGACGGTGCTTCCTGGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGAGATATAGATAGAGTATCAGA | GTAGTGCATTGGCTATTCGTCGGGA | 0 | |
| CGAAATCTGTAGGTGTAGTGCATT | ATCGAAAGCGAAAGCACCACTGCAA | 0 | |
| CCCACTGGTTTGCCGTCGTGCTGG | TTGGTTATGAAAAATCTTGTTCAGT | 0 | |
| GTCCTCGTCGGGGATGAGATAGGT | ACAGAGTTC | GGGAACGCCTGGTGCG | 9 |
| ACCCGGAATTGCCGTTTATTCTC | TTTACA | GGGAAAGGCTCAGAAGAAAT | 6 |
| CCGAGCTGCGCTTCTTGTTTGGT | ATGGACG | GTCAATATTGTCTGCTTT | 7 |
| CATATCGTCCCAGCTCTCGTC | AGACGTTCTAACTAAGCGGCTT | 0 | |
| CTATTTTGGATTGGTATACTA | GAGTAAAACAATCAAACCCATCGAAT | 0 | |
| AAGGGTAGAGGCGATTTAATT | GAGTAA | TTCAGCAGATCAGTCCACAGA | 6 |
DNA sequence
GAGGGTGTCATAGAAAGCGTCACACACGAAGACGCAGGATGTTGGAACTGTGTCTACGAGCGCCAGCATCCTGCAAGAGGAGACTTCTATCGACGAGTTC
TTCAATGTAATGGCGACCGAGACGCTCGCGTTGTTCGAGCATCTTGAGTTCGACTTTCTCGAAGAATTCGATGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGATCATCACCCACCAGCACTCTTCCGAGCGTTCCTGCACTGCTACTACAAGAACGTCTACGGCATCCGTCCAGTCACGCGAGAACTCCAGAACAC
GGTCGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGCTTCCTCACCGACCTCGAACACGTCGTCGACGAGGTCTTCGAC
CGCCTCGTCGAGCAGGCCGCCTGCCGCGGCCTGCTCGACTTGACCTACTCCATCGATTCCACCGACGTGAGGACGATGCCCGCCGACCAAGACGCGTCGA
AAGGCTACGATCCAACCGCCGAAGAGTACTACCACGGCTACGGCTGTACGATCGTCTCGACCGGGCAAAAGATCCCGATTGCCGCGGAGTTCACCGAGAG
CAAGCAAGCGCCAGAGGAGACGGCGATGCGCGTCACGTGTGACGCGCTCGCCGTCGAGAAACCGATCTGGATGCTTGGAGACAGCGCCTACGACACGCTC
GGCTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCTCCGTACAACGCACGAAACACCGACGATCCGAAAGACATCGAGTACAGGGTCGAAG
CCCGCATCGACGAACACAGCGAGGACGTTCAGCTGAAGCAATCGACGCTAGACGAGACGTACAACCGCCGGAGTGGAGTCGAACGAACCAACGACGCCGT
CAAGGACTGCGGCCTCGGGCACGTTCGCGCCCGAGGCCGCGTCCACGCACGAGCACAAGTGTTCCTCGCGCTGTGCCTTCGTCTCGTTATTGCGATCACC
AACGACGAACGCGGAGACAATCCAGGAAGCACCGTCATCACGCTATGAGAACTATTCTATGACACCCTC
TTCAATGTAATGGCGACCGAGACGCTCGCGTTGTTCGAGCATCTTGAGTTCGACTTTCTCGAAGAATTCGATGTGTTCGCCCCCGCTCGCCGGGGGCGAA
CACGAGATCATCACCCACCAGCACTCTTCCGAGCGTTCCTGCACTGCTACTACAAGAACGTCTACGGCATCCGTCCAGTCACGCGAGAACTCCAGAACAC
GGTCGTCTGGCTCAGCTGTGGCTTCGATCGACCGCCGTCGAGAGACGCGGTCGATCGCTTCCTCACCGACCTCGAACACGTCGTCGACGAGGTCTTCGAC
CGCCTCGTCGAGCAGGCCGCCTGCCGCGGCCTGCTCGACTTGACCTACTCCATCGATTCCACCGACGTGAGGACGATGCCCGCCGACCAAGACGCGTCGA
AAGGCTACGATCCAACCGCCGAAGAGTACTACCACGGCTACGGCTGTACGATCGTCTCGACCGGGCAAAAGATCCCGATTGCCGCGGAGTTCACCGAGAG
CAAGCAAGCGCCAGAGGAGACGGCGATGCGCGTCACGTGTGACGCGCTCGCCGTCGAGAAACCGATCTGGATGCTTGGAGACAGCGCCTACGACACGCTC
GGCTGGCACGACCACCTGCTGGCCGCAGGGGTCGTGCCAGTCGCTCCGTACAACGCACGAAACACCGACGATCCGAAAGACATCGAGTACAGGGTCGAAG
CCCGCATCGACGAACACAGCGAGGACGTTCAGCTGAAGCAATCGACGCTAGACGAGACGTACAACCGCCGGAGTGGAGTCGAACGAACCAACGACGCCGT
CAAGGACTGCGGCCTCGGGCACGTTCGCGCCCGAGGCCGCGTCCACGCACGAGCACAAGTGTTCCTCGCGCTGTGCCTTCGTCTCGTTATTGCGATCACC
AACGACGAACGCGGAGACAATCCAGGAAGCACCGTCATCACGCTATGAGAACTATTCTATGACACCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 999 bp | 332 aa | 50 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MSTSASILQEETSIDEFFNVMATETLALFEHLEFDFLEEFDVFAPARRGRTRDHHPPALFRAFLHCYYKNVYGIRPVTRELQNTVVWLSCGFDRPPSRDA
VDRFLTDLEHVVDEVFDRLVEQAACRGLLDLTYSIDSTDVRTMPADQDASKGYDPTAEEYYHGYGCTIVSTGQKIPIAAEFTESKQAPEETAMRVTCDAL
AVEKPIWMLGDSAYDTLGWHDHLLAAGVVPVAPYNARNTDDPKDIEYRVEARIDEHSEDVQLKQSTLDETYNRRSGVERTNDAVKDCGLGHVRARGRVHA
RAQVFLALCLRLVIAITNDERGDNPGSTVIT
VDRFLTDLEHVVDEVFDRLVEQAACRGLLDLTYSIDSTDVRTMPADQDASKGYDPTAEEYYHGYGCTIVSTGQKIPIAAEFTESKQAPEETAMRVTCDAL
AVEKPIWMLGDSAYDTLGWHDHLLAAGVVPVAPYNARNTDDPKDIEYRVEARIDEHSEDVQLKQSTLDETYNRRSGVERTNDAVKDCGLGHVRARGRVHA
RAQVFLALCLRLVIAITNDERGDNPGSTVIT
Blast result :
Comments
ISHla6 is 91% aa similar to ISH11.
References
1] ISfinder annotation (2012)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.