ISHaha5
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE717023 | ND | Halobacillus halophilus | Halobacillus halophilus DSM 2266 |
DNA section
IS Length : 1627 bp
Ends
Left end : TTCGTATTATAAGGTTAACCAGAATTCTAGATATTTCTGGTTGACCATTTTTAATATGGTCTTATTATTACAGTAGCCAGGGTAGAACGCCCCTGCCCGT
Right end : TCAAACATTTGAGGAAGGTTATTTGCCATGCGCATTTTTAGTATAACATGGGTTACCTTAAGTTTTTATTGAAAAATGTTGACAAACTATTAGCTGGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCCGGCCCT | AGCTGAAGAT | 0 | |
ATCCGGCCCG | GGTTGAATAA | 0 | |
TAACCTGCCC | ACTTGAAGAC | 0 |
DNA sequence
TTCGTATTATAAGGTTAACCAGAATTCTAGATATTTCTGGTTGACCATTTTTAATATGGTCTTATTATTACAGTAGCCAGGGTAGAACGCCCCTGCCCGT
GGGACTTAGATCCCGTCAGCTAAACCGTTCACCCCCTACTGGTAGAAACATGTTTGAGGCTGGTTGGGACAAGATCCCGTATAACAAGCGAAGCTATGAT
ACTACTAGGAGGACTAGGGGTTACTGGCAAGATGAATCTGAGGAGGAGATATAGAATGAATCCAGTCGTGGGTCTGGATGTTTCAAAAGGAGAAAGTGAG
GTTCAGGCCTTTTTAGATAAAGGAAAACCTTACGGTAAAAGTTTTAGCATCAAGCATGACCTGGATGGACTAGGCTCACTACTTGAGTTTATGGAAGGTG
TAAAAGATGCAACAGGCATTCAACCTTCGGTTGTACTAGAAGCTACTGGACACTATCACGCACCAGTGGTGCAGTTTCTGGAGCAACATAACTATTTATT
GATTATTGTTAACCCTTTGATCTCTCATAGAGCTAAAAGCTCAAGTTTACGAAAAGTTAAAACGGATGCCATTGATGCTTATCGTCTTTGTGAGCTTTAC
TACAAAGAAGATTTAGAACCTTATAAAAGACGCGGTACTCAGCTTTTAAACTTGCGTAATCTTACAAGGCAACACGAGAATATTACGGGAATTTATGTGC
AAACCAAATTACAATTTCAAGCAGTACTGGATCAAATATTCCCTGAATATAAAGGGGTTTTTGGTGACTTATACTCAGTGGTGTCTTTACTTGTGTTAAA
GGAATTCCCTTCATCAGAAGACATTTTAGCTGTTAGCCAAGATGCGTTAGCTGATAAAATCAAGGAATTCTGTAAGAGTCGGTCTAAGAGATGGGCAGCG
GAAAAAGCTCAGGAACTTAAGAAAGCAGCTGCACGGAACCCATTCAAAAAGACACTTTATCAGAGTCATTTACTGAGTCTTGGTATGTATATCAATATGC
TTCTTCAATACAAAGAGCATCTATCCAGATTGGACTCAGAGATAGATGCTCTCGCAAAAGAAGTTGAAGAATATAAGATCATCCAATCTATCCCTGGTAT
TGGAGAAAAAATCGCTGCCACGATTATTTCTGAGATTGGGGAGATAGACCGGTTTAATCACCCTAAAAAGCTAGTAGCATTCGCAGGAGTTGATCCAGAA
GTACATGAATCAGGTAAGTTTAAGGCGACTTTAGTTCGGATTACAAAACGTGGTTCAAGCCGACTACGTCATGCCCTATATATGGCCGTTAGATCTGGTA
TTCGTGATTGTCGCAAACAAAAAACAACAGCCGAAATTATCCCTAGAAACAGAAAATTAAGAGCGTTTTACGACAAGAAGCGAAAGGAAGGCAAATTATA
TAAAGTAGCCGTCATTGCTTGTGTAAATAAGCTCTTACATTGGATTTATGCTTTATTAAAAAACAAAACCACTTTCCAAGATATAGCGTAATCACTATTT
CCATCTAAATAATACAAAACCTTCCAATCAAACATTTGAGGAAGGTTATTTGCCATGCGCATTTTTAGTATAACATGGGTTACCTTAAGTTTTTATTGAA
AAATGTTGACAAACTATTAGCTGGTTT
GGGACTTAGATCCCGTCAGCTAAACCGTTCACCCCCTACTGGTAGAAACATGTTTGAGGCTGGTTGGGACAAGATCCCGTATAACAAGCGAAGCTATGAT
ACTACTAGGAGGACTAGGGGTTACTGGCAAGATGAATCTGAGGAGGAGATATAGAATGAATCCAGTCGTGGGTCTGGATGTTTCAAAAGGAGAAAGTGAG
GTTCAGGCCTTTTTAGATAAAGGAAAACCTTACGGTAAAAGTTTTAGCATCAAGCATGACCTGGATGGACTAGGCTCACTACTTGAGTTTATGGAAGGTG
TAAAAGATGCAACAGGCATTCAACCTTCGGTTGTACTAGAAGCTACTGGACACTATCACGCACCAGTGGTGCAGTTTCTGGAGCAACATAACTATTTATT
GATTATTGTTAACCCTTTGATCTCTCATAGAGCTAAAAGCTCAAGTTTACGAAAAGTTAAAACGGATGCCATTGATGCTTATCGTCTTTGTGAGCTTTAC
TACAAAGAAGATTTAGAACCTTATAAAAGACGCGGTACTCAGCTTTTAAACTTGCGTAATCTTACAAGGCAACACGAGAATATTACGGGAATTTATGTGC
AAACCAAATTACAATTTCAAGCAGTACTGGATCAAATATTCCCTGAATATAAAGGGGTTTTTGGTGACTTATACTCAGTGGTGTCTTTACTTGTGTTAAA
GGAATTCCCTTCATCAGAAGACATTTTAGCTGTTAGCCAAGATGCGTTAGCTGATAAAATCAAGGAATTCTGTAAGAGTCGGTCTAAGAGATGGGCAGCG
GAAAAAGCTCAGGAACTTAAGAAAGCAGCTGCACGGAACCCATTCAAAAAGACACTTTATCAGAGTCATTTACTGAGTCTTGGTATGTATATCAATATGC
TTCTTCAATACAAAGAGCATCTATCCAGATTGGACTCAGAGATAGATGCTCTCGCAAAAGAAGTTGAAGAATATAAGATCATCCAATCTATCCCTGGTAT
TGGAGAAAAAATCGCTGCCACGATTATTTCTGAGATTGGGGAGATAGACCGGTTTAATCACCCTAAAAAGCTAGTAGCATTCGCAGGAGTTGATCCAGAA
GTACATGAATCAGGTAAGTTTAAGGCGACTTTAGTTCGGATTACAAAACGTGGTTCAAGCCGACTACGTCATGCCCTATATATGGCCGTTAGATCTGGTA
TTCGTGATTGTCGCAAACAAAAAACAACAGCCGAAATTATCCCTAGAAACAGAAAATTAAGAGCGTTTTACGACAAGAAGCGAAAGGAAGGCAAATTATA
TAAAGTAGCCGTCATTGCTTGTGTAAATAAGCTCTTACATTGGATTTATGCTTTATTAAAAAACAAAACCACTTTCCAAGATATAGCGTAATCACTATTT
CCATCTAAATAATACAAAACCTTCCAATCAAACATTTGAGGAAGGTTATTTGCCATGCGCATTTTTAGTATAACATGGGTTACCTTAAGTTTTTATTGAA
AAATGTTGACAAACTATTAGCTGGTTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 256 | 1491 | + | No |
Chemistry : DEDD
ORF sequence :
MNPVVGLDVSKGESEVQAFLDKGKPYGKSFSIKHDLDGLGSLLEFMEGVKDATGIQPSVVLEATGHYHAPVVQFLEQHNYLLIIVNPLISHRAKSSSLRK
VKTDAIDAYRLCELYYKEDLEPYKRRGTQLLNLRNLTRQHENITGIYVQTKLQFQAVLDQIFPEYKGVFGDLYSVVSLLVLKEFPSSEDILAVSQDALAD
KIKEFCKSRSKRWAAEKAQELKKAAARNPFKKTLYQSHLLSLGMYINMLLQYKEHLSRLDSEIDALAKEVEEYKIIQSIPGIGEKIAATIISEIGEIDRF
NHPKKLVAFAGVDPEVHESGKFKATLVRITKRGSSRLRHALYMAVRSGIRDCRKQKTTAEIIPRNRKLRAFYDKKRKEGKLYKVAVIACVNKLLHWIYAL
LKNKTTFQDIA
VKTDAIDAYRLCELYYKEDLEPYKRRGTQLLNLRNLTRQHENITGIYVQTKLQFQAVLDQIFPEYKGVFGDLYSVVSLLVLKEFPSSEDILAVSQDALAD
KIKEFCKSRSKRWAAEKAQELKKAAARNPFKKTLYQSHLLSLGMYINMLLQYKEHLSRLDSEIDALAKEVEEYKIIQSIPGIGEKIAATIISEIGEIDRF
NHPKKLVAFAGVDPEVHESGKFKATLVRITKRGSSRLRHALYMAVRSGIRDCRKQKTTAEIIPRNRKLRAFYDKKRKEGKLYKVAVIACVNKLLHWIYAL
LKNKTTFQDIA
Blast result :
Comments
ISHaha5 is 52% aa similar to ISBth13.
References