ISHaha2
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE717023 | ND | Halobacillus halophilus | Halobacillus halophilus DSM 2266 |
DNA section
IS Length : 1376 bp
Ends
IR Length : 19/25
IRL : GGCTCTAGAATATTTGTTGGGGTAGATAAAAAATTTGGTATAAAAAAACA
IRR : GGTTCTAAGTCAATTGTTGGGGTAGGAGGCAAGCTCCTGCCCCTTAACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCCTCTCT | ATTTTTTT | GTGAGGAAT | 8 |
CTTTTTTTC | ATTTTTTT | ATTAATCCA | 8 |
ATATCTAAA | ATTTTTGT | TTCCTTCAT | 8 |
DNA sequence
GGCTCTAGAATATTTGTTGGGGTAGATAAAAAATTTGGTATAAAAAAACACGCAAGCTCCAATCTTTACTACACTTGAATTGTCGAGAAACAAGCAGTAA
AGGAGTTGCGTGTACGTGTATTCTAACATGCCCATACCAGGACTACAAAAGGCGATAATAAAGAAAAGTGAAGAAGTAGAAGGGGGATTTCATCTTCATG
TGGAATTGCCGAGAAAGAATCACAGGTGTAAGGATTGCGGAGAATGGACCGATCGCATCCACGACTACAGAATACAGAAAATCCAACACCTTAAAATCTT
TGAACGTACCACCTCCCTCTTCTACCGAAAACGTCGTTACCGTTGTAGGTGCGGGAAACGATTTTTTGAAGATAACGACCTGGTTGAGCGGTATCAGCGT
CACTCGAAGGAGTGGAACCAGGCCTTAGGCCTTCGAGTCATTCAGGGAAAGAACTTCAAAGATACAGCTGACTTATTTCGTACTTCTCCAACCACAGTTA
TGCGCCGCTTTGATGAGTTGGCCATGCCTATGTTGGAGAAGGTGGAAACCCTTCCGCCTGTGATTGCGATTGATGAATACAAAGGAGATACGAGTGCAGG
AAAGTACCAAGTCGTCATTGCCGACGGAGACACCGGTCAACTCTTGGATATTCTTCCGGATCGTTCCGTGGATACCGTGCGAGATTATCTTCGCGAGAAG
GGATCGGAGGTCGAGATGGTGATTATGGATATGAGTCACGCCTTCAAATCGGCCGTCCAAAAAGCCTTGGGCAGCCCTATCATTGTGGCTGATCGTTTTC
ACTTCTGTCGCTACATCTACTGGGCTCTCGAACGAGTGAGAAGGCGTGTTCAGAAAGAATTTCATCATTACGATAGGAAGCAGTGTAAGCGAAAAAAGCA
TGTCTTTTATAAGCGTGAAGAGAACTTAACGGAAAGGCAACGCTGGCATCTAGAACGCTACCTAAGCATGTCGGAAGACATGCGTACCTCCTATGAATTG
AAGGAATCTTTTAGAGAATGGTTTGAGAGAGCGAAGAACATTGGAGTTGAACAACCGTCTCAGGTTAAGAAAGAGTTACATAACTTCTATAAGCAGGTAG
AAAAAGCAGGTGTATGGGAGTTTATGCAGGGGATTAATACTTTGAAGAATTGGCAGAAAGAAATCTTGAATAGCTTTACTTTCAATTATAGCAATGGATT
CGTGGAGGGACTAAACAATCAGACGAAGGTTATTAAACGAAATGCCTTTGGTTTCAGGAGATATGATCGTCTTCGATTGAAGGTCCTCCTTCATCATCAA
TACAAACATATAAGAAATTTTCAAGTTGGTTAAGGGGCAGGAGCTTGCCTCCTACCCCAACAATTGACTTAGAACC
AGGAGTTGCGTGTACGTGTATTCTAACATGCCCATACCAGGACTACAAAAGGCGATAATAAAGAAAAGTGAAGAAGTAGAAGGGGGATTTCATCTTCATG
TGGAATTGCCGAGAAAGAATCACAGGTGTAAGGATTGCGGAGAATGGACCGATCGCATCCACGACTACAGAATACAGAAAATCCAACACCTTAAAATCTT
TGAACGTACCACCTCCCTCTTCTACCGAAAACGTCGTTACCGTTGTAGGTGCGGGAAACGATTTTTTGAAGATAACGACCTGGTTGAGCGGTATCAGCGT
CACTCGAAGGAGTGGAACCAGGCCTTAGGCCTTCGAGTCATTCAGGGAAAGAACTTCAAAGATACAGCTGACTTATTTCGTACTTCTCCAACCACAGTTA
TGCGCCGCTTTGATGAGTTGGCCATGCCTATGTTGGAGAAGGTGGAAACCCTTCCGCCTGTGATTGCGATTGATGAATACAAAGGAGATACGAGTGCAGG
AAAGTACCAAGTCGTCATTGCCGACGGAGACACCGGTCAACTCTTGGATATTCTTCCGGATCGTTCCGTGGATACCGTGCGAGATTATCTTCGCGAGAAG
GGATCGGAGGTCGAGATGGTGATTATGGATATGAGTCACGCCTTCAAATCGGCCGTCCAAAAAGCCTTGGGCAGCCCTATCATTGTGGCTGATCGTTTTC
ACTTCTGTCGCTACATCTACTGGGCTCTCGAACGAGTGAGAAGGCGTGTTCAGAAAGAATTTCATCATTACGATAGGAAGCAGTGTAAGCGAAAAAAGCA
TGTCTTTTATAAGCGTGAAGAGAACTTAACGGAAAGGCAACGCTGGCATCTAGAACGCTACCTAAGCATGTCGGAAGACATGCGTACCTCCTATGAATTG
AAGGAATCTTTTAGAGAATGGTTTGAGAGAGCGAAGAACATTGGAGTTGAACAACCGTCTCAGGTTAAGAAAGAGTTACATAACTTCTATAAGCAGGTAG
AAAAAGCAGGTGTATGGGAGTTTATGCAGGGGATTAATACTTTGAAGAATTGGCAGAAAGAAATCTTGAATAGCTTTACTTTCAATTATAGCAATGGATT
CGTGGAGGGACTAAACAATCAGACGAAGGTTATTAAACGAAATGCCTTTGGTTTCAGGAGATATGATCGTCTTCGATTGAAGGTCCTCCTTCATCATCAA
TACAAACATATAAGAAATTTTCAAGTTGGTTAAGGGGCAGGAGCTTGCCTCCTACCCCAACAATTGACTTAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1224 bp | 407 aa | 110 | 1333 | + | No |
Chemistry : Unknow
ORF sequence :
MYVYSNMPIPGLQKAIIKKSEEVEGGFHLHVELPRKNHRCKDCGEWTDRIHDYRIQKIQHLKIFERTTSLFYRKRRYRCRCGKRFFEDNDLVERYQRHSK
EWNQALGLRVIQGKNFKDTADLFRTSPTTVMRRFDELAMPMLEKVETLPPVIAIDEYKGDTSAGKYQVVIADGDTGQLLDILPDRSVDTVRDYLREKGSE
VEMVIMDMSHAFKSAVQKALGSPIIVADRFHFCRYIYWALERVRRRVQKEFHHYDRKQCKRKKHVFYKREENLTERQRWHLERYLSMSEDMRTSYELKES
FREWFERAKNIGVEQPSQVKKELHNFYKQVEKAGVWEFMQGINTLKNWQKEILNSFTFNYSNGFVEGLNNQTKVIKRNAFGFRRYDRLRLKVLLHHQYKH
IRNFQVG
EWNQALGLRVIQGKNFKDTADLFRTSPTTVMRRFDELAMPMLEKVETLPPVIAIDEYKGDTSAGKYQVVIADGDTGQLLDILPDRSVDTVRDYLREKGSE
VEMVIMDMSHAFKSAVQKALGSPIIVADRFHFCRYIYWALERVRRRVQKEFHHYDRKQCKRKKHVFYKREENLTERQRWHLERYLSMSEDMRTSYELKES
FREWFERAKNIGVEQPSQVKKELHNFYKQVEKAGVWEFMQGINTLKNWQKEILNSFTFNYSNGFVEGLNNQTKVIKRNAFGFRRYDRLRLKVLLHHQYKH
IRNFQVG
Blast result :
Comments
ISHaha2 is 78% aa similar to IS651.
References