ISHaha1
- Family IS4
- Group IS231
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
HE717023 | ND | Halobacillus halophilus | Halobacillus halophilus DSM 2266 |
DNA section
IS Length : 1554 bp
Ends
IR Length : 15/16
IRL : CATACCCGTCAAGCTAAGCTCTATAATTTCGTAACTCCCTTATAAACGTT
IRR : CATATCCGTCAAGCTAGTAAGTGAATAATTCTAGATAAGCAGTGGTCCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGGGAGTCT | CGTCATTTCCC | ACCACCCCA | 11 |
TGGGTTGGTG | GGGAAATGGCG | AGACTCCCCG | 11 |
GGGGTTGGTG | GGGAAATGACG | AGACTCCCAT | 11 |
ATGGGAGTCT | CGCCATTTCCC | CACCAACCCA | 11 |
DNA sequence
CATACCCGTCAAGCTAAGCTCTATAATTTCGTAACTCCCTTATAAACGTTACTCTTTTAGATGAAATTTCTAAAGGAGGATAATTTTATGGATCTTAGTA
AACACCTTCGGTCTATGGCTCAAGCTATTACAGAAACTTTAGGAGATCATTCTCTACGACAAACAGCTAAAGAAACGGGATTTTTGAAACGGACCAGTAA
ACTTAAACCAGAAGCATTCTTAAGTTTATGCACCCTCTTAAAAGATTCCGTGGGCAAAAACACCTTACCTAACTTATGTAGCCAAATCTCCTACGAATTC
CATACTTTTATCTCTAAACAAGCTTTGCATGAACGTTTTAACGATAAAGCGGTTTCCTTTCTAAAACAAGTATATAAGCAATTAGCCGATAAGCAGGAAA
TAACTTCGTCGGTTTTGGAACATCATTCATTATTCTCGCGCCTTAGAATTATGGATGCGACATCTTTTCGTCTGCCCAGCTCTTACTCCGATTATCCAGG
AGTACAGGGGCATGGAGTTAAAGTACAACTAGAATATGAATGGCTCAGGGGCAAGTTACTCTACCATAAGATTCAAGCAGAAGCTAAAAGTGATAAAGAT
GCCGCACGTGATCAGATGGAGTCATTGGAACCAGGGGATCTACTGTTACGGGATTTAGGTTATTATTCGGCAAGATTAATAAAGGAGATGGAGAGTAAAG
GGGCATTTTTCATTAGCAGAGTGCCGAGCCAAACCAAGTTTTGGACCGGGAGTTCGAAAGAAGGTTGGATACAAATTAAGCCTGAGGAAGATCTGAAACA
TAAGGTTTCGGGAGAAACCATTGATTATGGATTCATAAAAGTGGGAGGAGATTCACGAAGTTCCTATGTGGCTCGCATTGTAGCTCAGAAGCTTACGCTT
CAACAACAAAAGCAACGGGAAAGAGCGTTACATTTAAAAAGGCAGAAAGGTCACCAGACCCTTTCTGCCAATCAAAGAACTCAAATTCAAATCCTTGTGA
CCAATGTAACACAGGAAGATTTGGCCGCTCAAGACCTTTACCCTTTGTATTCCATAAGGTGGCAGGTAGAGATCTTATTTAAAGCTTGGAAATCCCTATT
TGAAATGGATGATGTCCGAAAAATAAATCAAGATCGATTGGAATGTCATTTATATGGAACGTTAATTGAGATTCTTCTCTCTTCCATGGTGACTTTCCAG
TGTCGTCACTATTTATATTGGAAACACCGAATAGAAGCAAGTGAATATAAGTGCATGGATATCGTGAAACAGGCTTTGCCATATCTAGTGTCTCCAATAA
AATCTGATTCGAAGAGTGTCGTAAAGATATTAGAAGCTATCTTCGAAAACGCTAGGCGACACGGCAGGAAAGACCACAAAGAAAAACATGAAAGTCCGTT
CGATGTTTTAGGATTAACTTATAAATAAAAGATTCCCTTCTTTTTATTACTGACTCCTTTAGGAGTCAATATAACCTTGATTGGAAATATGTGTAATTGA
AGGATTGGACCACTGCTTATCTAGAATTATTCACTTACTAGCTTGACGGATATG
AACACCTTCGGTCTATGGCTCAAGCTATTACAGAAACTTTAGGAGATCATTCTCTACGACAAACAGCTAAAGAAACGGGATTTTTGAAACGGACCAGTAA
ACTTAAACCAGAAGCATTCTTAAGTTTATGCACCCTCTTAAAAGATTCCGTGGGCAAAAACACCTTACCTAACTTATGTAGCCAAATCTCCTACGAATTC
CATACTTTTATCTCTAAACAAGCTTTGCATGAACGTTTTAACGATAAAGCGGTTTCCTTTCTAAAACAAGTATATAAGCAATTAGCCGATAAGCAGGAAA
TAACTTCGTCGGTTTTGGAACATCATTCATTATTCTCGCGCCTTAGAATTATGGATGCGACATCTTTTCGTCTGCCCAGCTCTTACTCCGATTATCCAGG
AGTACAGGGGCATGGAGTTAAAGTACAACTAGAATATGAATGGCTCAGGGGCAAGTTACTCTACCATAAGATTCAAGCAGAAGCTAAAAGTGATAAAGAT
GCCGCACGTGATCAGATGGAGTCATTGGAACCAGGGGATCTACTGTTACGGGATTTAGGTTATTATTCGGCAAGATTAATAAAGGAGATGGAGAGTAAAG
GGGCATTTTTCATTAGCAGAGTGCCGAGCCAAACCAAGTTTTGGACCGGGAGTTCGAAAGAAGGTTGGATACAAATTAAGCCTGAGGAAGATCTGAAACA
TAAGGTTTCGGGAGAAACCATTGATTATGGATTCATAAAAGTGGGAGGAGATTCACGAAGTTCCTATGTGGCTCGCATTGTAGCTCAGAAGCTTACGCTT
CAACAACAAAAGCAACGGGAAAGAGCGTTACATTTAAAAAGGCAGAAAGGTCACCAGACCCTTTCTGCCAATCAAAGAACTCAAATTCAAATCCTTGTGA
CCAATGTAACACAGGAAGATTTGGCCGCTCAAGACCTTTACCCTTTGTATTCCATAAGGTGGCAGGTAGAGATCTTATTTAAAGCTTGGAAATCCCTATT
TGAAATGGATGATGTCCGAAAAATAAATCAAGATCGATTGGAATGTCATTTATATGGAACGTTAATTGAGATTCTTCTCTCTTCCATGGTGACTTTCCAG
TGTCGTCACTATTTATATTGGAAACACCGAATAGAAGCAAGTGAATATAAGTGCATGGATATCGTGAAACAGGCTTTGCCATATCTAGTGTCTCCAATAA
AATCTGATTCGAAGAGTGTCGTAAAGATATTAGAAGCTATCTTCGAAAACGCTAGGCGACACGGCAGGAAAGACCACAAAGAAAAACATGAAAGTCCGTT
CGATGTTTTAGGATTAACTTATAAATAAAAGATTCCCTTCTTTTTATTACTGACTCCTTTAGGAGTCAATATAACCTTGATTGGAAATATGTGTAATTGA
AGGATTGGACCACTGCTTATCTAGAATTATTCACTTACTAGCTTGACGGATATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1341 bp | 446 aa | 88 | 1428 | + | No |
Chemistry : DDE
ORF sequence :
MDLSKHLRSMAQAITETLGDHSLRQTAKETGFLKRTSKLKPEAFLSLCTLLKDSVGKNTLPNLCSQISYEFHTFISKQALHERFNDKAVSFLKQVYKQLA
DKQEITSSVLEHHSLFSRLRIMDATSFRLPSSYSDYPGVQGHGVKVQLEYEWLRGKLLYHKIQAEAKSDKDAARDQMESLEPGDLLLRDLGYYSARLIKE
MESKGAFFISRVPSQTKFWTGSSKEGWIQIKPEEDLKHKVSGETIDYGFIKVGGDSRSSYVARIVAQKLTLQQQKQRERALHLKRQKGHQTLSANQRTQI
QILVTNVTQEDLAAQDLYPLYSIRWQVEILFKAWKSLFEMDDVRKINQDRLECHLYGTLIEILLSSMVTFQCRHYLYWKHRIEASEYKCMDIVKQALPYL
VSPIKSDSKSVVKILEAIFENARRHGRKDHKEKHESPFDVLGLTYK
DKQEITSSVLEHHSLFSRLRIMDATSFRLPSSYSDYPGVQGHGVKVQLEYEWLRGKLLYHKIQAEAKSDKDAARDQMESLEPGDLLLRDLGYYSARLIKE
MESKGAFFISRVPSQTKFWTGSSKEGWIQIKPEEDLKHKVSGETIDYGFIKVGGDSRSSYVARIVAQKLTLQQQKQRERALHLKRQKGHQTLSANQRTQI
QILVTNVTQEDLAAQDLYPLYSIRWQVEILFKAWKSLFEMDDVRKINQDRLECHLYGTLIEILLSSMVTFQCRHYLYWKHRIEASEYKCMDIVKQALPYL
VSPIKSDSKSVVKILEAIFENARRHGRKDHKEKHESPFDVLGLTYK
Blast result :
Comments
ISHaha1 is 56% aa simialar to ISBce4.
References