ISSen5
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Salmonella enterica | Salmonella enterica sv. Kentucky |
DNA section
IS Length : 1153 bp
Ends
IR Length : 16/19
IRL : AATAGCTGTTCCAAATAGTAGATCACAGGAAGGGAACTCAGTCCTGTTTG
IRR : AATAGCTGATCCGAATACTGCTACATTTTCGCGATGCCATGTCCGTTGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTCACATGC | TA | GGTTAGGTGA | 2 |
DNA sequence
AATAGCTGTTCCAAATAGTAGATCACAGGAAGGGAACTCAGTCCTGTTTGAGCGATCAGATCTATCGCCAAACAAACCCACCACTCGCCCAAGGACTGAG
AATGGCTATCTTAGCACCACTATGCCGCGCTGAGCGCAAGCGCATGCAAAAATTGATTCAAAAAACCAACGATAAGCACTTTGCCAGGCGTCTTATTGCG
ATGTTGATGTTGCATCAAGGCCTGTCGGTTACCCAAGTTCAGCACATCACCGGCGCAGCCCGCTCCAGCATAGGCCGATGGTTGGGCTGGTACACCCAAT
GTGGCATCGATGGACTGAAATCAGAGAAGCCGGGGCGGCCAACCGTCTTGCCTATTAACCCGATATTGCTCTGCCTGTCACTGCTTATCCAGCTTTGTCC
GGAAGACTTTGGTTACCAGCGTAGCCGCTGGAGCAGCGAACTGCTTGCCAAGGTGATTAATGCACAGCTTAAGCTATGCGTCGCCGCATCAACCATTCGC
CGCCTGTTACCCGAAGCAGGCATAGTCTGGCGCCGCTCAGCCCCGACGTTGCGCATTAAAGACCCATACAAAGCGGAGAAAATGGCCGCTATAAATCAGG
CACTTGAGCAGTGCAGTGCTGAGCACCCGGTATTCTATGAAGATGAAGTAGATATCGACCTCAACCCCAAAATCGGGGCGGACTGGATGCCCAAAGGGCA
ACAAAAACGCGTGGTCACCCCGGGTAACAACCGCAAGCACTACTTGGCAGGAGCGCTACATACCAAGACAGGAAAAGTGCTTTATGTGAGCAGCGCCAGC
AAGGCATCGGAGCTGTTTATTGCGGTGCTGGAAAAGCTCAAACGACATTACCGCAAAGCCAAAACTATCACGCTAATTCTGGATAATTACATCATTCACA
AGAGCCGTAAAACCCTGGCTTGGCTCAAGAGCAACCCCAAGTTCAGGTTGTTGTTTCAACCGGTATACTCACCTTGGGTCAACAAGATAGAGCGCTTATG
GTTGGCACTACATGAAACGGTAACCCGTAATCACAGTTGCCGAAACATGCGGGAACTTCTTGGCAAGGTATGGCATTTTATGGAAACCGTTTCGCCTTTT
CCCGGCAACGGACATGGCATCGCGAAAATGTAGCAGTATTCGGATCAGCTATT
AATGGCTATCTTAGCACCACTATGCCGCGCTGAGCGCAAGCGCATGCAAAAATTGATTCAAAAAACCAACGATAAGCACTTTGCCAGGCGTCTTATTGCG
ATGTTGATGTTGCATCAAGGCCTGTCGGTTACCCAAGTTCAGCACATCACCGGCGCAGCCCGCTCCAGCATAGGCCGATGGTTGGGCTGGTACACCCAAT
GTGGCATCGATGGACTGAAATCAGAGAAGCCGGGGCGGCCAACCGTCTTGCCTATTAACCCGATATTGCTCTGCCTGTCACTGCTTATCCAGCTTTGTCC
GGAAGACTTTGGTTACCAGCGTAGCCGCTGGAGCAGCGAACTGCTTGCCAAGGTGATTAATGCACAGCTTAAGCTATGCGTCGCCGCATCAACCATTCGC
CGCCTGTTACCCGAAGCAGGCATAGTCTGGCGCCGCTCAGCCCCGACGTTGCGCATTAAAGACCCATACAAAGCGGAGAAAATGGCCGCTATAAATCAGG
CACTTGAGCAGTGCAGTGCTGAGCACCCGGTATTCTATGAAGATGAAGTAGATATCGACCTCAACCCCAAAATCGGGGCGGACTGGATGCCCAAAGGGCA
ACAAAAACGCGTGGTCACCCCGGGTAACAACCGCAAGCACTACTTGGCAGGAGCGCTACATACCAAGACAGGAAAAGTGCTTTATGTGAGCAGCGCCAGC
AAGGCATCGGAGCTGTTTATTGCGGTGCTGGAAAAGCTCAAACGACATTACCGCAAAGCCAAAACTATCACGCTAATTCTGGATAATTACATCATTCACA
AGAGCCGTAAAACCCTGGCTTGGCTCAAGAGCAACCCCAAGTTCAGGTTGTTGTTTCAACCGGTATACTCACCTTGGGTCAACAAGATAGAGCGCTTATG
GTTGGCACTACATGAAACGGTAACCCGTAATCACAGTTGCCGAAACATGCGGGAACTTCTTGGCAAGGTATGGCATTTTATGGAAACCGTTTCGCCTTTT
CCCGGCAACGGACATGGCATCGCGAAAATGTAGCAGTATTCGGATCAGCTATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 102 | 1133 | + | No |
Chemistry : DDE
ORF sequence :
MAILAPLCRAERKRMQKLIQKTNDKHFARRLIAMLMLHQGLSVTQVQHITGAARSSIGRWLGWYTQCGIDGLKSEKPGRPTVLPINPILLCLSLLIQLCP
EDFGYQRSRWSSELLAKVINAQLKLCVAASTIRRLLPEAGIVWRRSAPTLRIKDPYKAEKMAAINQALEQCSAEHPVFYEDEVDIDLNPKIGADWMPKGQ
QKRVVTPGNNRKHYLAGALHTKTGKVLYVSSASKASELFIAVLEKLKRHYRKAKTITLILDNYIIHKSRKTLAWLKSNPKFRLLFQPVYSPWVNKIERLW
LALHETVTRNHSCRNMRELLGKVWHFMETVSPFPGNGHGIAKM
EDFGYQRSRWSSELLAKVINAQLKLCVAASTIRRLLPEAGIVWRRSAPTLRIKDPYKAEKMAAINQALEQCSAEHPVFYEDEVDIDLNPKIGADWMPKGQ
QKRVVTPGNNRKHYLAGALHTKTGKVLYVSSASKASELFIAVLEKLKRHYRKAKTITLILDNYIIHKSRKTLAWLKSNPKFRLLFQPVYSPWVNKIERLW
LALHETVTRNHSCRNMRELLGKVWHFMETVSPFPGNGHGIAKM
Blast result :
Comments
ISSen5 has been identified on the Salmonella Genomic island 1-J from S. enterica serovar Kentucky strain 19-85.
The putative transposase of ISSen5 harbours 86% and 64% aa identity to that of ISSod16 from Shewanella oneidensis MR-1 and IS630 from Shigella sonnei, respectively.
The putative transposase of ISSen5 harbours 86% and 64% aa identity to that of ISSod16 from Shewanella oneidensis MR-1 and IS630 from Shigella sonnei, respectively.
References
1] Doublet B., (2012) Direct submission