ISSen5

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Salmonella enterica
Salmonella enterica sv. Kentucky
DNA section
IS Length : 1153 bp

Ends


IR Length : 16/19

IRL : AATAGCTGTTCCAAATAGTAGATCACAGGAAGGGAACTCAGTCCTGTTTG
IRR : AATAGCTGATCCGAATACTGCTACATTTTCGCGATGCCATGTCCGTTGCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGTCACATGCTAGGTTAGGTGA2

DNA sequence

AATAGCTGTTCCAAATAGTAGATCACAGGAAGGGAACTCAGTCCTGTTTGAGCGATCAGATCTATCGCCAAACAAACCCACCACTCGCCCAAGGACTGAG
AATGGCTATCTTAGCACCACTATGCCGCGCTGAGCGCAAGCGCATGCAAAAATTGATTCAAAAAACCAACGATAAGCACTTTGCCAGGCGTCTTATTGCG
ATGTTGATGTTGCATCAAGGCCTGTCGGTTACCCAAGTTCAGCACATCACCGGCGCAGCCCGCTCCAGCATAGGCCGATGGTTGGGCTGGTACACCCAAT
GTGGCATCGATGGACTGAAATCAGAGAAGCCGGGGCGGCCAACCGTCTTGCCTATTAACCCGATATTGCTCTGCCTGTCACTGCTTATCCAGCTTTGTCC
GGAAGACTTTGGTTACCAGCGTAGCCGCTGGAGCAGCGAACTGCTTGCCAAGGTGATTAATGCACAGCTTAAGCTATGCGTCGCCGCATCAACCATTCGC
CGCCTGTTACCCGAAGCAGGCATAGTCTGGCGCCGCTCAGCCCCGACGTTGCGCATTAAAGACCCATACAAAGCGGAGAAAATGGCCGCTATAAATCAGG
CACTTGAGCAGTGCAGTGCTGAGCACCCGGTATTCTATGAAGATGAAGTAGATATCGACCTCAACCCCAAAATCGGGGCGGACTGGATGCCCAAAGGGCA
ACAAAAACGCGTGGTCACCCCGGGTAACAACCGCAAGCACTACTTGGCAGGAGCGCTACATACCAAGACAGGAAAAGTGCTTTATGTGAGCAGCGCCAGC
AAGGCATCGGAGCTGTTTATTGCGGTGCTGGAAAAGCTCAAACGACATTACCGCAAAGCCAAAACTATCACGCTAATTCTGGATAATTACATCATTCACA
AGAGCCGTAAAACCCTGGCTTGGCTCAAGAGCAACCCCAAGTTCAGGTTGTTGTTTCAACCGGTATACTCACCTTGGGTCAACAAGATAGAGCGCTTATG
GTTGGCACTACATGAAACGGTAACCCGTAATCACAGTTGCCGAAACATGCGGGAACTTCTTGGCAAGGTATGGCATTTTATGGAAACCGTTTCGCCTTTT
CCCGGCAACGGACATGGCATCGCGAAAATGTAGCAGTATTCGGATCAGCTATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa1021133+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAILAPLCRAERKRMQKLIQKTNDKHFARRLIAMLMLHQGLSVTQVQHITGAARSSIGRWLGWYTQCGIDGLKSEKPGRPTVLPINPILLCLSLLIQLCP
EDFGYQRSRWSSELLAKVINAQLKLCVAASTIRRLLPEAGIVWRRSAPTLRIKDPYKAEKMAAINQALEQCSAEHPVFYEDEVDIDLNPKIGADWMPKGQ
QKRVVTPGNNRKHYLAGALHTKTGKVLYVSSASKASELFIAVLEKLKRHYRKAKTITLILDNYIIHKSRKTLAWLKSNPKFRLLFQPVYSPWVNKIERLW
LALHETVTRNHSCRNMRELLGKVWHFMETVSPFPGNGHGIAKM

 

Blast result :
Comments
ISSen5 has been identified on the Salmonella Genomic island 1-J from S. enterica serovar Kentucky strain 19-85.
The putative transposase of ISSen5 harbours 86% and 64% aa identity to that of ISSod16 from Shewanella oneidensis MR-1 and IS630 from Shigella sonnei, respectively.
References
1] Doublet B., (2012) Direct submission