ISLbi1
- Family ISNCY
- Group ISLbi1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010842 | ND | Leptospira biflexa | Leptospira biflexa serovar Patoc 'Patoc 1 (Ames)' plasmid p74 Leptospira biflexa serovar Patoc 'Patoc 1 (Ames)' chromosome I Leptospira biflexa serovar Patoc 'Patoc 1 (Paris)' plasmid p74 |
DNA section
IS Length : 1523 bp
Ends
IR Length : 31/48
IRL : CTTACTGCATCACGTAAGAATCTACTCGAAACACTAGTCGTTGCATCATC
IRR : CGTATTGAATCTTGTTTTATCTACTCGAAATGTTAAGTGGTGAATCAAAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACATATTGTT | AACGT | AATCAACCGA | 5 |
| TGATGAAGAT | CCTTC | CAATACCTAT | 5 |
| CAATACAGTC | TCTGT | CAAAACCTTT | 5 |
| TATTATCGGA | AGAAG | CATGTTGCGT | 5 |
| TATTATCGGA | AGAAG | CATGTTGCGT | 5 |
DNA sequence
CTTACTGCATCACGTAAGAATCTACTCGAAACACTAGTCGTTGCATCATCTTAAAATCTACTCCAAATTAGATAAGGAAACGATTCACTCATGTGCAGGT
GATGTCCATGAAGCAATCGAAGATGGTGCGTTCTATGTTGGTTCAAGTCTTCAAAGAGAAGTACTTTTGGGCTTCGAAAAAAGAAAAAAGTCTCATACTC
GACCAGTTCGTTGAAGCTACTGGATTCAATCGATCCTATGCCAGAACCGTTCTTAGAAAGAAAAAAGACAATCTCATCAAACTGAGACCGAGAAAGAAGC
GTCTATCTAACTATGATGATGACGTCAGATTCTATTTAGAGAAGATCTGGGAGATCCTGGATAGAATTTGTGGGAAAAGACTCGTGATGGCATTGCCAGA
CGTTTTATCCAAACTTGAACAGTTCAAAGTATTTAAAATTGATAAAACAACCAAAGAAAAACTTCTCTCAATCAGCTCTGCCACTGTAGATCGGTTATTG
AAACCTGCCAGGAAAAAACTTGGTCGCAAAGGCACTTCTACAACGAAGCAACCTAAATACCTAATTGATCGGATCCCAATCAAAACGTTCGGTGAATGGA
AAAGTTCTCTACCTGGCTTTGTTCAAATCGATCTAGTAGCCCATAATGGTGGAAATGTATTTGGAGGATTTTATTCAACGCTTGCAGCAACTGATGTTTG
TACGGGATGGACAGTTTGTATACTGGTGAAAGATAAAACTCAATTCCAGATGCTAAAAGCATTAATAAAACTGAAAAAAATATTACCCTTCCCACTTTTG
GGAATCCATTCCGATAACGGTGCAGAATTTATTAATCAAACAATCTTAACGTATGCAGAAAGAAACGACATCCAATTCACTCGTGGAAGACCATATAAAA
AGAATGATAACCCACATATTGAACAGAAGAATTACAGTGTTGTGAGAAGGAATACTGGATATTTGCGTATTGAAAATCAAAGCCAAGCAGATATTATCAG
ATCTCTTTACCAAGATTTAAATACTTACAATAATTACTTTTTACCAGTAATGATTCTAAAGGAGAAACATAGGATTGGTTCTAAAGCAATACGAAGGTAT
GACGAAGCAAAATCACCATACCGAAGGATACTGGCTAGAAAAGATATTTCGAAAACGATAAAAGCTTCTATGAAAAAGATTTACGAGAAGTTGAATATTT
TCGAATTAAAGAATCAGGTCAATCATTGGCAAAATGAAATTGTGAAGATTGCTGCCCCTATTCGTAATCCAATAGACAAAGTGAAAGTTAGAAGGAAGAA
AGGAATCGTTCATACAATTCCGAAATGGAGACGAGAAGTAAATTCAGATACAAAAAATCCATTCCTTGAAAGACAACGTGTTGAAGAAATGAGGCGAGCT
GCAGAACAAGTTTGGGCAAAAAGAAAATAGCTTGGAATCTTTTTGCTCTCTGTTATATTTGGAGTAGATTTTTATTTGATTCACCACTTAACATTTCGAG
TAGATAAAACAAGATTCAATACG
GATGTCCATGAAGCAATCGAAGATGGTGCGTTCTATGTTGGTTCAAGTCTTCAAAGAGAAGTACTTTTGGGCTTCGAAAAAAGAAAAAAGTCTCATACTC
GACCAGTTCGTTGAAGCTACTGGATTCAATCGATCCTATGCCAGAACCGTTCTTAGAAAGAAAAAAGACAATCTCATCAAACTGAGACCGAGAAAGAAGC
GTCTATCTAACTATGATGATGACGTCAGATTCTATTTAGAGAAGATCTGGGAGATCCTGGATAGAATTTGTGGGAAAAGACTCGTGATGGCATTGCCAGA
CGTTTTATCCAAACTTGAACAGTTCAAAGTATTTAAAATTGATAAAACAACCAAAGAAAAACTTCTCTCAATCAGCTCTGCCACTGTAGATCGGTTATTG
AAACCTGCCAGGAAAAAACTTGGTCGCAAAGGCACTTCTACAACGAAGCAACCTAAATACCTAATTGATCGGATCCCAATCAAAACGTTCGGTGAATGGA
AAAGTTCTCTACCTGGCTTTGTTCAAATCGATCTAGTAGCCCATAATGGTGGAAATGTATTTGGAGGATTTTATTCAACGCTTGCAGCAACTGATGTTTG
TACGGGATGGACAGTTTGTATACTGGTGAAAGATAAAACTCAATTCCAGATGCTAAAAGCATTAATAAAACTGAAAAAAATATTACCCTTCCCACTTTTG
GGAATCCATTCCGATAACGGTGCAGAATTTATTAATCAAACAATCTTAACGTATGCAGAAAGAAACGACATCCAATTCACTCGTGGAAGACCATATAAAA
AGAATGATAACCCACATATTGAACAGAAGAATTACAGTGTTGTGAGAAGGAATACTGGATATTTGCGTATTGAAAATCAAAGCCAAGCAGATATTATCAG
ATCTCTTTACCAAGATTTAAATACTTACAATAATTACTTTTTACCAGTAATGATTCTAAAGGAGAAACATAGGATTGGTTCTAAAGCAATACGAAGGTAT
GACGAAGCAAAATCACCATACCGAAGGATACTGGCTAGAAAAGATATTTCGAAAACGATAAAAGCTTCTATGAAAAAGATTTACGAGAAGTTGAATATTT
TCGAATTAAAGAATCAGGTCAATCATTGGCAAAATGAAATTGTGAAGATTGCTGCCCCTATTCGTAATCCAATAGACAAAGTGAAAGTTAGAAGGAAGAA
AGGAATCGTTCATACAATTCCGAAATGGAGACGAGAAGTAAATTCAGATACAAAAAATCCATTCCTTGAAAGACAACGTGTTGAAGAAATGAGGCGAGCT
GCAGAACAAGTTTGGGCAAAAAGAAAATAGCTTGGAATCTTTTTGCTCTCTGTTATATTTGGAGTAGATTTTTATTTGATTCACCACTTAACATTTCGAG
TAGATAAAACAAGATTCAATACG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1329 bp | 442 aa | 102 | 1430 | + | No |
Chemistry : Unknow
ORF sequence :
MSMKQSKMVRSMLVQVFKEKYFWASKKEKSLILDQFVEATGFNRSYARTVLRKKKDNLIKLRPRKKRLSNYDDDVRFYLEKIWEILDRICGKRLVMALPD
VLSKLEQFKVFKIDKTTKEKLLSISSATVDRLLKPARKKLGRKGTSTTKQPKYLIDRIPIKTFGEWKSSLPGFVQIDLVAHNGGNVFGGFYSTLAATDVC
TGWTVCILVKDKTQFQMLKALIKLKKILPFPLLGIHSDNGAEFINQTILTYAERNDIQFTRGRPYKKNDNPHIEQKNYSVVRRNTGYLRIENQSQADIIR
SLYQDLNTYNNYFLPVMILKEKHRIGSKAIRRYDEAKSPYRRILARKDISKTIKASMKKIYEKLNIFELKNQVNHWQNEIVKIAAPIRNPIDKVKVRRKK
GIVHTIPKWRREVNSDTKNPFLERQRVEEMRRAAEQVWAKRK
VLSKLEQFKVFKIDKTTKEKLLSISSATVDRLLKPARKKLGRKGTSTTKQPKYLIDRIPIKTFGEWKSSLPGFVQIDLVAHNGGNVFGGFYSTLAATDVC
TGWTVCILVKDKTQFQMLKALIKLKKILPFPLLGIHSDNGAEFINQTILTYAERNDIQFTRGRPYKKNDNPHIEQKNYSVVRRNTGYLRIENQSQADIIR
SLYQDLNTYNNYFLPVMILKEKHRIGSKAIRRYDEAKSPYRRILARKDISKTIKASMKKIYEKLNIFELKNQVNHWQNEIVKIAAPIRNPIDKVKVRRKK
GIVHTIPKWRREVNSDTKNPFLERQRVEEMRRAAEQVWAKRK
Blast result :
Comments
ISLbi1 is 60% aa similar to ISKol11.
References
1] ISfinder submission (2012)
2] Picardeau,M., Bulach,D.M., Bouchier,C., Zuerner,R.L., Zidane,N., Wilson,P.J., Creno,S., Kuczek,E.S., Bommezzadri,S., Davis,J.C., McGrath,A., Johnson,M.J., Boursaux-Eude,C., Seemann,T., Rouy,Z., Coppel,R.L., Rood,J.I., Lajus,A., Davies,J.K., Medigue,C. and Adler,B.(2008) PLoS ONE 3 (2), E1607.
2] Picardeau,M., Bulach,D.M., Bouchier,C., Zuerner,R.L., Zidane,N., Wilson,P.J., Creno,S., Kuczek,E.S., Bommezzadri,S., Davis,J.C., McGrath,A., Johnson,M.J., Boursaux-Eude,C., Seemann,T., Rouy,Z., Coppel,R.L., Rood,J.I., Lajus,A., Davies,J.K., Medigue,C. and Adler,B.(2008) PLoS ONE 3 (2), E1607.