ISSoEn2
- Family IS256
- Group
Isoform Synonym(s) ISsope2
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AM921790 | ND | Primary endosymbiont | Primary endosymbiont of Sitophilus oryzae |
DNA section
IS Length : 1315 bp
Ends
IR Length : 21/30
IRL : GAGCCTGTTTAGAAATTTGTGTATTTGCCTGATTTTGATATGTTCAATCC
IRR : GACCCTGTACACGATTCTGTGTAAATGCCTTTTCTCAGAAGTGACCGTCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGATGACCG | GCTTTTTT | TTATCTTTTT | 8 |
| GCGACGACCG | CGATCCCT | ATTTTTATCC | 8 |
| GGGCTTTGTT | GAATAAAT | CGAACTTTTA | 8 |
| TACAGCAAAA | AACAGAAAG | CAGCACAAAC | 9 |
| AATTCCTTTT | AGCGGTTG | CGGGCCATAC | 8 |
| ATGGCAATGA | GC | TTTATTATCG | 2 |
| CACTACCTGA | CTTTGTTGAA | 0 |
DNA sequence
GAGCCTGTTTAGAAATTTGTGTATTTGCCTGATTTTGATATGTTCAATCCAACATCAAAAACAGGTTAATTTATGGACGAAAAACAGTTGCAGGCTCTGG
CTAACGAACTGGCCAAAAATCTCAAAACCCCTGAAGATCTCAGTCACTTCGATCGGCTGCTGAAAAAAATTAGCGTCGAAGCAGCTCTCAATGCCGAAAT
GACCCATCACCTCGGCTACGATAAAAATCAGCCTAAACCGGGGACCAACGCCCGCAACGGATATTCCACAAAAACCGTTATCACTGGCGATGGCCCGCTG
GCGCTGCGTACTCCGCGCGATCGTGACGGTTCCTTTGAACCGCAACTGGTGAAGAAGAACCAGACCCGGATTACCGGGATGGATAACCAGATTTTATCGT
TGTACGCCAAAGGGATGACCACCCGCGAGATCGCCGCCGCGTTCAAAGAGCTGTATGACGCCGATGTCTCGCCGGCGCTGGTCTCAAAGGTCACCGATGC
GGTCATGGAGCAGGTTGTCGAATGGCAAAACCGGCCTCTGGATGCAGTCTATCCCATTGTTTATCTTGACTGTATCGTTCTAAAAGTCCGGCAGGACAGC
CGCATCATCAACAAATCTGTGTTCCTGGCGCTGGGCATCAACATCGAAGGCCAGAAAGAGTTGCTAGGTATGTGGCTGGCCGAAAATGAAGGCGCAAAGT
TCTGGCTGAACGTGCTGACAGAGCTGAAAAACCGCGGCCTGAACGATATCCTTATCGCCTGCGTAGACGGGCTGAAAGGTTTCCCTGACGCTATTAACGC
GGTGTATCCGGAGGCGCGGCTCCAGCTGTGTATCGTACATATGGTGCGCAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAGGCCGTCACCCGCGAC
CTGAAAGCTATCTATCAGGCCCCTACGAAAGAAGCCGGCTTGCAGGCGCTGGAAGCGTTCTCCAGTGCCTGGGACATCCGCTACCCGCAAATAAGTCGAA
GCTGGCAGACAAACTGGGCCAATCTGGCCACGTTCTTTGCCTACCCAACGGACATCCGCAAGGTGATCTACACGACCAACGCCATCGAGTCGTTAAACAG
CGTGATCCGGCATGCCATCAAAAAGCGCAAGGTGTTCCCGACCGACGACGCAGTGAAAAAGGTGGTGTGGCTGGCGATACAGGCGGCCTCACAGAAATGG
ACAATGCCTTTGAGGGACTGGCGCATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGACCGCCTGGACGGTCACTTCTGAGAAAAGGCATTTACACAGA
ATCGTGTACAGGGTC
CTAACGAACTGGCCAAAAATCTCAAAACCCCTGAAGATCTCAGTCACTTCGATCGGCTGCTGAAAAAAATTAGCGTCGAAGCAGCTCTCAATGCCGAAAT
GACCCATCACCTCGGCTACGATAAAAATCAGCCTAAACCGGGGACCAACGCCCGCAACGGATATTCCACAAAAACCGTTATCACTGGCGATGGCCCGCTG
GCGCTGCGTACTCCGCGCGATCGTGACGGTTCCTTTGAACCGCAACTGGTGAAGAAGAACCAGACCCGGATTACCGGGATGGATAACCAGATTTTATCGT
TGTACGCCAAAGGGATGACCACCCGCGAGATCGCCGCCGCGTTCAAAGAGCTGTATGACGCCGATGTCTCGCCGGCGCTGGTCTCAAAGGTCACCGATGC
GGTCATGGAGCAGGTTGTCGAATGGCAAAACCGGCCTCTGGATGCAGTCTATCCCATTGTTTATCTTGACTGTATCGTTCTAAAAGTCCGGCAGGACAGC
CGCATCATCAACAAATCTGTGTTCCTGGCGCTGGGCATCAACATCGAAGGCCAGAAAGAGTTGCTAGGTATGTGGCTGGCCGAAAATGAAGGCGCAAAGT
TCTGGCTGAACGTGCTGACAGAGCTGAAAAACCGCGGCCTGAACGATATCCTTATCGCCTGCGTAGACGGGCTGAAAGGTTTCCCTGACGCTATTAACGC
GGTGTATCCGGAGGCGCGGCTCCAGCTGTGTATCGTACATATGGTGCGCAACAGCCTGCGGTTCGTCTCCTGGAAGGACTACAAGGCCGTCACCCGCGAC
CTGAAAGCTATCTATCAGGCCCCTACGAAAGAAGCCGGCTTGCAGGCGCTGGAAGCGTTCTCCAGTGCCTGGGACATCCGCTACCCGCAAATAAGTCGAA
GCTGGCAGACAAACTGGGCCAATCTGGCCACGTTCTTTGCCTACCCAACGGACATCCGCAAGGTGATCTACACGACCAACGCCATCGAGTCGTTAAACAG
CGTGATCCGGCATGCCATCAAAAAGCGCAAGGTGTTCCCGACCGACGACGCAGTGAAAAAGGTGGTGTGGCTGGCGATACAGGCGGCCTCACAGAAATGG
ACAATGCCTTTGAGGGACTGGCGCATGGCAATGAGCCGCTTTATTATCGAGTTCGGTGACCGCCTGGACGGTCACTTCTGAGAAAAGGCATTTACACAGA
ATCGTGTACAGGGTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1209 bp | 402 aa | 73 | 1281 | + | No |
Chemistry : DDE
ORF sequence :
MDEKQLQALANELAKNLKTPEDLSHFDRLLKKISVEAALNAEMTHHLGYDKNQPKPGTNARNGYSTKTVITGDGPLALRTPRDRDGSFEPQLVKKNQTRI
TGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVVEWQNRPLDAVYPIVYLDCIVLKVRQDSRIINKSVFLALGINIEGQKELLGM
WLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINAVYPEARLQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTKEAGLQALEAFSSAW
DIRYPQISRSWQTNWANLATFFAYPTDIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDDAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDG
HF
TGMDNQILSLYAKGMTTREIAAAFKELYDADVSPALVSKVTDAVMEQVVEWQNRPLDAVYPIVYLDCIVLKVRQDSRIINKSVFLALGINIEGQKELLGM
WLAENEGAKFWLNVLTELKNRGLNDILIACVDGLKGFPDAINAVYPEARLQLCIVHMVRNSLRFVSWKDYKAVTRDLKAIYQAPTKEAGLQALEAFSSAW
DIRYPQISRSWQTNWANLATFFAYPTDIRKVIYTTNAIESLNSVIRHAIKKRKVFPTDDAVKKVVWLAIQAASQKWTMPLRDWRMAMSRFIIEFGDRLDG
HF
Blast result :
Comments
ISSoEn2 is 97% aa similar to IS1414. There are 208 complete copies in the genome.
References
1] ISfinder submission (2011)
2] Kelly Oakeson (2011) Direct submission
3] Gil,R., Belda,E., Gosalbes,M.J., Delaye,L., Vallier,A., Vincent-Monegat,C., Heddi,A., Silva,F.J., Moya,A. and Latorre,A.(2008) Int. Microbiol. 11 (1), 41-48.
2] Kelly Oakeson (2011) Direct submission
3] Gil,R., Belda,E., Gosalbes,M.J., Delaye,L., Vallier,A., Vincent-Monegat,C., Heddi,A., Silva,F.J., Moya,A. and Latorre,A.(2008) Int. Microbiol. 11 (1), 41-48.