ISEc28

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FJ187822 ND Escherichia coli
Escherichia coli plasmid pCOP1
DNA section
IS Length : 897 bp

Ends


IR Length :

IRL : CTGGATGGACGAACAAGCCATTAAGCAGTGGCATTGCCTGGTCCACCATG
IRR : GGCGTTGTTGACCCAATCCGTCGCTGGATGGCCGTTCCCCAACCCGTTGA

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTGGATGGACGAACAAGCCATTAAGCAGTGGCATTGCCTGGTCCACCATGGCCGCCGAGGGAGAGGTTTCCACTACAGTGACACCGCCATTGAGACGGCC
CTGATGCTAAAAGGCTTGTTCAAGTTGCCGCTGCGGGCGCTAGAAGGCTTCATTAACTCGTTGTTCCAACTGATGGCGGTGCCTTTGCAGTCGCCGGACT
ATAGCTGTATCAGCAAGCGCGCCAAGACCGTCGACATCAAGTACCGCCTCCCCAGCCAAGGCCCGGTGGCTCACTTGGTCATTGATGCCACCGGCCTCAA
GGTCTATGGCGAAGGCGAATGGAAAATTCGCAAACACGGCAAGGAGAAGCGACGAGTGTGGCGCAAGCTCCACTTGGCGGTGGATGCCACAACCCATGCG
GTCATCGCTGCCGAAGTCAGCCTGGAGACGGTGGCGGATAACGAGGTGTTACCGACGTTGCTCAACCCCTTACGACGCAAGATAAAACAGGTCAGCGCCG
ATGGTGCGTATGACACCAAGGCCTGTCATGCGCTACTGAAGAAAAAGGGGGCGAAAGCCACCATACCGCCGAGAAAAAATGCGGCACCGTGGGAGGAAGG
CCATCCCCGCAACGAGGCGGTGACGGCGCTCAAGGCCGGTGAACTGAAGCAATGGAAGAAAGACTCCGGCTATCACCAGCGCTCGATAGCCGAGACCGCC
ATGTACCGGTTCAAGCAACTCATCGGGCCAACGCTGAGCCTGCGGAACTACAACGCCCAGGTGGGCGAAATCCTGGCTGGCGTGAAGGTGATGAACAAGC
TGATAGGGCTTGGTATGCCTGTTCGCCAGCCAGTGAATTGAGTGGTATCAACGGGTTGGGGAACGGCCATCCAGCGACGGATTGGGTCAACAACGCC
Protein section
ORF number : 0

 

Comments
ISEc28 is a 5' truncated IS.
The partial transposase is 95% aa similar to ISEc35.
References
1] Submitted by ISfinder (2011).
2] Bercot,B., Poirel,L. and Nordmann,P. (2008) Antimicrob. Agents Chemother. 52 (12), 4526-4527