ISCsa4

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009437 ND Caldicellulosiruptor saccharolyticus
Caldicellulosiruptor kronotskyensis 2002
Caldicellulosiruptor bescii DSM 6725
Caldicellulosiruptor lactoaceticus 6A
Caldicellulosiruptor saccharolyticus DSM 8903
Caldicellulosiruptor owensensis OL
Caldicellulosiruptor krisjanssonii 177R1B
DNA section
IS Length : 1990 bp

Ends


Left end : AGCATTCCTGTAATGAACGAAAATGAGTGAAAATGAAGAGAAATGAGATTTGAAGAGATAAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAAC
Right end : AAAGCAATAATAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTGTATATACCAGGGAAGATA0
TCTGAACTATGAGGGATGTAA0

DNA sequence

AGCATTCCTGTAATGAACGAAAATGAGTGAAAATGAAGAGAAATGAGATTTGAAGAGATAAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAAC
TTACGACAAAACACAACAAAGGAGGTACCCTCTTTGAAGTATACACAAAATGAAAAGATATTACAAGTAACAGAGAGAACTTTAGTTGTAGGAGTAGATA
TAGCAAAGGAAAGGCATGTAGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGGAAAGAAGGTATGGAGAAATT
TTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGACAACATGATAGTAGGGATAGAGCCTACAGGGCATTACTGGCTGTGCTTTGAGCAGTAT
CTGAGAGAGAATGGCATAAAAGTGGTTTTAGTGAATCCTTTTCACGTGAAGAGGAGCAAGGAGCTTGATGATAATACGCAAACTAAGAGCGATATAAAGG
ATCCGAAGACGATAGCGATGCTTGTGAAGGATGGAAGATATACAGAGCCAAATATACCCGAGGGTATATATGCTGAGATGAGAGTAGCGATGAACATATA
TGAAAGGCTTCAAAAACAGCTGAACGTTTTAAAAAATCAAATAATCAACTGGCTCGATATGTATTTTCCAGAGTTTTTAGAAGTATTTTCTGATTGGGAA
GGCAAGGTAGCGCTATTGACCCTAAAAGAGATGCCATTGCCTTGTGATGTAGTGGAAAATGAAGTGGAAGGGATTATAGAGTACTGGCGTGACAAAGTAG
ATAGGCGAGCGGTTAGTCGCAGGAGGGCGATGGATTTAGTAGAGGCTGCCAAAAGGAGTATAGGTAAAAAAGAAGGGAGAAAGCTGGCAAGACAAGAGAT
AAAATATTTGCTGAGTCAATATGAGCTTTTAAAGAAGCAGATAGAAGAGATAGAAGCCGAGATGGCAGAGCTTTTGAGAGAGGTGCCGAATGGAGAGGAA
CTGCTTAAAATAAAAGGTGTTGGTGTAAAAACGGCAGTTGGCTTTATTTCTGAGGTTGGAGATATAAAGAGGTATGAGGATGCGAGACAGATACAGAAAT
TGGCGGGACTCAATATAGTTGAGAATAGTTCTGGCAAGTACAAGGGTCAGACGTGTATAAGTAAAAGAGGGCGAGGGAGGCTCAGAAGTAGCTTGTTCAA
GGCCATGATTACAATAGTAGCAAAGAATGAAGAATTTAAGCAGCTGCACAGGTATTACACCACGCGAGAGAACAATCCCTTGAAGAAGAAGCAATCATTA
ATAGCACTGTGTTGTAAATTGATAAGGGTATTTTATGCGATTTTGAAAAAAGGCGTAAAGTATGATGGGAACAAGATGTTGAGCGATATAAAGAGAGAGG
CTTTAGCAAGGACAGCGTGAAGTGAAGTGAGAAAAATTGCTTGAACATTCTTAGTTTAAAGCAGGAGAAATAGTTTGAGTGATTCACATCTTGAGGGGGT
AAAGAAATTCTTAGCTTTGCGAGGAGATTAAGTCATGTCGAGTAGCAAAGCGCCCCTTTTGGTAGGAGTTCACATCTTAAACAATGTATAAAGAGTAACA
AGTGAAGAAAGAAGGATAAAATGATTCTTTATAAAAAGTAAGTAGATTGGAAAATGTGAGCGGGTGGTCAGAGTACATCCCCCATACGGGCGAAGACCCT
GCATACGAGCATAACTGACGTCCACGCCATGGTAGATGGGACGAGGGAATTGAGGGCAAGTGAGAAAAGACCCTGAGAGACATGAGAGGGTAAACGCCAT
GGTTATTGTGGATAAATACCCGCCGTAATATGGTAGAATAACAAGATAAATACAAGATGGAGGCCAATTCTAAGTTGGGCATGGTAGAATAAAGCAATAA
TAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa1341420+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKYTQNEKILQVTERTLVVGVDIAKERHVGRAFDFRGVELGKRIEFENRKEGMEKFLDWANKIMKANGKDNMIVGIEPTGHYWLCFEQYLRENGIKVVLV
NPFHVKRSKELDDNTQTKSDIKDPKTIAMLVKDGRYTEPNIPEGIYAEMRVAMNIYERLQKQLNVLKNQIINWLDMYFPEFLEVFSDWEGKVALLTLKEM
PLPCDVVENEVEGIIEYWRDKVDRRAVSRRRAMDLVEAAKRSIGKKEGRKLARQEIKYLLSQYELLKKQIEEIEAEMAELLREVPNGEELLKIKGVGVKT
AVGFISEVGDIKRYEDARQIQKLAGLNIVENSSGKYKGQTCISKRGRGRLRSSLFKAMITIVAKNEEFKQLHRYYTTRENNPLKKKQSLIALCCKLIRVF
YAILKKGVKYDGNKMLSDIKREALARTA

 

Blast result :
Comments
ISCsa4 is 69% aa similar to IS653.
References
1] ISfinder annotation (2011)
2] Miriam land (2011).