ISCsa4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009437 | ND | Caldicellulosiruptor saccharolyticus | Caldicellulosiruptor kronotskyensis 2002 Caldicellulosiruptor bescii DSM 6725 Caldicellulosiruptor lactoaceticus 6A Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor owensensis OL Caldicellulosiruptor krisjanssonii 177R1B |
DNA section
IS Length : 1990 bp
Ends
Left end : AGCATTCCTGTAATGAACGAAAATGAGTGAAAATGAAGAGAAATGAGATTTGAAGAGATAAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAAC
Right end : AAAGCAATAATAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGTATATACC | AGGGAAGATA | 0 | |
TCTGAACTATG | AGGGATGTAA | 0 |
DNA sequence
AGCATTCCTGTAATGAACGAAAATGAGTGAAAATGAAGAGAAATGAGATTTGAAGAGATAAGGTACCTCCTGGTAAAATACAGAATGTAAGTTGTACAAC
TTACGACAAAACACAACAAAGGAGGTACCCTCTTTGAAGTATACACAAAATGAAAAGATATTACAAGTAACAGAGAGAACTTTAGTTGTAGGAGTAGATA
TAGCAAAGGAAAGGCATGTAGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGGAAAGAAGGTATGGAGAAATT
TTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGACAACATGATAGTAGGGATAGAGCCTACAGGGCATTACTGGCTGTGCTTTGAGCAGTAT
CTGAGAGAGAATGGCATAAAAGTGGTTTTAGTGAATCCTTTTCACGTGAAGAGGAGCAAGGAGCTTGATGATAATACGCAAACTAAGAGCGATATAAAGG
ATCCGAAGACGATAGCGATGCTTGTGAAGGATGGAAGATATACAGAGCCAAATATACCCGAGGGTATATATGCTGAGATGAGAGTAGCGATGAACATATA
TGAAAGGCTTCAAAAACAGCTGAACGTTTTAAAAAATCAAATAATCAACTGGCTCGATATGTATTTTCCAGAGTTTTTAGAAGTATTTTCTGATTGGGAA
GGCAAGGTAGCGCTATTGACCCTAAAAGAGATGCCATTGCCTTGTGATGTAGTGGAAAATGAAGTGGAAGGGATTATAGAGTACTGGCGTGACAAAGTAG
ATAGGCGAGCGGTTAGTCGCAGGAGGGCGATGGATTTAGTAGAGGCTGCCAAAAGGAGTATAGGTAAAAAAGAAGGGAGAAAGCTGGCAAGACAAGAGAT
AAAATATTTGCTGAGTCAATATGAGCTTTTAAAGAAGCAGATAGAAGAGATAGAAGCCGAGATGGCAGAGCTTTTGAGAGAGGTGCCGAATGGAGAGGAA
CTGCTTAAAATAAAAGGTGTTGGTGTAAAAACGGCAGTTGGCTTTATTTCTGAGGTTGGAGATATAAAGAGGTATGAGGATGCGAGACAGATACAGAAAT
TGGCGGGACTCAATATAGTTGAGAATAGTTCTGGCAAGTACAAGGGTCAGACGTGTATAAGTAAAAGAGGGCGAGGGAGGCTCAGAAGTAGCTTGTTCAA
GGCCATGATTACAATAGTAGCAAAGAATGAAGAATTTAAGCAGCTGCACAGGTATTACACCACGCGAGAGAACAATCCCTTGAAGAAGAAGCAATCATTA
ATAGCACTGTGTTGTAAATTGATAAGGGTATTTTATGCGATTTTGAAAAAAGGCGTAAAGTATGATGGGAACAAGATGTTGAGCGATATAAAGAGAGAGG
CTTTAGCAAGGACAGCGTGAAGTGAAGTGAGAAAAATTGCTTGAACATTCTTAGTTTAAAGCAGGAGAAATAGTTTGAGTGATTCACATCTTGAGGGGGT
AAAGAAATTCTTAGCTTTGCGAGGAGATTAAGTCATGTCGAGTAGCAAAGCGCCCCTTTTGGTAGGAGTTCACATCTTAAACAATGTATAAAGAGTAACA
AGTGAAGAAAGAAGGATAAAATGATTCTTTATAAAAAGTAAGTAGATTGGAAAATGTGAGCGGGTGGTCAGAGTACATCCCCCATACGGGCGAAGACCCT
GCATACGAGCATAACTGACGTCCACGCCATGGTAGATGGGACGAGGGAATTGAGGGCAAGTGAGAAAAGACCCTGAGAGACATGAGAGGGTAAACGCCAT
GGTTATTGTGGATAAATACCCGCCGTAATATGGTAGAATAACAAGATAAATACAAGATGGAGGCCAATTCTAAGTTGGGCATGGTAGAATAAAGCAATAA
TAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAG
TTACGACAAAACACAACAAAGGAGGTACCCTCTTTGAAGTATACACAAAATGAAAAGATATTACAAGTAACAGAGAGAACTTTAGTTGTAGGAGTAGATA
TAGCAAAGGAAAGGCATGTAGGCAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAATAGGAAAGAAGGTATGGAGAAATT
TTTGGATTGGGCAAATAAGATAATGAAAGCAAATGGCAAAGACAACATGATAGTAGGGATAGAGCCTACAGGGCATTACTGGCTGTGCTTTGAGCAGTAT
CTGAGAGAGAATGGCATAAAAGTGGTTTTAGTGAATCCTTTTCACGTGAAGAGGAGCAAGGAGCTTGATGATAATACGCAAACTAAGAGCGATATAAAGG
ATCCGAAGACGATAGCGATGCTTGTGAAGGATGGAAGATATACAGAGCCAAATATACCCGAGGGTATATATGCTGAGATGAGAGTAGCGATGAACATATA
TGAAAGGCTTCAAAAACAGCTGAACGTTTTAAAAAATCAAATAATCAACTGGCTCGATATGTATTTTCCAGAGTTTTTAGAAGTATTTTCTGATTGGGAA
GGCAAGGTAGCGCTATTGACCCTAAAAGAGATGCCATTGCCTTGTGATGTAGTGGAAAATGAAGTGGAAGGGATTATAGAGTACTGGCGTGACAAAGTAG
ATAGGCGAGCGGTTAGTCGCAGGAGGGCGATGGATTTAGTAGAGGCTGCCAAAAGGAGTATAGGTAAAAAAGAAGGGAGAAAGCTGGCAAGACAAGAGAT
AAAATATTTGCTGAGTCAATATGAGCTTTTAAAGAAGCAGATAGAAGAGATAGAAGCCGAGATGGCAGAGCTTTTGAGAGAGGTGCCGAATGGAGAGGAA
CTGCTTAAAATAAAAGGTGTTGGTGTAAAAACGGCAGTTGGCTTTATTTCTGAGGTTGGAGATATAAAGAGGTATGAGGATGCGAGACAGATACAGAAAT
TGGCGGGACTCAATATAGTTGAGAATAGTTCTGGCAAGTACAAGGGTCAGACGTGTATAAGTAAAAGAGGGCGAGGGAGGCTCAGAAGTAGCTTGTTCAA
GGCCATGATTACAATAGTAGCAAAGAATGAAGAATTTAAGCAGCTGCACAGGTATTACACCACGCGAGAGAACAATCCCTTGAAGAAGAAGCAATCATTA
ATAGCACTGTGTTGTAAATTGATAAGGGTATTTTATGCGATTTTGAAAAAAGGCGTAAAGTATGATGGGAACAAGATGTTGAGCGATATAAAGAGAGAGG
CTTTAGCAAGGACAGCGTGAAGTGAAGTGAGAAAAATTGCTTGAACATTCTTAGTTTAAAGCAGGAGAAATAGTTTGAGTGATTCACATCTTGAGGGGGT
AAAGAAATTCTTAGCTTTGCGAGGAGATTAAGTCATGTCGAGTAGCAAAGCGCCCCTTTTGGTAGGAGTTCACATCTTAAACAATGTATAAAGAGTAACA
AGTGAAGAAAGAAGGATAAAATGATTCTTTATAAAAAGTAAGTAGATTGGAAAATGTGAGCGGGTGGTCAGAGTACATCCCCCATACGGGCGAAGACCCT
GCATACGAGCATAACTGACGTCCACGCCATGGTAGATGGGACGAGGGAATTGAGGGCAAGTGAGAAAAGACCCTGAGAGACATGAGAGGGTAAACGCCAT
GGTTATTGTGGATAAATACCCGCCGTAATATGGTAGAATAACAAGATAAATACAAGATGGAGGCCAATTCTAAGTTGGGCATGGTAGAATAAAGCAATAA
TAACAATATCAAGAACAAAATTGTTTGTTTCGATAACGAAATTTAAAGAAACCGTGAGATATTTTGAGAAAATCAAAGGTATATTGAGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 134 | 1420 | + | No |
Chemistry : DEDD
ORF sequence :
MKYTQNEKILQVTERTLVVGVDIAKERHVGRAFDFRGVELGKRIEFENRKEGMEKFLDWANKIMKANGKDNMIVGIEPTGHYWLCFEQYLRENGIKVVLV
NPFHVKRSKELDDNTQTKSDIKDPKTIAMLVKDGRYTEPNIPEGIYAEMRVAMNIYERLQKQLNVLKNQIINWLDMYFPEFLEVFSDWEGKVALLTLKEM
PLPCDVVENEVEGIIEYWRDKVDRRAVSRRRAMDLVEAAKRSIGKKEGRKLARQEIKYLLSQYELLKKQIEEIEAEMAELLREVPNGEELLKIKGVGVKT
AVGFISEVGDIKRYEDARQIQKLAGLNIVENSSGKYKGQTCISKRGRGRLRSSLFKAMITIVAKNEEFKQLHRYYTTRENNPLKKKQSLIALCCKLIRVF
YAILKKGVKYDGNKMLSDIKREALARTA
NPFHVKRSKELDDNTQTKSDIKDPKTIAMLVKDGRYTEPNIPEGIYAEMRVAMNIYERLQKQLNVLKNQIINWLDMYFPEFLEVFSDWEGKVALLTLKEM
PLPCDVVENEVEGIIEYWRDKVDRRAVSRRRAMDLVEAAKRSIGKKEGRKLARQEIKYLLSQYELLKKQIEEIEAEMAELLREVPNGEELLKIKGVGVKT
AVGFISEVGDIKRYEDARQIQKLAGLNIVENSSGKYKGQTCISKRGRGRLRSSLFKAMITIVAKNEEFKQLHRYYTTRENNPLKKKQSLIALCCKLIRVF
YAILKKGVKYDGNKMLSDIKREALARTA
Blast result :
Comments
ISCsa4 is 69% aa similar to IS653.
References
1] ISfinder annotation (2011)
2] Miriam land (2011).
2] Miriam land (2011).