ISCsa1
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009437 | ND | Caldicellulosiruptor saccharolyticus | Caldicellulosiruptor bescii DSM 6725 Caldicellulosiruptor lactoaceticus 6A Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor kristjanssonii 177R1B |
DNA section
IS Length : 1852 bp
Ends
IR Length : 20/23
IRL : GGTTCTTTCCGAAGTCAGTTGAATAAATTTTATTTTTCGTCTATAATGAA
IRR : GGTTCTTTCCTAACTTAGTTGAAATTAAATAATAAGACCTTACTTCTTAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGAAATACT | GATTTTATTT | 0 |
DNA sequence
GGTTCTTTCCGAAGTCAGTTGAATAAATTTTATTTTTCGTCTATAATGAAAGAACTATTAGATCAAAGGAGAAATCAATACAATGGAGTCAATAATAAAC
CTAAAAGAATAATAATCTTGTCATGGAGAAATACGAAATAATTGATGATACAATTTACATCTATGTTAAATCTAAAAATTCCCAAGCTACGTGTCCTTAT
TGCAATCAAAGTTCTAATAAAATACATTCTTACTATTCGAGAAGTTTTCAAGATCTTCCAATACAAGATAAAAAAGTTGTTATAGTTCTTAAGAATAGAA
AATTATTTTGTAAAAATCCTGAGTGCAGAAAAAAAACATTTGCTGAAAGATTTCAATTTATCTCTGATAACGCAAAAAGAACTAAAAGACTTGAAGATGA
AATATTAAACATTTCAATGAATATAAGTTCTGTAGCTGCGTCAAAGATATTAAGGAGAAACATTGCAAACAAACTCAAGAGCACAATTTGTGAAATGATA
AAAAAAGCAGTTCTAATTGATAGAGATACAGTTAAAAGAATATGTATTGACGATTTTGCCCTAAAGCGCAGGGAGAAATATGCAACAGTAATGATAGATA
TTGAAAGCGGGAAGGTTATTGATATTTTAAATTCCAGAGACTACGACGATGTAAAACAATGGTTAGAAGAATATCCAAATATAGAGGTTGTATGTAGAGA
TGGTTCTGTAGCTTATTCTAAAGCAATAAAAGATTCACATTGTGAAGCAATTCAAATAAGTGATAGATTTCATTTATTAAAAAATTTAACCGATTATTGC
AGAGAATATATAAAAGGAGAGATTAAAAATAAGATAAAAATAGAAATGCCAATGGTAAGAGAGGCAGAAACAAAATATTCAACTGAGACAAAGAAATACC
ATTATAAGACAAAATGGGAATTAATACTTGCTGTGAAAGAGATGATTTCGGATGGCTGTACAATAAATGAAGTATGTAGAGTTTTAGGACTTGGGAATAA
AACTGTTATAAAGTATTCAAAAATAAATGAGAGCGATAAAGAAAAATATGACAGGGAGCCGATTGGGAAATCGAAGCAGGAAGATATTTGTAAACGAAAG
GAAGAATTAATTGAACAGGCCAAATTGCTTAGAAGGAAAGGATATAGCATTACTGGGATATCGAGAGAATTAGGTTTAGATCGAAAAACAGTAAAAAAAT
ATCTTGAATCAGATGGTAGATTTAATCATGCATCGAAAGGAAGAAAATTTAAAAGTAAGTTAGACAATTATAAAGAATGCATTTTAGAACTTTTTTCAAA
GGGATATAGTGGTGCAAGGATATTTGAAGAGATAAAGCAAATGGGATACGATGGTTCATATTCGTTAGTAAGGAACTTTATTGCTAATATAAATAAAGAA
AGGATATTTTTAGAAGATAGAAATGAGGCAATTAAGACAGTCGAGAGAAAGAGCCTGATAAGTTTGCTTTATAGAGGGATAGAAGAACAAAAAGCTATAA
CAGCGGAGGAATTGGAAAAAGTAATGGAGATTTATCCTCAATTAAAGGTAGTCTACCGATTAGTCAAGCAGTTTAAAGAAATCCTGTTGAATAAAGAAGT
ATTTAAGGTAGAGCAGTGGCTTAAAGAGAGTGAAGAGTTAGATATTCCCGAGTTGAATAGTTTTGTATCGGGGGTAAAGAGAGATTATGAAGCTGTAAGA
AATTGTATTATGTATGAATACAGTAACGGCTTAGCAGAGGGGGTTATAAATAAGATAAAAATTATTAAGAGAATTATGTATGGTCGCTGTAGTTTTGAAA
TGTTAAGAAGTAAGGTCTTATTATTTAATTTCAACTAAGTTAGGAAAGAACC
CTAAAAGAATAATAATCTTGTCATGGAGAAATACGAAATAATTGATGATACAATTTACATCTATGTTAAATCTAAAAATTCCCAAGCTACGTGTCCTTAT
TGCAATCAAAGTTCTAATAAAATACATTCTTACTATTCGAGAAGTTTTCAAGATCTTCCAATACAAGATAAAAAAGTTGTTATAGTTCTTAAGAATAGAA
AATTATTTTGTAAAAATCCTGAGTGCAGAAAAAAAACATTTGCTGAAAGATTTCAATTTATCTCTGATAACGCAAAAAGAACTAAAAGACTTGAAGATGA
AATATTAAACATTTCAATGAATATAAGTTCTGTAGCTGCGTCAAAGATATTAAGGAGAAACATTGCAAACAAACTCAAGAGCACAATTTGTGAAATGATA
AAAAAAGCAGTTCTAATTGATAGAGATACAGTTAAAAGAATATGTATTGACGATTTTGCCCTAAAGCGCAGGGAGAAATATGCAACAGTAATGATAGATA
TTGAAAGCGGGAAGGTTATTGATATTTTAAATTCCAGAGACTACGACGATGTAAAACAATGGTTAGAAGAATATCCAAATATAGAGGTTGTATGTAGAGA
TGGTTCTGTAGCTTATTCTAAAGCAATAAAAGATTCACATTGTGAAGCAATTCAAATAAGTGATAGATTTCATTTATTAAAAAATTTAACCGATTATTGC
AGAGAATATATAAAAGGAGAGATTAAAAATAAGATAAAAATAGAAATGCCAATGGTAAGAGAGGCAGAAACAAAATATTCAACTGAGACAAAGAAATACC
ATTATAAGACAAAATGGGAATTAATACTTGCTGTGAAAGAGATGATTTCGGATGGCTGTACAATAAATGAAGTATGTAGAGTTTTAGGACTTGGGAATAA
AACTGTTATAAAGTATTCAAAAATAAATGAGAGCGATAAAGAAAAATATGACAGGGAGCCGATTGGGAAATCGAAGCAGGAAGATATTTGTAAACGAAAG
GAAGAATTAATTGAACAGGCCAAATTGCTTAGAAGGAAAGGATATAGCATTACTGGGATATCGAGAGAATTAGGTTTAGATCGAAAAACAGTAAAAAAAT
ATCTTGAATCAGATGGTAGATTTAATCATGCATCGAAAGGAAGAAAATTTAAAAGTAAGTTAGACAATTATAAAGAATGCATTTTAGAACTTTTTTCAAA
GGGATATAGTGGTGCAAGGATATTTGAAGAGATAAAGCAAATGGGATACGATGGTTCATATTCGTTAGTAAGGAACTTTATTGCTAATATAAATAAAGAA
AGGATATTTTTAGAAGATAGAAATGAGGCAATTAAGACAGTCGAGAGAAAGAGCCTGATAAGTTTGCTTTATAGAGGGATAGAAGAACAAAAAGCTATAA
CAGCGGAGGAATTGGAAAAAGTAATGGAGATTTATCCTCAATTAAAGGTAGTCTACCGATTAGTCAAGCAGTTTAAAGAAATCCTGTTGAATAAAGAAGT
ATTTAAGGTAGAGCAGTGGCTTAAAGAGAGTGAAGAGTTAGATATTCCCGAGTTGAATAGTTTTGTATCGGGGGTAAAGAGAGATTATGAAGCTGTAAGA
AATTGTATTATGTATGAATACAGTAACGGCTTAGCAGAGGGGGTTATAAATAAGATAAAAATTATTAAGAGAATTATGTATGGTCGCTGTAGTTTTGAAA
TGTTAAGAAGTAAGGTCTTATTATTTAATTTCAACTAAGTTAGGAAAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1716 bp | 571 aa | 123 | 1838 | + | No |
Chemistry : Unknow
ORF sequence :
MEKYEIIDDTIYIYVKSKNSQATCPYCNQSSNKIHSYYSRSFQDLPIQDKKVVIVLKNRKLFCKNPECRKKTFAERFQFISDNAKRTKRLEDEILNISMN
ISSVAASKILRRNIANKLKSTICEMIKKAVLIDRDTVKRICIDDFALKRREKYATVMIDIESGKVIDILNSRDYDDVKQWLEEYPNIEVVCRDGSVAYSK
AIKDSHCEAIQISDRFHLLKNLTDYCREYIKGEIKNKIKIEMPMVREAETKYSTETKKYHYKTKWELILAVKEMISDGCTINEVCRVLGLGNKTVIKYSK
INESDKEKYDREPIGKSKQEDICKRKEELIEQAKLLRRKGYSITGISRELGLDRKTVKKYLESDGRFNHASKGRKFKSKLDNYKECILELFSKGYSGARI
FEEIKQMGYDGSYSLVRNFIANINKERIFLEDRNEAIKTVERKSLISLLYRGIEEQKAITAEELEKVMEIYPQLKVVYRLVKQFKEILLNKEVFKVEQWL
KESEELDIPELNSFVSGVKRDYEAVRNCIMYEYSNGLAEGVINKIKIIKRIMYGRCSFEMLRSKVLLFNFN
ISSVAASKILRRNIANKLKSTICEMIKKAVLIDRDTVKRICIDDFALKRREKYATVMIDIESGKVIDILNSRDYDDVKQWLEEYPNIEVVCRDGSVAYSK
AIKDSHCEAIQISDRFHLLKNLTDYCREYIKGEIKNKIKIEMPMVREAETKYSTETKKYHYKTKWELILAVKEMISDGCTINEVCRVLGLGNKTVIKYSK
INESDKEKYDREPIGKSKQEDICKRKEELIEQAKLLRRKGYSITGISRELGLDRKTVKKYLESDGRFNHASKGRKFKSKLDNYKECILELFSKGYSGARI
FEEIKQMGYDGSYSLVRNFIANINKERIFLEDRNEAIKTVERKSLISLLYRGIEEQKAITAEELEKVMEIYPQLKVVYRLVKQFKEILLNKEVFKVEQWL
KESEELDIPELNSFVSGVKRDYEAVRNCIMYEYSNGLAEGVINKIKIIKRIMYGRCSFEMLRSKVLLFNFN
Blast result :
Comments
ISCsa1 is 48% aa similar to ISAcma23.
References
1] ISfinder annotation (2011).
2] Miriam Land (2011).
2] Miriam Land (2011).