ISCsa1

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009437 ND Caldicellulosiruptor saccharolyticus
Caldicellulosiruptor bescii DSM 6725
Caldicellulosiruptor lactoaceticus 6A
Caldicellulosiruptor saccharolyticus DSM 8903
Caldicellulosiruptor kristjanssonii 177R1B
DNA section
IS Length : 1852 bp

Ends


IR Length : 20/23

IRL : GGTTCTTTCCGAAGTCAGTTGAATAAATTTTATTTTTCGTCTATAATGAA
IRR : GGTTCTTTCCTAACTTAGTTGAAATTAAATAATAAGACCTTACTTCTTAA

Insertion site


Left flankDirect repeatRight flankDR Length
TAGAAATACTGATTTTATTT0

DNA sequence

GGTTCTTTCCGAAGTCAGTTGAATAAATTTTATTTTTCGTCTATAATGAAAGAACTATTAGATCAAAGGAGAAATCAATACAATGGAGTCAATAATAAAC
CTAAAAGAATAATAATCTTGTCATGGAGAAATACGAAATAATTGATGATACAATTTACATCTATGTTAAATCTAAAAATTCCCAAGCTACGTGTCCTTAT
TGCAATCAAAGTTCTAATAAAATACATTCTTACTATTCGAGAAGTTTTCAAGATCTTCCAATACAAGATAAAAAAGTTGTTATAGTTCTTAAGAATAGAA
AATTATTTTGTAAAAATCCTGAGTGCAGAAAAAAAACATTTGCTGAAAGATTTCAATTTATCTCTGATAACGCAAAAAGAACTAAAAGACTTGAAGATGA
AATATTAAACATTTCAATGAATATAAGTTCTGTAGCTGCGTCAAAGATATTAAGGAGAAACATTGCAAACAAACTCAAGAGCACAATTTGTGAAATGATA
AAAAAAGCAGTTCTAATTGATAGAGATACAGTTAAAAGAATATGTATTGACGATTTTGCCCTAAAGCGCAGGGAGAAATATGCAACAGTAATGATAGATA
TTGAAAGCGGGAAGGTTATTGATATTTTAAATTCCAGAGACTACGACGATGTAAAACAATGGTTAGAAGAATATCCAAATATAGAGGTTGTATGTAGAGA
TGGTTCTGTAGCTTATTCTAAAGCAATAAAAGATTCACATTGTGAAGCAATTCAAATAAGTGATAGATTTCATTTATTAAAAAATTTAACCGATTATTGC
AGAGAATATATAAAAGGAGAGATTAAAAATAAGATAAAAATAGAAATGCCAATGGTAAGAGAGGCAGAAACAAAATATTCAACTGAGACAAAGAAATACC
ATTATAAGACAAAATGGGAATTAATACTTGCTGTGAAAGAGATGATTTCGGATGGCTGTACAATAAATGAAGTATGTAGAGTTTTAGGACTTGGGAATAA
AACTGTTATAAAGTATTCAAAAATAAATGAGAGCGATAAAGAAAAATATGACAGGGAGCCGATTGGGAAATCGAAGCAGGAAGATATTTGTAAACGAAAG
GAAGAATTAATTGAACAGGCCAAATTGCTTAGAAGGAAAGGATATAGCATTACTGGGATATCGAGAGAATTAGGTTTAGATCGAAAAACAGTAAAAAAAT
ATCTTGAATCAGATGGTAGATTTAATCATGCATCGAAAGGAAGAAAATTTAAAAGTAAGTTAGACAATTATAAAGAATGCATTTTAGAACTTTTTTCAAA
GGGATATAGTGGTGCAAGGATATTTGAAGAGATAAAGCAAATGGGATACGATGGTTCATATTCGTTAGTAAGGAACTTTATTGCTAATATAAATAAAGAA
AGGATATTTTTAGAAGATAGAAATGAGGCAATTAAGACAGTCGAGAGAAAGAGCCTGATAAGTTTGCTTTATAGAGGGATAGAAGAACAAAAAGCTATAA
CAGCGGAGGAATTGGAAAAAGTAATGGAGATTTATCCTCAATTAAAGGTAGTCTACCGATTAGTCAAGCAGTTTAAAGAAATCCTGTTGAATAAAGAAGT
ATTTAAGGTAGAGCAGTGGCTTAAAGAGAGTGAAGAGTTAGATATTCCCGAGTTGAATAGTTTTGTATCGGGGGTAAAGAGAGATTATGAAGCTGTAAGA
AATTGTATTATGTATGAATACAGTAACGGCTTAGCAGAGGGGGTTATAAATAAGATAAAAATTATTAAGAGAATTATGTATGGTCGCTGTAGTTTTGAAA
TGTTAAGAAGTAAGGTCTTATTATTTAATTTCAACTAAGTTAGGAAAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1716 bp571 aa1231838+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MEKYEIIDDTIYIYVKSKNSQATCPYCNQSSNKIHSYYSRSFQDLPIQDKKVVIVLKNRKLFCKNPECRKKTFAERFQFISDNAKRTKRLEDEILNISMN
ISSVAASKILRRNIANKLKSTICEMIKKAVLIDRDTVKRICIDDFALKRREKYATVMIDIESGKVIDILNSRDYDDVKQWLEEYPNIEVVCRDGSVAYSK
AIKDSHCEAIQISDRFHLLKNLTDYCREYIKGEIKNKIKIEMPMVREAETKYSTETKKYHYKTKWELILAVKEMISDGCTINEVCRVLGLGNKTVIKYSK
INESDKEKYDREPIGKSKQEDICKRKEELIEQAKLLRRKGYSITGISRELGLDRKTVKKYLESDGRFNHASKGRKFKSKLDNYKECILELFSKGYSGARI
FEEIKQMGYDGSYSLVRNFIANINKERIFLEDRNEAIKTVERKSLISLLYRGIEEQKAITAEELEKVMEIYPQLKVVYRLVKQFKEILLNKEVFKVEQWL
KESEELDIPELNSFVSGVKRDYEAVRNCIMYEYSNGLAEGVINKIKIIKRIMYGRCSFEMLRSKVLLFNFN

 

Blast result :
Comments
ISCsa1 is 48% aa similar to ISAcma23.
References
1] ISfinder annotation (2011).
2] Miriam Land (2011).