ISBsu2

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) IS256Bsu1
Accession numberTranspositionOriginHost
AB275894 ND Bacillus subtilis
Bacillus subtilis plasmid p1516L
Bacillus subtilis subsp. natto
DNA section
IS Length : 1369 bp

Ends


IR Length : 19/28

IRL : GGGAGTGTAATATTAACTGTGTAAGTAAGGAATGCGTACGGTTCCTTACT
IRR : GGGCTTGTCAAGAAAAGTGTGTAAGTTATTCTAGATATTTCTTCACACGT

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGGAGTGTAATATTAACTGTGTAAGTAAGGAATGCGTACGGTTCCTTACTCACACAGTTTTTTATTTGATAGAATAATAAGTATAAAGCTAAAGGAGTGG
TTTCAGTGGGGAAATTGAAAAGAGATCCGAACTCCGTAGAATTAGCTAACAAGATTATCGAACAGTATCAGCCTAAATCAGTAGAAGATATGCAAGAAGC
ATTAAAAGACATATTTGGTCCCATGTTTGAGTCAATGCTAAAAGGTGAAATGAATCACCATTTGGGCTATGAATCCAATGACAAGGGAGAAAAAGAAACA
AGAAATAGAAGAAATGGATATGGCAAAAAGATCGTGAAAACAACGGCAGGAGAAGTTGAAATTGCAGTCCCCCGTGATCGTGATGGTTCATTTGAACCGC
AGTTGATTCCAAAGCGTAAAAGAGATGTATCCTCTATAGAGGATAAGGTCATTTCGATGTATGCCAGAGGAATGTCACAACGAGACATTTCTTCCACGAT
AGAAGACATCTATGGCTTTTCTGTATCTCATGAAATGGTATCCGACATTACGGATACTGTACTTCCTAATTTAGAAGAGTGGCAAAATCGTCCCTTAAGT
AACTGTTACCCTTTTGTGTTTGTCGATTGTCTTTACACAACCATTCGTAATGACTATGAAACGAAGAAGTATGCCGTTTACACAATACTAGGATATACCA
TAGAAGGTAAAAAGGACATTCTAGGTTTGTGGTTGAATGAAACGGAAAGTAAACATAAATGGATGCAAATTTTTGATGAAATCAAATCTCGTGGTGTAGA
AGATATCTTCTTTCTCTCAATGGATGGCGTTAGTGGTCTGGAAGAAGGAGCACGTGCGATTTTTCCTGATGTGACCGTACAGAGATGTATTGTTCATTTA
ATTCGAAATTCGATTAAGTATATACCAAGTAAAGACTACAAGCCTTTTACTGCTGCCTTAAAGAAAGTGTATGGAGCTCCAAGCCTTAAGGCTTGTCACA
GTGCATTTGAATCTTTTGAAAAGCAGTGGTCTACGTACCCTGGAGCTGTAGACGTATGGAAACGAAACTTTTCTCATGTGGAACAACTTTTCGATTATGG
TGGTAATATTCGTAAAATCATGTACACTACAAATGCCGTTGAAAGTATCCACTCTAGCTTTCGAAAAGTCACGAAAAAAGGAGCATTCCCCCATGAGAAT
GCCCTATTAAAAATATTGTTTTTACGAACAAAAGAATTAGAAAAGAAATGGGATGGTGGACGCATCCAGCAATGGGCTATGGTCATGAATCAACTATTAG
TTCATGACCACCTAAAGGAACGTGTGAAGAAATATCTAGAATAACTTACACACTTTTCTTGACAAGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1248 bp415 aa971344+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVSVGKLKRDPNSVELANKIIEQYQPKSVEDMQEALKDIFGPMFESMLKGEMNHHLGYESNDKGEKETRNRRNGYGKKIVKTTAGEVEIAVPRDRDGSFE
PQLIPKRKRDVSSIEDKVISMYARGMSQRDISSTIEDIYGFSVSHEMVSDITDTVLPNLEEWQNRPLSNCYPFVFVDCLYTTIRNDYETKKYAVYTILGY
TIEGKKDILGLWLNETESKHKWMQIFDEIKSRGVEDIFFLSMDGVSGLEEGARAIFPDVTVQRCIVHLIRNSIKYIPSKDYKPFTAALKKVYGAPSLKAC
HSAFESFEKQWSTYPGAVDVWKRNFSHVEQLFDYGGNIRKIMYTTNAVESIHSSFRKVTKKGAFPHENALLKILFLRTKELEKKWDGGRIQQWAMVMNQL
LVHDHLKERVKKYLE

 

Blast result :
Comments
ISBsu2 is 66% aa similar to ISCth4.
References
1] ISfinder (2011)
2] Kimura,K. and Itoh,Y. (2007) Biosci Biotechnol Biochem.71(10):2458-64.
3] Poluektova,E.U., Holsappel,S., Gagarina,E.Iu., Bron,S. and Prozorov,A.A. (2002) Genetika 38 (12), 1719-1722.