ISBsu2
- Family IS256
- Group
Isoform Synonym(s) IS256Bsu1
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB275894 | ND | Bacillus subtilis | Bacillus subtilis plasmid p1516L Bacillus subtilis subsp. natto |
DNA section
IS Length : 1369 bp
Ends
IR Length : 19/28
IRL : GGGAGTGTAATATTAACTGTGTAAGTAAGGAATGCGTACGGTTCCTTACT
IRR : GGGCTTGTCAAGAAAAGTGTGTAAGTTATTCTAGATATTTCTTCACACGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGGAGTGTAATATTAACTGTGTAAGTAAGGAATGCGTACGGTTCCTTACTCACACAGTTTTTTATTTGATAGAATAATAAGTATAAAGCTAAAGGAGTGG
TTTCAGTGGGGAAATTGAAAAGAGATCCGAACTCCGTAGAATTAGCTAACAAGATTATCGAACAGTATCAGCCTAAATCAGTAGAAGATATGCAAGAAGC
ATTAAAAGACATATTTGGTCCCATGTTTGAGTCAATGCTAAAAGGTGAAATGAATCACCATTTGGGCTATGAATCCAATGACAAGGGAGAAAAAGAAACA
AGAAATAGAAGAAATGGATATGGCAAAAAGATCGTGAAAACAACGGCAGGAGAAGTTGAAATTGCAGTCCCCCGTGATCGTGATGGTTCATTTGAACCGC
AGTTGATTCCAAAGCGTAAAAGAGATGTATCCTCTATAGAGGATAAGGTCATTTCGATGTATGCCAGAGGAATGTCACAACGAGACATTTCTTCCACGAT
AGAAGACATCTATGGCTTTTCTGTATCTCATGAAATGGTATCCGACATTACGGATACTGTACTTCCTAATTTAGAAGAGTGGCAAAATCGTCCCTTAAGT
AACTGTTACCCTTTTGTGTTTGTCGATTGTCTTTACACAACCATTCGTAATGACTATGAAACGAAGAAGTATGCCGTTTACACAATACTAGGATATACCA
TAGAAGGTAAAAAGGACATTCTAGGTTTGTGGTTGAATGAAACGGAAAGTAAACATAAATGGATGCAAATTTTTGATGAAATCAAATCTCGTGGTGTAGA
AGATATCTTCTTTCTCTCAATGGATGGCGTTAGTGGTCTGGAAGAAGGAGCACGTGCGATTTTTCCTGATGTGACCGTACAGAGATGTATTGTTCATTTA
ATTCGAAATTCGATTAAGTATATACCAAGTAAAGACTACAAGCCTTTTACTGCTGCCTTAAAGAAAGTGTATGGAGCTCCAAGCCTTAAGGCTTGTCACA
GTGCATTTGAATCTTTTGAAAAGCAGTGGTCTACGTACCCTGGAGCTGTAGACGTATGGAAACGAAACTTTTCTCATGTGGAACAACTTTTCGATTATGG
TGGTAATATTCGTAAAATCATGTACACTACAAATGCCGTTGAAAGTATCCACTCTAGCTTTCGAAAAGTCACGAAAAAAGGAGCATTCCCCCATGAGAAT
GCCCTATTAAAAATATTGTTTTTACGAACAAAAGAATTAGAAAAGAAATGGGATGGTGGACGCATCCAGCAATGGGCTATGGTCATGAATCAACTATTAG
TTCATGACCACCTAAAGGAACGTGTGAAGAAATATCTAGAATAACTTACACACTTTTCTTGACAAGCCC
TTTCAGTGGGGAAATTGAAAAGAGATCCGAACTCCGTAGAATTAGCTAACAAGATTATCGAACAGTATCAGCCTAAATCAGTAGAAGATATGCAAGAAGC
ATTAAAAGACATATTTGGTCCCATGTTTGAGTCAATGCTAAAAGGTGAAATGAATCACCATTTGGGCTATGAATCCAATGACAAGGGAGAAAAAGAAACA
AGAAATAGAAGAAATGGATATGGCAAAAAGATCGTGAAAACAACGGCAGGAGAAGTTGAAATTGCAGTCCCCCGTGATCGTGATGGTTCATTTGAACCGC
AGTTGATTCCAAAGCGTAAAAGAGATGTATCCTCTATAGAGGATAAGGTCATTTCGATGTATGCCAGAGGAATGTCACAACGAGACATTTCTTCCACGAT
AGAAGACATCTATGGCTTTTCTGTATCTCATGAAATGGTATCCGACATTACGGATACTGTACTTCCTAATTTAGAAGAGTGGCAAAATCGTCCCTTAAGT
AACTGTTACCCTTTTGTGTTTGTCGATTGTCTTTACACAACCATTCGTAATGACTATGAAACGAAGAAGTATGCCGTTTACACAATACTAGGATATACCA
TAGAAGGTAAAAAGGACATTCTAGGTTTGTGGTTGAATGAAACGGAAAGTAAACATAAATGGATGCAAATTTTTGATGAAATCAAATCTCGTGGTGTAGA
AGATATCTTCTTTCTCTCAATGGATGGCGTTAGTGGTCTGGAAGAAGGAGCACGTGCGATTTTTCCTGATGTGACCGTACAGAGATGTATTGTTCATTTA
ATTCGAAATTCGATTAAGTATATACCAAGTAAAGACTACAAGCCTTTTACTGCTGCCTTAAAGAAAGTGTATGGAGCTCCAAGCCTTAAGGCTTGTCACA
GTGCATTTGAATCTTTTGAAAAGCAGTGGTCTACGTACCCTGGAGCTGTAGACGTATGGAAACGAAACTTTTCTCATGTGGAACAACTTTTCGATTATGG
TGGTAATATTCGTAAAATCATGTACACTACAAATGCCGTTGAAAGTATCCACTCTAGCTTTCGAAAAGTCACGAAAAAAGGAGCATTCCCCCATGAGAAT
GCCCTATTAAAAATATTGTTTTTACGAACAAAAGAATTAGAAAAGAAATGGGATGGTGGACGCATCCAGCAATGGGCTATGGTCATGAATCAACTATTAG
TTCATGACCACCTAAAGGAACGTGTGAAGAAATATCTAGAATAACTTACACACTTTTCTTGACAAGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 97 | 1344 | + | No |
Chemistry : DDE
ORF sequence :
MVSVGKLKRDPNSVELANKIIEQYQPKSVEDMQEALKDIFGPMFESMLKGEMNHHLGYESNDKGEKETRNRRNGYGKKIVKTTAGEVEIAVPRDRDGSFE
PQLIPKRKRDVSSIEDKVISMYARGMSQRDISSTIEDIYGFSVSHEMVSDITDTVLPNLEEWQNRPLSNCYPFVFVDCLYTTIRNDYETKKYAVYTILGY
TIEGKKDILGLWLNETESKHKWMQIFDEIKSRGVEDIFFLSMDGVSGLEEGARAIFPDVTVQRCIVHLIRNSIKYIPSKDYKPFTAALKKVYGAPSLKAC
HSAFESFEKQWSTYPGAVDVWKRNFSHVEQLFDYGGNIRKIMYTTNAVESIHSSFRKVTKKGAFPHENALLKILFLRTKELEKKWDGGRIQQWAMVMNQL
LVHDHLKERVKKYLE
PQLIPKRKRDVSSIEDKVISMYARGMSQRDISSTIEDIYGFSVSHEMVSDITDTVLPNLEEWQNRPLSNCYPFVFVDCLYTTIRNDYETKKYAVYTILGY
TIEGKKDILGLWLNETESKHKWMQIFDEIKSRGVEDIFFLSMDGVSGLEEGARAIFPDVTVQRCIVHLIRNSIKYIPSKDYKPFTAALKKVYGAPSLKAC
HSAFESFEKQWSTYPGAVDVWKRNFSHVEQLFDYGGNIRKIMYTTNAVESIHSSFRKVTKKGAFPHENALLKILFLRTKELEKKWDGGRIQQWAMVMNQL
LVHDHLKERVKKYLE
Blast result :
Comments
ISBsu2 is 66% aa similar to ISCth4.
References
1] ISfinder (2011)
2] Kimura,K. and Itoh,Y. (2007) Biosci Biotechnol Biochem.71(10):2458-64.
3] Poluektova,E.U., Holsappel,S., Gagarina,E.Iu., Bron,S. and Prozorov,A.A. (2002) Genetika 38 (12), 1719-1722.
2] Kimura,K. and Itoh,Y. (2007) Biosci Biotechnol Biochem.71(10):2458-64.
3] Poluektova,E.U., Holsappel,S., Gagarina,E.Iu., Bron,S. and Prozorov,A.A. (2002) Genetika 38 (12), 1719-1722.