ISPa41
- Family IS5
- Group IS5
Isoform Synonym(s) ISPsy10
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas putida Pseudomonas syringae DC3000 Pseudomonas aeruginosa DK2 |
DNA section
IS Length : 1168 bp
Ends
IR Length : 12/15
IRL : GGAATCTCCGAACAAGCCTTCAGTTATGCGAGAATCCCCGCAACACCTGA
IRR : GGATGCTCCGATCAACTTGTCGTGCAGCCGCGGCAAGTTGCAATTTTCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCCATTGCG | CTAA | GCGCGCCTTC | 4 |
GGTGCTGCCA | CTAA | AAACGTCGGG | 4 |
DNA sequence
GGAATCTCCGAACAAGCCTTCAGTTATGCGAGAATCCCCGCAACACCTGATCCGAGCCGCCCATGAGCCAGATGAGCTTTTCCGACTTTGAGTACGCCGG
CAAGCGCAAGCAAACCCGCCGAGAGCGCTTCCTCGCCGAAATGGATCAGGTGGTGCCCTGGGCAGGCCTGCTGGAGCTGATCGAACCGTTCTACCCCAAG
GCCGGCGGCGGTAGAAAACCCTATCCTCTGGAAACCATGCTGCGCATCCATCTGTTGCAGAACTGGTTCTCCCTGAGCGACCCGGCCATGGAGGAAGCGC
TCTACGAAATCACGCCCATGCGCCAGTTCGCACGCCTGACGCTGAGCGCGCCAATCCCCGAAGACACCACGATCATGAACTTCCGGCACTTGCTGGAGAA
GCATCAGCTCGCACCGGCAATCCTTGCGGTCATCAATGGTTATCTGCAGGAAAAAGGCCTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACCATTATT
CATGCCCCCAGCTCGACCAAAAATAAAGAAGGCAAGCGTGATCCCGAGATGCACCAGACCAAGAAAGGCGGTCAGTATTTCTTCGGGATGAAGGCGCACA
TCGGTGCCGATGTCGAGTCCGGCCTGGTGCATCACGTCCATGGCACCGCTGCCAATGTGGCCGATGTCACGCAGGTGGCTGAACTGCTGCATGGCGAAGA
AAACGCCGTGTATGCAGATGCCGGTTACACCGGTGTCGAAAGGCGCGAAGAGCATGAAAATCGGGGGGTGATCTGGCAGATTGCAGCGCGTCGCAGCACC
TATTCCAAGCTGAACCAGCGCAGCGTACTGTACAAAGCCAAGCGCAAGATCGAGTTCTGCAAGGCTCAGACACGGGCCAAGGTCGAGCATCCGTTTCGCG
TGATCAAGCGGCAGTTTGGTTACGTGAAAATACGTTTTCGTGGGCTGATGAAAAACACGGCTCAGTTGACCACGCTGTTCGCCCTGGCAAACCTGTGGAG
GGTTCGAAAACAGCTCATGGGTATGGGTGAGGTTCGCGTTTAACACGGAGAACCGGTCGAAAAAGCTCTCCGTACATGATTTTTCGGTCACTTTTCGTCC
AATGACGCTGTAGGTGCCTGGAAAATTGCAACTTGCCGCGGCTGCACGACAAGTTGATCGGAGCATCC
CAAGCGCAAGCAAACCCGCCGAGAGCGCTTCCTCGCCGAAATGGATCAGGTGGTGCCCTGGGCAGGCCTGCTGGAGCTGATCGAACCGTTCTACCCCAAG
GCCGGCGGCGGTAGAAAACCCTATCCTCTGGAAACCATGCTGCGCATCCATCTGTTGCAGAACTGGTTCTCCCTGAGCGACCCGGCCATGGAGGAAGCGC
TCTACGAAATCACGCCCATGCGCCAGTTCGCACGCCTGACGCTGAGCGCGCCAATCCCCGAAGACACCACGATCATGAACTTCCGGCACTTGCTGGAGAA
GCATCAGCTCGCACCGGCAATCCTTGCGGTCATCAATGGTTATCTGCAGGAAAAAGGCCTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACCATTATT
CATGCCCCCAGCTCGACCAAAAATAAAGAAGGCAAGCGTGATCCCGAGATGCACCAGACCAAGAAAGGCGGTCAGTATTTCTTCGGGATGAAGGCGCACA
TCGGTGCCGATGTCGAGTCCGGCCTGGTGCATCACGTCCATGGCACCGCTGCCAATGTGGCCGATGTCACGCAGGTGGCTGAACTGCTGCATGGCGAAGA
AAACGCCGTGTATGCAGATGCCGGTTACACCGGTGTCGAAAGGCGCGAAGAGCATGAAAATCGGGGGGTGATCTGGCAGATTGCAGCGCGTCGCAGCACC
TATTCCAAGCTGAACCAGCGCAGCGTACTGTACAAAGCCAAGCGCAAGATCGAGTTCTGCAAGGCTCAGACACGGGCCAAGGTCGAGCATCCGTTTCGCG
TGATCAAGCGGCAGTTTGGTTACGTGAAAATACGTTTTCGTGGGCTGATGAAAAACACGGCTCAGTTGACCACGCTGTTCGCCCTGGCAAACCTGTGGAG
GGTTCGAAAACAGCTCATGGGTATGGGTGAGGTTCGCGTTTAACACGGAGAACCGGTCGAAAAAGCTCTCCGTACATGATTTTTCGGTCACTTTTCGTCC
AATGACGCTGTAGGTGCCTGGAAAATTGCAACTTGCCGCGGCTGCACGACAAGTTGATCGGAGCATCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 63 | 1043 | + | No |
Chemistry : DDE
ORF sequence :
MSQMSFSDFEYAGKRKQTRRERFLAEMDQVVPWAGLLELIEPFYPKAGGGRKPYPLETMLRIHLLQNWFSLSDPAMEEALYEITPMRQFARLTLSAPIPE
DTTIMNFRHLLEKHQLAPAILAVINGYLQEKGLSLRQGTIVDATIIHAPSSTKNKEGKRDPEMHQTKKGGQYFFGMKAHIGADVESGLVHHVHGTAANVA
DVTQVAELLHGEENAVYADAGYTGVERREEHENRGVIWQIAARRSTYSKLNQRSVLYKAKRKIEFCKAQTRAKVEHPFRVIKRQFGYVKIRFRGLMKNTA
QLTTLFALANLWRVRKQLMGMGEVRV
DTTIMNFRHLLEKHQLAPAILAVINGYLQEKGLSLRQGTIVDATIIHAPSSTKNKEGKRDPEMHQTKKGGQYFFGMKAHIGADVESGLVHHVHGTAANVA
DVTQVAELLHGEENAVYADAGYTGVERREEHENRGVIWQIAARRSTYSKLNQRSVLYKAKRKIEFCKAQTRAKVEHPFRVIKRQFGYVKIRFRGLMKNTA
QLTTLFALANLWRVRKQLMGMGEVRV
Blast result :
Comments
ISPa41 is 92% aa similar to IS2000.
ISPsy10 was identified in Pseudomonas syringae DC3000, and the peptide sequence was stitched together from 3 degenerate copies of ISPsy10 in the chromosome of this strain.
ISPsy10 was identified in Pseudomonas syringae DC3000, and the peptide sequence was stitched together from 3 degenerate copies of ISPsy10 in the chromosome of this strain.
References
1] ISfinder annotation (2011).