ISPa41

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s) ISPsy10
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas putida
Pseudomonas syringae DC3000
Pseudomonas aeruginosa DK2
DNA section
IS Length : 1168 bp

Ends


IR Length : 12/15

IRL : GGAATCTCCGAACAAGCCTTCAGTTATGCGAGAATCCCCGCAACACCTGA
IRR : GGATGCTCCGATCAACTTGTCGTGCAGCCGCGGCAAGTTGCAATTTTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
AGCCATTGCGCTAAGCGCGCCTTC4
GGTGCTGCCACTAAAAACGTCGGG4

DNA sequence

GGAATCTCCGAACAAGCCTTCAGTTATGCGAGAATCCCCGCAACACCTGATCCGAGCCGCCCATGAGCCAGATGAGCTTTTCCGACTTTGAGTACGCCGG
CAAGCGCAAGCAAACCCGCCGAGAGCGCTTCCTCGCCGAAATGGATCAGGTGGTGCCCTGGGCAGGCCTGCTGGAGCTGATCGAACCGTTCTACCCCAAG
GCCGGCGGCGGTAGAAAACCCTATCCTCTGGAAACCATGCTGCGCATCCATCTGTTGCAGAACTGGTTCTCCCTGAGCGACCCGGCCATGGAGGAAGCGC
TCTACGAAATCACGCCCATGCGCCAGTTCGCACGCCTGACGCTGAGCGCGCCAATCCCCGAAGACACCACGATCATGAACTTCCGGCACTTGCTGGAGAA
GCATCAGCTCGCACCGGCAATCCTTGCGGTCATCAATGGTTATCTGCAGGAAAAAGGCCTGTCGCTGCGCCAAGGCACCATCGTCGATGCCACCATTATT
CATGCCCCCAGCTCGACCAAAAATAAAGAAGGCAAGCGTGATCCCGAGATGCACCAGACCAAGAAAGGCGGTCAGTATTTCTTCGGGATGAAGGCGCACA
TCGGTGCCGATGTCGAGTCCGGCCTGGTGCATCACGTCCATGGCACCGCTGCCAATGTGGCCGATGTCACGCAGGTGGCTGAACTGCTGCATGGCGAAGA
AAACGCCGTGTATGCAGATGCCGGTTACACCGGTGTCGAAAGGCGCGAAGAGCATGAAAATCGGGGGGTGATCTGGCAGATTGCAGCGCGTCGCAGCACC
TATTCCAAGCTGAACCAGCGCAGCGTACTGTACAAAGCCAAGCGCAAGATCGAGTTCTGCAAGGCTCAGACACGGGCCAAGGTCGAGCATCCGTTTCGCG
TGATCAAGCGGCAGTTTGGTTACGTGAAAATACGTTTTCGTGGGCTGATGAAAAACACGGCTCAGTTGACCACGCTGTTCGCCCTGGCAAACCTGTGGAG
GGTTCGAAAACAGCTCATGGGTATGGGTGAGGTTCGCGTTTAACACGGAGAACCGGTCGAAAAAGCTCTCCGTACATGATTTTTCGGTCACTTTTCGTCC
AATGACGCTGTAGGTGCCTGGAAAATTGCAACTTGCCGCGGCTGCACGACAAGTTGATCGGAGCATCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa631043+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQMSFSDFEYAGKRKQTRRERFLAEMDQVVPWAGLLELIEPFYPKAGGGRKPYPLETMLRIHLLQNWFSLSDPAMEEALYEITPMRQFARLTLSAPIPE
DTTIMNFRHLLEKHQLAPAILAVINGYLQEKGLSLRQGTIVDATIIHAPSSTKNKEGKRDPEMHQTKKGGQYFFGMKAHIGADVESGLVHHVHGTAANVA
DVTQVAELLHGEENAVYADAGYTGVERREEHENRGVIWQIAARRSTYSKLNQRSVLYKAKRKIEFCKAQTRAKVEHPFRVIKRQFGYVKIRFRGLMKNTA
QLTTLFALANLWRVRKQLMGMGEVRV

 

Blast result :
Comments
ISPa41 is 92% aa similar to IS2000.
ISPsy10 was identified in Pseudomonas syringae DC3000, and the peptide sequence was stitched together from 3 degenerate copies of ISPsy10 in the chromosome of this strain.
References
1] ISfinder annotation (2011).