ISPa40
- Family Tn3
- Group
Isoform Synonym(s) TnPa40
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa DK2 |
DNA section
IS Length : 6592 bp
Ends
IR Length : 35/38
IRL : TGGGTGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGCCGCGCCATGTG
IRR : GGGGAGCCCGCAGAACTCGGAAAAAATCGTACGCTAAGGTTTTCCGAGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCCTTGTT | AGGTAGCGAT | 0 |
DNA sequence
TGGGTGCCCGCAGAATTCGGAAAAAATCGTACGCTAAGCCGCGCCATGTGCTTGCGCGCGAGCGCTCTCAAGAGGATGGTCCCTCGTACTTCCGAAAAGC
GCGCCAAAGCACAACGTCATAGACGACCTTGAGTAGGCCGCAGGCCACCAGCGGCGCCGCCAGCCAGCCGGCGGCGAATAGGGCGCCGCCAATGGCGGGG
CTCGCTATGGCATTGAGGCGCTTTACCGCACCGCCGTAGTTGTTTTCCCAGTGGCTGACGATCAGCTTCTCGGACAGGCCGGTGAGTTTGGCCGGATCGC
ATGAAAGAGGTTTCAGTTCGTAAGGCATCTTGGCTTCCTCAGCAAGGTGGATCGGAAACGGCGCGACGAAGGCTGACTCGATCAGGTTCAGCCTTGGTTC
GGAAATACCAGCCACCCCGCCAATCCCGCCGCGAGGATCACGACGACGACGTTGAGCTTGTTCTTCCAGGCATAAAGGAATGCCAAGCCTGCGGCGAAAA
TCGACATGCCCACCGTCAACGATGGGACACGTTCAGCAGTGACCTGCGCCAAGTCGATGGTGGTTGCGCCGATCAGGCCGACTACCCCAGCCGCGACGCC
GTCCAGAAAGGCGTGCAGCCGTTTGTTCTCCACGACCGCCTCCAGCCGGTCGTAGAAAATCAGCGAGAACGCAAAGGCCGGAAGAAAGACACCCACCGTC
ATGGCCACCGCCCCGATCGGCCCCCCCGCCACATAGCCGACGAACGTGGCGAAGATGATGAGGGGTGCCGGTAGCACACCGGACAGCGCCAGGCCGTCCA
GGAACTGCCCATCCGTCATCCATCCGCGCCCGACGGCGTCGTTGCGAACGAACGGAATCGCTGTGTAGGCGCCGCCGAAGGTGAGCAAGCCGGCCTTCAG
GCCCGACGCGAAGATGAGCAGCACCGAGGCCTGGCCCTGAACGACCGCTTCCACAAGCTTCGCTGTCGGTGCAGCCCACAAAGCCACGGCCGCGGCCAGC
GCCACCGCCGCCAGTGTCACCAAGAGCGCTGAGGCCCGATGATTCAGCACGAGCAGGGCGTACACAAGGCCGCCCGCCGGCAGGGTGATCCAGAAGTCGA
CACGACCTATGGCTGCCAGCGCGCAAACGATGGCAATGACCCACAACCAGCGATCAAGCAGGATGTGCTCGCCGATACGGTGCACGGCGCGCACGATCAG
GGCGATCACAGCCGCCTGCACGCCAAGGAACGCCGCGCCCAGCGCGGTACCCACGAATTCAATCTGGAAGTACAACCAGGACAGCGCGAACATCAGCAAG
AATCCGGGAAGCATGAAACCGAGTCCCGCCAGCACGCCCCCCAGCCGCCCCTTTGCTCGGATGCCCAAATGAACGCATATTTCATGCGCTTCGGGTCCGG
GCAGCACCTGCATCACCGCAAGCAGCTTGTTGAAGCGTTTGCTGGAGATCCAGCGTTCCTCGTCCACGAGCTCGCGGCGCAACATGTCGATCTGAGCCAC
AGGCCCGCCCCATGCGAGCAAGCCGAACTTGAGGAAGCGCGCGAAGAGCTGTGGGTAGCTCATGGGTGGAGGGACGGCTTCAGTCGTGGCATCCGTCGCC
TTGCTCGGGCGATACGACTCTTCATTCGCAACGCTCATAGATCTTCTCCTTGTAGTTCAACAGTAACCAGTCAAATACGGAAGTTGGCCAACAAGCCGTC
GAATACGGCCGAAGCCTGCGGCCAGCAGCAGGTCGTCTTGGGTGATGTCCCAGAAAGACGGACGGGCCGGGCGTGGTTGCGCGGCGGTCTGAGGACTGGT
CGGGGCGTTCACGTTGTTTTGTCCTCGTAACTCTTCAATAGCCAATCAAAAATTTCGCACGCGCGGGCAAGCAGCGCGTCGTCATCGGGTTCCGATGCGC
GCAAGCCGGCGAGCAGCGATTCGATGCCCAGCGCTTCTGCTACCGGCAGCCCGCCCAAATCCAGGCAATGCACGAGCTTGCCCAGGCGTACCAGTGCAGG
GGCGGAATCAAGTCCGAAACTCGCCAGCAGCGTCTCGAAGGTGACCTTGGTGCCCACATGACTGAAGGCGGCGCCGTCGAAATCGAAGCCGAGCCAGCCA
TTGCGGCAGTCGGAGGGACTCGCCAGCCAGACGATGCGCGCGCTCGGGTCGATGAACCGCCGGATCAGCCAGGCCGAAGCGAGTCGGTCCACCCACGGGC
GCGCCCGCGTGGCCCAGGTCCGACCCTGATAGTCGGCGCGGTTCAGCCGCGGAATATCCGTCTGCCGGGCGGTCGGCTCGTCGGGAGACATACGGCGGGT
GATCGCGTCGCGCAGGTCGTCCAGCAGGCTCAAGGTCTGCCGCTGCGCCTCGCCGGGGAAGAAGTCGATGCGGTTCACCTGCTCGAAGCGGCGCACGAGC
GGCTGGAGCTTGCGCATGGCATCGGCGCCGTCCGGGGATGCCAGGTTACGCCCGAGCGCTTTGATCTCCTCGGCGATGCTGGCGTACTCCTCGCCCCGGT
CGAACAGGGCGCGTAGCGCGGCCTTCTGAGCTTCGTCACACCCCGACAGTCGATAGACCTGGCCGCTGCCCCCGACTTCCACCGCCTGCGCCGCCACTTC
GCCCAGCGTCGCCGCACTGTCCGCCGAGTCGGGCAGCAGATAGACCCCGTCGCGCAGCGTTGCGCAGCCCTGCGCTTTGACAGAACGCCAGACGCGCATG
CGGCCGGTCGATGCCTTGGTGGGCAGGCTGACGAATAGGGCAAGAAAGCTCAAGCACGGGCTCCTTCGTCAAAAAGATGATTAATGTTACAAATACTACA
ATAAGTTATATCTAATACACAACTCATGTCGGAGCGTCAATTTAAGGCATACCCTAACTGGATGTCAGGAATGGCCACGCTGCGCCGTCAGAATAGAGTC
TGCTTTCACATTCTTTGACACATGCTTGCCAAGGTCATAGATTCCAACCTGACAAATTCAAGGCTTAGGGCGCAATGGAACCAAAAACCAACGTAAGCCC
TACCGCCCATCCAGCCTATGGAGGCATCTTGCAGGGACAACGCATCGGTTACGTTCGGGTCAGCAGTTACGACCAGAACCCGGAACGCCAACTTGAGCAG
GTCGAGATCGGCAAGCTGTTCACCGACAAGGCCTCGGGCAAGGACACCCAGCGCCCGCAGCTGGAAGCCATGCTCGGATTCGTCCGCGAAGGCGATACCG
TGGTGGTGCACAGCATGGATCGCCTGGCGCGCAACCTCGACGATCTGCGCCGTCTGGTGCAAAGGCTGACCAAGCGCGGCGTGCGCATCGAGTTCTTGAA
GGAGGGGTTGGTGTTCACCGGCGAGGACTCGCCCATGGCCAACCTCATGTTGTCGGTCATGGGGGCCTTTGCCGAGTTCGAGCGCGCCCTGATCCGCGAG
CGGCAGCGCGAGGGCATCGCCCTGGCCAAGCAGCGCGGTGCTTACCGGGGCCGCAAGAAAGCTCTCTCCGACGATCAAGCCATCACGTTGCGGCAGCGGG
CCGCTGCCGGCGAGCCGAAGGCTCAGCTCGCACGCGAGTTCGGCATCAGCCGTGAAACCCTCTACCAGTACCTTCGCACGGACGACTGAACCATGCCGCG
TCGCTCGATTCTCTCGGCTACGGAGCGCGACACCCTGCTTGCGCTGCCAGAAAGCCAGGATGACCTGATCCGCTACTACACCTTCAACGACTCCGACCTA
TCCCTGATCCGTCAACGGCGGGGCGATGGCAACCGCCTCGGCTTCGCCGTGCAGCTCTGCCTGCTGCGCTACCCTGGTTATGCGCTGGGCAACGACACGG
CGCTACCCGAGCCCGTGATCCAGTGGGTGGCCAAGCAAGTCCAAGCCGACCCCGCGAGTTGGGCGAAGTACGGTGAGCGCGACGTGACCCGCCGCGAGCA
CGCTCTGGAACTGCGCACCTACCTGCAACTGGCCCCGTTCGGTCTGTCGGACTTCCGCGCCCTGGTGCGCGAGTTGACCGAGCTGGCCCAGCAGACCGAC
AAGGGCTTGCTGCTGGCCGGGCAGGCGCTGGAGAGCTTGCGCCAGAAGCGGCGCATCCTGCCGACGCTGAGCGTTATTGACCGGGCGTGTTCGGAGGCCA
TTGCACGCGCCAATCGGCGGGTCTATCGCGCCCTGATCGAGCCGTTGAACCCATCGCATCACGCCAAGCTCGACGAACTGCTCACCATTAAGGCCGGCAG
CAACAGCACTTGGTTGACCTGGTTGCGGCAATCACCGCTGAAGCCGAACTCGCGGCACATGATCGAGCACATCGAGCGGCTGAAGATTTTCCAACTGGTG
GGCCTTCCCGACAGCCTCGGCCGGCACATCCACCAGAACCGATTGCTGAAGCTCGCCCGCGAGGGCGGGCAGATGACGCCACAAGACCTCGGCAAGTTCG
AACCGGAGAGGCGCTATGCCACGCTGGTCGCCGTGGTACTGGAAAGCACCGCGACCGTGATCGATGAACTGGTTGATCTGCACGACCGCATCCTGGTCAA
GCTGTTCAGTGGCGCGAAACACAAGCATCAGCAGCAGTTCCAGAAGCAGGGCAAAGCGATCAATGACAAGGTGCGCCTGTACTCGAAGATCGGCCAGGCC
CTGCTGGACGCTAAAGAGTCCGGTGACGATCCGTTCGCCGCCATCGAGGCGGTCATTCCCTGGGACGAGTTCACCCAGAGTGTCACTGAGGCCGAGCTGC
TGGCCCGGCCGGAAGCCTTCGACCACCTGCACCTGGTCAGCGAGAACTTCGCTACGCTACGCCGCTACACCCCAGCCTTTCTGGAGGTGCTTCAGCTCCG
AGCCGCGACGGCAGCGCAAGCCGTGCTGGATGCCGTTCAGACCCTACGCGAGATGAATGCCGATAATCTGCGCAAGGTGCCCTCCGACGCACCGACCGCC
TTCATCAAGCCGCGCTGGAAACCGCTGGTGATCACCCCGGAAGGCATCGACCGGCGCTTCTACGAAATCTGCGCCTTGTCCGAGTTGAAGAACGCGCTGC
GCTCCGGCGACATCTGGGTCAAAGGCTCGCGGCAGTTCCGCGACTTCGATGACTACCTACTGCCTCCCGAGAAATTCGCCGCACTCAAGCGGGAACAGGC
GCTGCCACTCGCGATCAACCCGAACAGCGACCAGTACCTGGAAGAGCGTTTGCAGCTGCTGGACGAGCAGCTGGCCACTGTCACCCGACTGGCAAAGGAC
AACGAACTACCCGATGCCATCCTCACCGAGTCCGGGCTAAAAATCACCCCGCTGGATTCCGCGGTGCCCAACACCGCGCAGGCGCTGATCGACCAGACCA
GCCAGCTACTGCCGCGCATCAAGATCACCGAGCTGCTGATGGATGTGGATGAATGGACGGGCTTCACCCGCCACTTCACGCACCTGAAGGATGGCGCACA
GGCGAAAGACCGGACGCTACTGCTAACGGCGATCCTGGGCGATGCCATCAACCTCGGCCTGACCAAAATGGCCGAGTCGAGTCCGGGCATGACCTACGCC
AAGCTGTCCTGGTTGCAAGCCTGGCACATCCGTGACGAAACCTACTCGACGGCCCTGGCCGAGCTGGTCAACAGCCAGTTCCGGCATGCCTTCGCCGCCA
ACTGGGGTGACGGCACCACCTCATCCTCCGATGGCCAGCGTTTCCGTGCCGGCGGTAAAGGCGAGAGCACCGGCCACGTCAACCCGAAGTACGGTAGCGA
GCCAGGACGGCTGTTCTACACCCACATCTCTGACCAGTACGCGCCGTTCAGCACCCGCGTGGTGAATGTAGGCGTGCGTGATTCCACCTACGTGCTCGAC
GGTCTGCTGTACCACGAGTCCGATCTGCGGATCGAGGAGCACTACACCGACACCGCTGGCTTCACCGATCACGTCTTCGCCCTGATGCACCTGCTGGGCT
TCCGCTTCGCGCCGCGCATCCGCGACCTCGGTGAAACCAAGTTGTATGTGCCCAATAGCGTCCAAGACTACCCGACGCTGCGTCCAATGCTCGGCGGAAC
CCTGAACATCAAGCACGTCTGCGCTCACTGGGACGAGATTCTGCGGCTGGCCGCGTCGATCAAGCAGGGCACCGTCACCGCATCGCTGATGCTGCGCAAG
CTTGGCAGCTACCCGCGCCAGAACGGCCTGGCCGTGGCTCTGCGCGAGCTGGGTCGGATCGAGCGCACGCTGTTCATCCTCGATTGGCTGCAAAGCGTGG
AACTGCGTCGCCGCGTGCATGCCGGATTGAACAAGGGCGAGGCGCGTAACTCCCTGGCCAGGGCGGTGTTCTTCAACCGCCTCGGCGAGATCAGGGATCG
GAGTTTCGAGCAGCAGCGCTACCGGGCCAGCGGCCTCAACCTGGTGACGGCCGCCATCGTGTTGTGGAACACCGTGTACTTGGAGCGCGCGACCCAGGCC
CGAGAAGAGGCAGGCAAGCCAGTTAATCCTGAGTTACTGCAATACCTTTCGCCATTGGGCTGGGAGCACATCAACCTGACCGGCGATTACGTTTGGCGGC
AAAGCCGCAAGCTGGAAGACGGGAAATTCAGGCCGCTGCGGCAGCTCGGAAAACCTTAGCGTACGATTTTTTCCGAGTTCTGCGGGCTCCCC
GCGCCAAAGCACAACGTCATAGACGACCTTGAGTAGGCCGCAGGCCACCAGCGGCGCCGCCAGCCAGCCGGCGGCGAATAGGGCGCCGCCAATGGCGGGG
CTCGCTATGGCATTGAGGCGCTTTACCGCACCGCCGTAGTTGTTTTCCCAGTGGCTGACGATCAGCTTCTCGGACAGGCCGGTGAGTTTGGCCGGATCGC
ATGAAAGAGGTTTCAGTTCGTAAGGCATCTTGGCTTCCTCAGCAAGGTGGATCGGAAACGGCGCGACGAAGGCTGACTCGATCAGGTTCAGCCTTGGTTC
GGAAATACCAGCCACCCCGCCAATCCCGCCGCGAGGATCACGACGACGACGTTGAGCTTGTTCTTCCAGGCATAAAGGAATGCCAAGCCTGCGGCGAAAA
TCGACATGCCCACCGTCAACGATGGGACACGTTCAGCAGTGACCTGCGCCAAGTCGATGGTGGTTGCGCCGATCAGGCCGACTACCCCAGCCGCGACGCC
GTCCAGAAAGGCGTGCAGCCGTTTGTTCTCCACGACCGCCTCCAGCCGGTCGTAGAAAATCAGCGAGAACGCAAAGGCCGGAAGAAAGACACCCACCGTC
ATGGCCACCGCCCCGATCGGCCCCCCCGCCACATAGCCGACGAACGTGGCGAAGATGATGAGGGGTGCCGGTAGCACACCGGACAGCGCCAGGCCGTCCA
GGAACTGCCCATCCGTCATCCATCCGCGCCCGACGGCGTCGTTGCGAACGAACGGAATCGCTGTGTAGGCGCCGCCGAAGGTGAGCAAGCCGGCCTTCAG
GCCCGACGCGAAGATGAGCAGCACCGAGGCCTGGCCCTGAACGACCGCTTCCACAAGCTTCGCTGTCGGTGCAGCCCACAAAGCCACGGCCGCGGCCAGC
GCCACCGCCGCCAGTGTCACCAAGAGCGCTGAGGCCCGATGATTCAGCACGAGCAGGGCGTACACAAGGCCGCCCGCCGGCAGGGTGATCCAGAAGTCGA
CACGACCTATGGCTGCCAGCGCGCAAACGATGGCAATGACCCACAACCAGCGATCAAGCAGGATGTGCTCGCCGATACGGTGCACGGCGCGCACGATCAG
GGCGATCACAGCCGCCTGCACGCCAAGGAACGCCGCGCCCAGCGCGGTACCCACGAATTCAATCTGGAAGTACAACCAGGACAGCGCGAACATCAGCAAG
AATCCGGGAAGCATGAAACCGAGTCCCGCCAGCACGCCCCCCAGCCGCCCCTTTGCTCGGATGCCCAAATGAACGCATATTTCATGCGCTTCGGGTCCGG
GCAGCACCTGCATCACCGCAAGCAGCTTGTTGAAGCGTTTGCTGGAGATCCAGCGTTCCTCGTCCACGAGCTCGCGGCGCAACATGTCGATCTGAGCCAC
AGGCCCGCCCCATGCGAGCAAGCCGAACTTGAGGAAGCGCGCGAAGAGCTGTGGGTAGCTCATGGGTGGAGGGACGGCTTCAGTCGTGGCATCCGTCGCC
TTGCTCGGGCGATACGACTCTTCATTCGCAACGCTCATAGATCTTCTCCTTGTAGTTCAACAGTAACCAGTCAAATACGGAAGTTGGCCAACAAGCCGTC
GAATACGGCCGAAGCCTGCGGCCAGCAGCAGGTCGTCTTGGGTGATGTCCCAGAAAGACGGACGGGCCGGGCGTGGTTGCGCGGCGGTCTGAGGACTGGT
CGGGGCGTTCACGTTGTTTTGTCCTCGTAACTCTTCAATAGCCAATCAAAAATTTCGCACGCGCGGGCAAGCAGCGCGTCGTCATCGGGTTCCGATGCGC
GCAAGCCGGCGAGCAGCGATTCGATGCCCAGCGCTTCTGCTACCGGCAGCCCGCCCAAATCCAGGCAATGCACGAGCTTGCCCAGGCGTACCAGTGCAGG
GGCGGAATCAAGTCCGAAACTCGCCAGCAGCGTCTCGAAGGTGACCTTGGTGCCCACATGACTGAAGGCGGCGCCGTCGAAATCGAAGCCGAGCCAGCCA
TTGCGGCAGTCGGAGGGACTCGCCAGCCAGACGATGCGCGCGCTCGGGTCGATGAACCGCCGGATCAGCCAGGCCGAAGCGAGTCGGTCCACCCACGGGC
GCGCCCGCGTGGCCCAGGTCCGACCCTGATAGTCGGCGCGGTTCAGCCGCGGAATATCCGTCTGCCGGGCGGTCGGCTCGTCGGGAGACATACGGCGGGT
GATCGCGTCGCGCAGGTCGTCCAGCAGGCTCAAGGTCTGCCGCTGCGCCTCGCCGGGGAAGAAGTCGATGCGGTTCACCTGCTCGAAGCGGCGCACGAGC
GGCTGGAGCTTGCGCATGGCATCGGCGCCGTCCGGGGATGCCAGGTTACGCCCGAGCGCTTTGATCTCCTCGGCGATGCTGGCGTACTCCTCGCCCCGGT
CGAACAGGGCGCGTAGCGCGGCCTTCTGAGCTTCGTCACACCCCGACAGTCGATAGACCTGGCCGCTGCCCCCGACTTCCACCGCCTGCGCCGCCACTTC
GCCCAGCGTCGCCGCACTGTCCGCCGAGTCGGGCAGCAGATAGACCCCGTCGCGCAGCGTTGCGCAGCCCTGCGCTTTGACAGAACGCCAGACGCGCATG
CGGCCGGTCGATGCCTTGGTGGGCAGGCTGACGAATAGGGCAAGAAAGCTCAAGCACGGGCTCCTTCGTCAAAAAGATGATTAATGTTACAAATACTACA
ATAAGTTATATCTAATACACAACTCATGTCGGAGCGTCAATTTAAGGCATACCCTAACTGGATGTCAGGAATGGCCACGCTGCGCCGTCAGAATAGAGTC
TGCTTTCACATTCTTTGACACATGCTTGCCAAGGTCATAGATTCCAACCTGACAAATTCAAGGCTTAGGGCGCAATGGAACCAAAAACCAACGTAAGCCC
TACCGCCCATCCAGCCTATGGAGGCATCTTGCAGGGACAACGCATCGGTTACGTTCGGGTCAGCAGTTACGACCAGAACCCGGAACGCCAACTTGAGCAG
GTCGAGATCGGCAAGCTGTTCACCGACAAGGCCTCGGGCAAGGACACCCAGCGCCCGCAGCTGGAAGCCATGCTCGGATTCGTCCGCGAAGGCGATACCG
TGGTGGTGCACAGCATGGATCGCCTGGCGCGCAACCTCGACGATCTGCGCCGTCTGGTGCAAAGGCTGACCAAGCGCGGCGTGCGCATCGAGTTCTTGAA
GGAGGGGTTGGTGTTCACCGGCGAGGACTCGCCCATGGCCAACCTCATGTTGTCGGTCATGGGGGCCTTTGCCGAGTTCGAGCGCGCCCTGATCCGCGAG
CGGCAGCGCGAGGGCATCGCCCTGGCCAAGCAGCGCGGTGCTTACCGGGGCCGCAAGAAAGCTCTCTCCGACGATCAAGCCATCACGTTGCGGCAGCGGG
CCGCTGCCGGCGAGCCGAAGGCTCAGCTCGCACGCGAGTTCGGCATCAGCCGTGAAACCCTCTACCAGTACCTTCGCACGGACGACTGAACCATGCCGCG
TCGCTCGATTCTCTCGGCTACGGAGCGCGACACCCTGCTTGCGCTGCCAGAAAGCCAGGATGACCTGATCCGCTACTACACCTTCAACGACTCCGACCTA
TCCCTGATCCGTCAACGGCGGGGCGATGGCAACCGCCTCGGCTTCGCCGTGCAGCTCTGCCTGCTGCGCTACCCTGGTTATGCGCTGGGCAACGACACGG
CGCTACCCGAGCCCGTGATCCAGTGGGTGGCCAAGCAAGTCCAAGCCGACCCCGCGAGTTGGGCGAAGTACGGTGAGCGCGACGTGACCCGCCGCGAGCA
CGCTCTGGAACTGCGCACCTACCTGCAACTGGCCCCGTTCGGTCTGTCGGACTTCCGCGCCCTGGTGCGCGAGTTGACCGAGCTGGCCCAGCAGACCGAC
AAGGGCTTGCTGCTGGCCGGGCAGGCGCTGGAGAGCTTGCGCCAGAAGCGGCGCATCCTGCCGACGCTGAGCGTTATTGACCGGGCGTGTTCGGAGGCCA
TTGCACGCGCCAATCGGCGGGTCTATCGCGCCCTGATCGAGCCGTTGAACCCATCGCATCACGCCAAGCTCGACGAACTGCTCACCATTAAGGCCGGCAG
CAACAGCACTTGGTTGACCTGGTTGCGGCAATCACCGCTGAAGCCGAACTCGCGGCACATGATCGAGCACATCGAGCGGCTGAAGATTTTCCAACTGGTG
GGCCTTCCCGACAGCCTCGGCCGGCACATCCACCAGAACCGATTGCTGAAGCTCGCCCGCGAGGGCGGGCAGATGACGCCACAAGACCTCGGCAAGTTCG
AACCGGAGAGGCGCTATGCCACGCTGGTCGCCGTGGTACTGGAAAGCACCGCGACCGTGATCGATGAACTGGTTGATCTGCACGACCGCATCCTGGTCAA
GCTGTTCAGTGGCGCGAAACACAAGCATCAGCAGCAGTTCCAGAAGCAGGGCAAAGCGATCAATGACAAGGTGCGCCTGTACTCGAAGATCGGCCAGGCC
CTGCTGGACGCTAAAGAGTCCGGTGACGATCCGTTCGCCGCCATCGAGGCGGTCATTCCCTGGGACGAGTTCACCCAGAGTGTCACTGAGGCCGAGCTGC
TGGCCCGGCCGGAAGCCTTCGACCACCTGCACCTGGTCAGCGAGAACTTCGCTACGCTACGCCGCTACACCCCAGCCTTTCTGGAGGTGCTTCAGCTCCG
AGCCGCGACGGCAGCGCAAGCCGTGCTGGATGCCGTTCAGACCCTACGCGAGATGAATGCCGATAATCTGCGCAAGGTGCCCTCCGACGCACCGACCGCC
TTCATCAAGCCGCGCTGGAAACCGCTGGTGATCACCCCGGAAGGCATCGACCGGCGCTTCTACGAAATCTGCGCCTTGTCCGAGTTGAAGAACGCGCTGC
GCTCCGGCGACATCTGGGTCAAAGGCTCGCGGCAGTTCCGCGACTTCGATGACTACCTACTGCCTCCCGAGAAATTCGCCGCACTCAAGCGGGAACAGGC
GCTGCCACTCGCGATCAACCCGAACAGCGACCAGTACCTGGAAGAGCGTTTGCAGCTGCTGGACGAGCAGCTGGCCACTGTCACCCGACTGGCAAAGGAC
AACGAACTACCCGATGCCATCCTCACCGAGTCCGGGCTAAAAATCACCCCGCTGGATTCCGCGGTGCCCAACACCGCGCAGGCGCTGATCGACCAGACCA
GCCAGCTACTGCCGCGCATCAAGATCACCGAGCTGCTGATGGATGTGGATGAATGGACGGGCTTCACCCGCCACTTCACGCACCTGAAGGATGGCGCACA
GGCGAAAGACCGGACGCTACTGCTAACGGCGATCCTGGGCGATGCCATCAACCTCGGCCTGACCAAAATGGCCGAGTCGAGTCCGGGCATGACCTACGCC
AAGCTGTCCTGGTTGCAAGCCTGGCACATCCGTGACGAAACCTACTCGACGGCCCTGGCCGAGCTGGTCAACAGCCAGTTCCGGCATGCCTTCGCCGCCA
ACTGGGGTGACGGCACCACCTCATCCTCCGATGGCCAGCGTTTCCGTGCCGGCGGTAAAGGCGAGAGCACCGGCCACGTCAACCCGAAGTACGGTAGCGA
GCCAGGACGGCTGTTCTACACCCACATCTCTGACCAGTACGCGCCGTTCAGCACCCGCGTGGTGAATGTAGGCGTGCGTGATTCCACCTACGTGCTCGAC
GGTCTGCTGTACCACGAGTCCGATCTGCGGATCGAGGAGCACTACACCGACACCGCTGGCTTCACCGATCACGTCTTCGCCCTGATGCACCTGCTGGGCT
TCCGCTTCGCGCCGCGCATCCGCGACCTCGGTGAAACCAAGTTGTATGTGCCCAATAGCGTCCAAGACTACCCGACGCTGCGTCCAATGCTCGGCGGAAC
CCTGAACATCAAGCACGTCTGCGCTCACTGGGACGAGATTCTGCGGCTGGCCGCGTCGATCAAGCAGGGCACCGTCACCGCATCGCTGATGCTGCGCAAG
CTTGGCAGCTACCCGCGCCAGAACGGCCTGGCCGTGGCTCTGCGCGAGCTGGGTCGGATCGAGCGCACGCTGTTCATCCTCGATTGGCTGCAAAGCGTGG
AACTGCGTCGCCGCGTGCATGCCGGATTGAACAAGGGCGAGGCGCGTAACTCCCTGGCCAGGGCGGTGTTCTTCAACCGCCTCGGCGAGATCAGGGATCG
GAGTTTCGAGCAGCAGCGCTACCGGGCCAGCGGCCTCAACCTGGTGACGGCCGCCATCGTGTTGTGGAACACCGTGTACTTGGAGCGCGCGACCCAGGCC
CGAGAAGAGGCAGGCAAGCCAGTTAATCCTGAGTTACTGCAATACCTTTCGCCATTGGGCTGGGAGCACATCAACCTGACCGGCGATTACGTTTGGCGGC
AAAGCCGCAAGCTGGAAGACGGGAAATTCAGGCCGCTGCGGCAGCTCGGAAAACCTTAGCGTACGATTTTTTCCGAGTTCTGCGGGCTCCCC
Protein section
ORF number : 5
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
261 bp | 86 aa | 328 | 68 | - | No |
Annotation : manganese and iron superoxide dismutaseDescription :
ORF sequence :
MPYELKPLSCDPAKLTGLSEKLIVSHWENNYGGAVKRLNAIASPAIGGALFAAGWLAAPLVACGLLKVVYDVVLWRAFRKYEGPSS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 1638 | 388 | - | No |
Annotation : chromate resistance proteinDescription :
ORF sequence :
MSVANEESYRPSKATDATTEAVPPPMSYPQLFARFLKFGLLAWGGPVAQIDMLRRELVDEERWISSKRFNKLLAVMQVLPGPEAHEICVHLGIRAKGRLG
GVLAGLGFMLPGFLLMFALSWLYFQIEFVGTALGAAFLGVQAAVIALIVRAVHRIGEHILLDRWLWVIAIVCALAAIGRVDFWITLPAGGLVYALLVLNH
RASALLVTLAAVALAAAVALWAAPTAKLVEAVVQGQASVLLIFASGLKAGLLTFGGAYTAIPFVRNDAVGRGWMTDGQFLDGLALSGVLPAPLIIFATFV
GYVAGGPIGAVAMTVGVFLPAFAFSLIFYDRLEAVVENKRLHAFLDGVAAGVVGLIGATTIDLAQVTAERVPSLTVGMSIFAAGLAFLYAWKNKLNVVVV
ILAAGLAGWLVFPNQG
GVLAGLGFMLPGFLLMFALSWLYFQIEFVGTALGAAFLGVQAAVIALIVRAVHRIGEHILLDRWLWVIAIVCALAAIGRVDFWITLPAGGLVYALLVLNH
RASALLVTLAAVALAAAVALWAAPTAKLVEAVVQGQASVLLIFASGLKAGLLTFGGAYTAIPFVRNDAVGRGWMTDGQFLDGLALSGVLPAPLIIFATFV
GYVAGGPIGAVAMTVGVFLPAFAFSLIFYDRLEAVVENKRLHAFLDGVAAGVVGLIGATTIDLAQVTAERVPSLTVGMSIFAAGLAFLYAWKNKLNVVVV
ILAAGLAGWLVFPNQG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 2753 | 1809 | - | No |
Annotation : chromate resistance proteinDescription :
ORF sequence :
MSFLALFVSLPTKASTGRMRVWRSVKAQGCATLRDGVYLLPDSADSAATLGEVAAQAVEVGGSGQVYRLSGCDEAQKAALRALFDRGEEYASIAEEIKAL
GRNLASPDGADAMRKLQPLVRRFEQVNRIDFFPGEAQRQTLSLLDDLRDAITRRMSPDEPTARQTDIPRLNRADYQGRTWATRARPWVDRLASAWLIRRF
IDPSARIVWLASPSDCRNGWLGFDFDGAAFSHVGTKVTFETLLASFGLDSAPALVRLGKLVHCLDLGGLPVAEALGIESLLAGLRASEPDDDALLARACE
IFDWLLKSYEDKTT
GRNLASPDGADAMRKLQPLVRRFEQVNRIDFFPGEAQRQTLSLLDDLRDAITRRMSPDEPTARQTDIPRLNRADYQGRTWATRARPWVDRLASAWLIRRF
IDPSARIVWLASPSDCRNGWLGFDFDGAAFSHVGTKVTFETLLASFGLDSAPALVRLGKLVHCLDLGGLPVAEALGIESLLAGLRASEPDDDALLARACE
IFDWLLKSYEDKTT
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
561 bp | 186 aa | 3029 | 3589 | + | No |
AG : Tn3 resolvase
ORF sequence :
MQGQRIGYVRVSSYDQNPERQLEQVEIGKLFTDKASGKDTQRPQLEAMLGFVREGDTVVVHSMDRLARNLDDLRRLVQRLTKRGVRIEFLKEGLVFTGED
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSDDQAITLRQRAAAGEPKAQLAREFGISRETLYQYLRTDD
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSDDQAITLRQRAAAGEPKAQLAREFGISRETLYQYLRTDD
Blast result :ORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
2967 bp | 988 aa | 3593 | 6559 | + | No |
Chemistry : DDE
ORF sequence :
MPRRSILSATERDTLLALPESQDDLIRYYTFNDSDLSLIRQRRGDGNRLGFAVQLCLLRYPGYALGNDTALPEPVIQWVAKQVQADPASWAKYGERDVTR
REHALELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPTLSVIDRACSEAIARANRRVYRALIEPLNPSHHAKLDELLTIK
AGSNSTWLTWLRQSPLKPNSRHMIEHIERLKIFQLVGLPDSLGRHIHQNRLLKLAREGGQMTPQDLGKFEPERRYATLVAVVLESTATVIDELVDLHDRI
LVKLFSGAKHKHQQQFQKQGKAINDKVRLYSKIGQALLDAKESGDDPFAAIEAVIPWDEFTQSVTEAELLARPEAFDHLHLVSENFATLRRYTPAFLEVL
QLRAATAAQAVLDAVQTLREMNADNLRKVPSDAPTAFIKPRWKPLVITPEGIDRRFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPPEKFAALKR
EQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDSAVPNTAQALIDQTSQLLPRIKITELLMDVDEWTGFTRHFTHLKD
GAQAKDRTLLLTAILGDAINLGLTKMAESSPGMTYAKLSWLQAWHIRDETYSTALAELVNSQFRHAFAANWGDGTTSSSDGQRFRAGGKGESTGHVNPKY
GSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPNSVQDYPTLRPML
GGTLNIKHVCAHWDEILRLAASIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQAREEAGKPVNPELLQYLSPLGWEHINLTGDYVWRQSRKLEDGKFRPLRQLGKP
REHALELRTYLQLAPFGLSDFRALVRELTELAQQTDKGLLLAGQALESLRQKRRILPTLSVIDRACSEAIARANRRVYRALIEPLNPSHHAKLDELLTIK
AGSNSTWLTWLRQSPLKPNSRHMIEHIERLKIFQLVGLPDSLGRHIHQNRLLKLAREGGQMTPQDLGKFEPERRYATLVAVVLESTATVIDELVDLHDRI
LVKLFSGAKHKHQQQFQKQGKAINDKVRLYSKIGQALLDAKESGDDPFAAIEAVIPWDEFTQSVTEAELLARPEAFDHLHLVSENFATLRRYTPAFLEVL
QLRAATAAQAVLDAVQTLREMNADNLRKVPSDAPTAFIKPRWKPLVITPEGIDRRFYEICALSELKNALRSGDIWVKGSRQFRDFDDYLLPPEKFAALKR
EQALPLAINPNSDQYLEERLQLLDEQLATVTRLAKDNELPDAILTESGLKITPLDSAVPNTAQALIDQTSQLLPRIKITELLMDVDEWTGFTRHFTHLKD
GAQAKDRTLLLTAILGDAINLGLTKMAESSPGMTYAKLSWLQAWHIRDETYSTALAELVNSQFRHAFAANWGDGTTSSSDGQRFRAGGKGESTGHVNPKY
GSEPGRLFYTHISDQYAPFSTRVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGETKLYVPNSVQDYPTLRPML
GGTLNIKHVCAHWDEILRLAASIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNSLARAVFFNRLGEI
RDRSFEQQRYRASGLNLVTAAIVLWNTVYLERATQAREEAGKPVNPELLQYLSPLGWEHINLTGDYVWRQSRKLEDGKFRPLRQLGKP
Blast result :
Comments
The transposase (ORF5) is 84% aa similar to ISPa38.
The others ORF : ORF1 : manganese and iron superoxide dismutase,
ORF2: chromate resistance protein,
ORF3: chromate resistance protein,
ORF4: resolvase domain-containing protein.
The partial transposase of ISPa58 is 97% aa similar to the transposase of ISPa40 (aa 200-988). ISPa58 is found in Pseudomonas aeruginosa (KC821786, JX194160).
File updated the February 13 2015.
The others ORF : ORF1 : manganese and iron superoxide dismutase,
ORF2: chromate resistance protein,
ORF3: chromate resistance protein,
ORF4: resolvase domain-containing protein.
The partial transposase of ISPa58 is 97% aa similar to the transposase of ISPa40 (aa 200-988). ISPa58 is found in Pseudomonas aeruginosa (KC821786, JX194160).
File updated the February 13 2015.
References
1] ISfinder annotation (2011)
2] Martin Holm Rau (2011) Direct submission to ISfinder.
2] Martin Holm Rau (2011) Direct submission to ISfinder.